Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG08G012940 Citrullus lanatus HOM05D005141 ORTHO05D006250 6.9e-254 880.2 451 100.0
MELO3C011217.2 Cucumis melo HOM05D005141 ORTHO05D006250 7.2e-203 710.7 479 80.6
Sed0000645 Sechium edule HOM05D005141 ORTHO05D006250 8.9e-193 677.2 455 80.0
CsaV3_2G031660 Cucumis sativus L. HOM05D005141 ORTHO05D006250 2.8e-122 443.0 274 85.0
Prupe.1G467500 Prunus persica HOM05D005141 ORTHO05D006250 2.7e-117 426.4 418 60.3
RcHm_v2.0_Chr6g0312851 Rosa chinensis HOM05D005141 ORTHO05D006250 1.2e-112 411.0 420 59.0
MD15G1116100 Malus domestica HOM05D005141 ORTHO05D006250 2.0e-112 410.2 423 59.3
FAN20G1096 Fragaria x ananassa HOM05D005141 ORTHO05D006250 7.2e-110 401.7 453 54.3
FAN15G0409 Fragaria x ananassa HOM05D005141 ORTHO05D006250 6.1e-109 398.7 443 54.4
FAN27G2430 Fragaria x ananassa HOM05D005141 ORTHO05D006250 6.1e-109 398.7 443 54.6
FAN24G3348 Fragaria x ananassa HOM05D005141 ORTHO05D006250 5.2e-108 395.6 443 54.6
MD08G1137500 Malus domestica HOM05D005141 ORTHO05D006250 8.8e-108 394.8 456 55.3
Haze_21614 Corylus avellana HOM05D005141 ORTHO05D006250 1.3e-106 391.0 423 56.3
Cfa021484 Carpinus fangiana HOM05D005141 ORTHO05D006250 2.9e-103 379.8 433 55.4
QL12p031441 Quercus lobata HOM05D005141 ORTHO05D006250 2.9e-103 379.8 419 57.0
Potri.018G033700 Populus trichocarpa HOM05D005141 ORTHO05D006250 7.2e-102 375.2 394 57.9
Manes.16G067800 Manihot esculenta HOM05D005141 ORTHO05D006250 1.6e-101 374.0 458 53.1
CiPaw.07G218200 Carya illinoinensis HOM05D005141 ORTHO05D006250 4.7e-101 372.5 452 52.9
GSVIVG01035797001 Vitis vinifera HOM05D005141 ORTHO05D006250 6.1e-101 372.1 429 56.6
CANSAT25G3062 Cannabis sativa HOM05D005141 ORTHO05D006250 2.3e-100 370.2 459 53.4
Dinv30204 Davidia involucrata HOM05D005141 ORTHO05D006250 5.2e-100 369.0 425 56.9
Sabra18G0034600 Salix brachista HOM05D005141 ORTHO05D006250 7.5e-99 365.2 415 54.7
CiPaw.08G014900 Carya illinoinensis HOM05D005141 ORTHO05D006250 9.7e-99 364.8 453 53.0
Sabra06G0193700 Salix brachista HOM05D005141 ORTHO05D006250 3.1e-97 359.8 423 54.6
Ciclev10008356m.g Citrus clementina HOM05D005141 ORTHO05D006250 7.0e-97 358.6 428 54.2
Phvul.009G097300 Phaseolus vulgaris HOM05D005141 ORTHO05D006250 6.5e-95 352.1 416 54.1
Medtr3g107950 Medicago truncatula HOM05D005141 ORTHO05D006250 1.5e-94 350.9 414 53.9
TWI32G0021 Tripterygium wilfordii HOM05D005141 ORTHO05D006250 1.5e-94 350.9 418 52.9
Manes.03G065500 Manihot esculenta HOM05D005141 ORTHO05D006250 3.2e-94 349.7 421 55.3
Thecc.09G145300 Theobroma cacao HOM05D005141 ORTHO05D006250 4.2e-94 349.4 433 54.5
Lj1g0018494 Lotus japonicus HOM05D005141 ORTHO05D006250 2.7e-93 346.7 417 54.7
Ca_15703_v3 Cicer arietinum L. HOM05D005141 ORTHO05D006250 6.1e-93 345.5 422 53.1
VMungo1309G3073 Vigna mungo HOM05D005141 ORTHO05D006250 8.0e-93 345.1 416 53.8
Atru.chr7.2334 Acer truncatum HOM05D005141 ORTHO05D006250 2.3e-92 343.6 428 54.0
Glyma.06G072700 Glycine max HOM05D005141 ORTHO05D006250 2.3e-92 343.6 416 54.3
Eucgr.C01809 Eucalyptus grandis HOM05D005141 ORTHO05D006250 5.2e-92 342.4 396 54.3
TPR.G34685 Trifolium pratense HOM05D005141 ORTHO05D006250 1.3e-90 337.8 417 53.5
Glyma.04G071400 Glycine max HOM05D005141 ORTHO05D006250 1.7e-90 337.4 417 53.2
TWI34G0135 Tripterygium wilfordii HOM05D005141 ORTHO05D006250 2.8e-90 336.7 364 55.5
Duzib187G0541 Durio zibethinus HOM05D005141 ORTHO05D006250 1.8e-89 334.0 430 52.6
TAR383G0458 Trochodendron aralioides HOM05D005141 ORTHO05D006250 5.0e-87 325.9 425 52.5
Nn2g11855 Nelumbo nucifera HOM05D005141 ORTHO05D006250 6.6e-87 325.5 434 49.3
Hma1.2p1_0175F.1_g077130 Hydrangea macrophylla HOM05D005141 ORTHO05D006250 1.9e-86 323.9 456 50.2
Duzib150G1154 Durio zibethinus HOM05D005141 ORTHO05D006250 4.2e-86 322.8 484 47.9
Gorai.009G011200 Gossypium raimondii HOM05D005141 ORTHO05D006250 5.5e-86 322.4 431 51.0
Lalb_Chr23g0268881 Lupinus albus HOM05D005141 ORTHO05D006250 9.5e-86 321.6 422 50.9
Potri.006G247500 Populus trichocarpa HOM05D005141 ORTHO05D006250 2.8e-85 320.1 309 61.8
Duzib168G0094 Durio zibethinus HOM05D005141 ORTHO05D006250 2.3e-84 317.0 457 48.8
TAR626G1320 Trochodendron aralioides HOM05D005141 ORTHO05D006250 4.0e-84 316.2 442 50.5
FvH4_2g30050 Fragaria vesca HOM05D005141 ORTHO05D006250 5.2e-84 315.8 333 56.8
arahy.Tifrunner.gnm1.ann1.WUI646 Arachis hypogaea HOM05D005141 ORTHO05D006250 9.8e-83 311.6 394 52.8
Gohir.A05G010100 Gossypium hirsutum HOM05D005141 ORTHO05D006250 1.9e-78 297.4 430 48.6
arahy.Tifrunner.gnm1.ann1.29TRSQ Arachis hypogaea HOM05D005141 ORTHO05D006250 7.3e-78 295.4 430 48.6
Actinidia13429 Actinidia chinensis HOM05D005141 ORTHO05D006250 1.2e-77 294.7 423 49.4
Lj7A714G44 Lonicera japonica HOM05D005141 ORTHO05D006250 3.6e-77 293.1 364 53.3
Gohir.D05G010800 Gossypium hirsutum HOM05D005141 ORTHO05D006250 4.4e-75 286.2 425 47.8
Cpa.g.sc91.20 Carica papaya HOM05D005141 ORTHO05D006250 8.3e-74 282.0 322 54.0
Lalb_Chr08g0243831 Lupinus albus HOM05D005141 ORTHO05D006250 8.3e-74 282.0 444 46.4
TAR636G0300 Trochodendron aralioides HOM05D005141 ORTHO05D006250 2.4e-73 280.4 427 46.8
vmacro11124 Vaccinium macrocarpon HOM05D005141 ORTHO05D006250 2.4e-73 280.4 491 43.2
CAN.G199.28 Capsicum annuum HOM05D005141 ORTHO05D006250 4.1e-73 279.6 420 47.9
Nitab4.5_0005873g0030 Nicotiana tabacum HOM05D005141 ORTHO05D006250 2.7e-72 276.9 449 44.3
PGSC0003DMG400026089 Solanum tuberosum HOM05D005141 ORTHO05D006250 6.0e-72 275.8 441 46.5
Rhsim02G0188600 Rhododendron simsii HOM05D005141 ORTHO05D006250 3.0e-71 273.5 324 54.9
Solyc06g065650.3 Solanum lycopersicum HOM05D005141 ORTHO05D006250 3.3e-70 270.0 442 46.2
Nitab4.5_0011669g0010 Nicotiana tabacum HOM05D005141 ORTHO05D006250 4.3e-70 269.6 450 44.7
PSO782G1260 Papaver somniferum HOM05D005141 ORTHO05D006250 1.6e-69 267.7 410 45.4
COL.COLO4_24046 Corchorus olitorius HOM05D005141 ORTHO05D006250 4.7e-69 266.2 294 56.1
Sopen06g024010 Solanum pennellii HOM05D005141 ORTHO05D006250 6.2e-69 265.8 442 45.5
CsaV3_3G046630 Cucumis sativus L. HOM05D005141 ORTHO05D006250 6.8e-68 262.3 379 47.5
DCAR_022871 Daucus carota HOM05D005141 ORTHO05D006250 6.8e-68 262.3 427 44.7
Sed0008448 Sechium edule HOM05D005141 ORTHO05D006250 2.0e-67 260.8 373 46.1
PGR031G2456 Punica granatum HOM05D005141 ORTHO05D006250 2.6e-67 260.4 439 44.0
SalBow4G0713 Salvia bowleyana HOM05D005141 ORTHO05D006250 3.4e-67 260.0 353 49.3
MELO3C003675.2 Cucumis melo HOM05D005141 ORTHO05D006250 2.9e-66 256.9 452 43.4
ClCG05G017130 Citrullus lanatus HOM05D005141 ORTHO05D006250 4.9e-66 256.1 450 44.0
Cc08_g08010 Coffea canephora HOM05D005141 ORTHO05D006250 4.9e-66 256.1 414 45.7
Nn8g39307 Nelumbo nucifera HOM05D005141 ORTHO05D006250 1.6e-64 251.1 311 49.5
ECA233G0036 Erigeron canadensis HOM05D005141 ORTHO05D006250 4.6e-64 249.6 389 46.8
MBI04_g39529_MAGBIO Magnolia biondii HOM05D005141 ORTHO05D006250 3.0e-63 246.9 379 46.4
Peaxi162Scf00545g00034 Petunia axillaris HOM05D005141 ORTHO05D006250 8.6e-63 245.4 470 41.5
Actinidia13280 Actinidia chinensis HOM05D005141 ORTHO05D006250 5.6e-62 242.7 297 52.2
MSTRG.25868 Avicennia marina HOM05D005141 ORTHO05D006250 7.3e-62 242.3 376 46.5
Psat0s1782g0240 Pisum sativum HOM05D005141 ORTHO05D006250 9.5e-62 241.9 261 57.1
HanXRQChr02g0050641 Helianthus annuus HOM05D005141 ORTHO05D006250 1.2e-61 241.5 336 49.4
Dinv11587 Davidia involucrata HOM05D005141 ORTHO05D006250 1.4e-60 238.0 273 55.7
Migut.A00282 Erythranthe guttata HOM05D005141 ORTHO05D006250 8.9e-60 235.3 384 45.1
PSO063G0687 Papaver somniferum HOM05D005141 ORTHO05D006250 2.2e-58 230.7 410 42.0
Lsat_1_v5_gn_1_43100 Lactuca sativa HOM05D005141 ORTHO05D006250 7.1e-57 225.7 385 43.6
EL10Ac2g02550 Beta vulgaris HOM05D005141 ORTHO05D006250 3.9e-55 219.9 366 43.4
Phvul.001G055100 Phaseolus vulgaris HOM05D005141 ORTHO05D006250 5.1e-55 219.5 371 43.4
Oeu032487.3 Olea europaea HOM05D005141 ORTHO05D006250 1.5e-54 218.0 304 48.7
Lsat_1_v5_gn_6_22941 Lactuca sativa HOM05D005141 ORTHO05D006250 1.2e-53 214.9 356 45.8
HanXRQChr13g0402161 Helianthus annuus HOM05D005141 ORTHO05D006250 1.4e-52 211.5 320 45.9
Oeu014659.3 Olea europaea HOM05D005141 ORTHO05D006250 4.0e-52 209.9 383 42.0
MBI01_g37337_MAGBIO Magnolia biondii HOM05D005141 ORTHO05D006250 2.6e-51 207.2 318 45.6
AUR62024850 Chenopodium quinoa HOM05D005141 ORTHO05D006250 4.4e-51 206.5 399 40.4
SGA_v2.0_scaffold27G11478 Striga asiatica HOM05D005141 ORTHO05D006250 2.9e-42 177.2 398 37.9
ATR0083G007 Amborella trichopoda HOM05D005141 ORTHO05D006250 3.8e-42 176.8 370 36.8
THA.LOC104803820 Tarenaya hassleriana HOM05D005141 ORTHO05D006250 6.0e-40 169.5 423 36.2
AT4G32570 Arabidopsis thaliana HOM05D005141 ORTHO05D006250 1.9e-38 164.5 420 35.2
AL7G19190 Arabidopsis lyrata HOM05D005141 ORTHO05D006250 5.6e-38 162.9 339 36.0
Carub.0007s0798 Capsella rubella HOM05D005141 ORTHO05D006250 3.6e-37 160.2 336 35.1
C03p87260 Brassica napus HOM05D005141 ORTHO05D006250 1.3e-34 151.8 332 37.0
BolC3t21027H Brassica oleracea HOM05D005141 ORTHO05D006250 1.3e-34 151.8 332 37.0
BraA08t33764Z Brassica rapa HOM05D005141 ORTHO05D006250 2.2e-34 151.0 337 35.9
Sp7g30350 Schrenkiella parvula HOM05D005141 ORTHO05D006250 4.9e-34 149.8 426 33.3
BcaC01g01013 Brassica carinata HOM05D005141 ORTHO05D006250 2.4e-33 147.5 332 36.7
A08p18120 Brassica napus HOM05D005141 ORTHO05D006250 9.3e-33 145.6 452 32.3
Thhalv10025562m.g Eutrema salsugineum HOM05D005141 ORTHO05D006250 1.6e-32 144.8 420 31.9
BcaB03g12752 Brassica carinata HOM05D005141 ORTHO05D006250 6.0e-32 142.9 357 34.2
SHI18604 Sapria himalayana HOM05D005141 ORTHO05D006250 1.0e-31 142.1 272 37.9
Aa31LG4G11720 Aethionema arabicum HOM05D005141 ORTHO05D006250 3.0e-31 140.6 415 34.5
BcaC09g52048 Brassica carinata HOM05D005141 ORTHO05D006250 6.7e-31 139.4 408 32.4
Glyma.17G205200 Glycine max HOM05D005141 ORTHO05D006250 9.0e-28 129.0 202 48.0
HPP92_009098 Vanilla planifolia HOM05D005141 ORTHO05D006250 1.5e-27 128.3 355 34.1
Aqoxy7G01897 Aquilegia oxysepala HOM05D005141 ORTHO05D006250 4.9e-26 123.2 289 39.4
SEGI_18535 Sequoiadendron giganteum HOM05D005141 ORTHO05D006250 9.3e-25 119.0 280 34.6
unitig_37.g12225 Utricularia gibba HOM05D005141 ORTHO05D006250 1.3e-23 115.2 331 32.6
C01p06380 Brassica napus HOM05D005141 ORTHO05D006250 3.9e-23 113.6 271 36.9
AagrBONN_evm.TU.Sc2ySwM_117.408 Anthoceros agrestis HOM05D005141 ORTHO05D006250 1.9e-22 111.3 254 34.3
A01p05810 Brassica napus HOM05D005141 ORTHO05D006250 1.9e-22 111.3 271 36.9
BraA01t00550Z Brassica rapa HOM05D005141 ORTHO05D006250 4.3e-22 110.2 243 37.4
Ah.10g025860 Amaranthus hybridus HOM05D005141 ORTHO05D006250 7.4e-22 109.4 207 39.6
BolC1t00634H Brassica oleracea HOM05D005141 ORTHO05D006250 1.6e-21 108.2 255 37.3
Pp3c22_12420 Physcomitrium patens HOM05D005141 ORTHO05D006250 3.7e-21 107.1 173 39.3
unitig_46.g18533 Utricularia gibba HOM05D005141 ORTHO05D006250 6.2e-21 106.3 162 46.9
Pp3c19_8700 Physcomitrium patens HOM05D005141 ORTHO05D006250 6.5e-18 96.3 172 37.2
CSS0000568 Camellia sinensis var. sinensis HOM05D005141 ORTHO05D006250 8.4e-18 95.9 128 50.0
SMO143G0273 Selaginella moellendorffii HOM05D005141 ORTHO05D006250 1.1e-17 95.5 154 39.6
Aqoxy81s001 Aquilegia oxysepala HOM05D005141 ORTHO05D006250 1.3e-15 88.6 135 46.7
Haze_10527 Corylus avellana HOM05D005141 ORTHO05D006250 2.3e-15 87.8 83 51.8
Mapoly0079s0053 Marchantia polymorpha HOM05D005141 ORTHO05D006250 6.7e-15 86.3 184 35.3
Cpa.g.sc91.24 Carica papaya HOM05D005141 ORTHO05D006250 5.3e-12 76.6 106 46.2
BcaC08g44885 Brassica carinata HOM05D005141 ORTHO05D006250 7.7e-11 72.8 177 31.6
C06p25010 Brassica napus HOM05D000698 ORTHO05D006250 1.7e-10 71.6 194 31.4
A06p26660 Brassica napus HOM05D005141 ORTHO05D006250 4.2e-09 67.0 180 32.2


User provided reference genes

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