Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG08G012660 Citrullus lanatus HOM05D006706 ORTHO05D008794 5.9e-172 607.4 308 100.0
MELO3C011186.2 Cucumis melo HOM05D006706 ORTHO05D008794 3.9e-67 259.2 206 69.9
Sed0007748 Sechium edule HOM05D006706 ORTHO05D008794 8.2e-65 251.5 206 68.9
CsaV3_2G031370 Cucumis sativus L. HOM05D006706 ORTHO05D008794 4.1e-56 222.6 156 74.4
CiPaw.08G020300 Carya illinoinensis HOM05D006706 ORTHO05D008794 4.2e-45 186.0 203 53.2
Cpa.g.sc23.24 Carica papaya HOM05D006706 ORTHO05D008794 1.2e-44 184.5 161 58.4
Cfa013279 Carpinus fangiana HOM05D006706 ORTHO05D008794 3.6e-44 183.0 202 53.5
Psat0s1809g0040 Pisum sativum HOM05D006706 ORTHO05D008794 3.6e-44 183.0 181 56.4
Haze_21755 Corylus avellana HOM05D006706 ORTHO05D008794 6.1e-44 182.2 202 54.5
CANSAT78G2093 Cannabis sativa HOM05D006706 ORTHO05D008794 4.0e-43 179.5 204 51.0
Potri.018G008000 Populus trichocarpa HOM05D006706 ORTHO05D008794 4.0e-43 179.5 203 53.2
QL12p025335 Quercus lobata HOM05D006706 ORTHO05D008794 4.0e-43 179.5 198 55.6
CDE02G4751 Ceratophyllum demersum HOM05D006706 ORTHO05D008794 5.2e-43 179.1 173 60.1
CiPaw.07G211900 Carya illinoinensis HOM05D006706 ORTHO05D008794 8.8e-43 178.3 155 61.9
PSO170G0804 Papaver somniferum HOM05D006706 ORTHO05D008794 8.8e-43 178.3 151 61.6
Gorai.010G122100 Gossypium raimondii HOM05D006706 ORTHO05D008794 1.2e-42 177.9 187 55.1
Phvul.009G101700 Phaseolus vulgaris HOM05D006706 ORTHO05D008794 1.2e-42 177.9 205 52.7
VMungo1309G0608 Vigna mungo HOM05D006706 ORTHO05D008794 1.2e-42 177.9 199 51.8
Atru.chr7.2653 Acer truncatum HOM05D006706 ORTHO05D008794 1.5e-42 177.6 134 67.2
Glyma.04G075900 Glycine max HOM05D006706 ORTHO05D008794 2.0e-42 177.2 171 57.9
Ciclev10009845m.g Citrus clementina HOM05D006706 ORTHO05D008794 2.6e-42 176.8 144 63.2
Glyma.06G077100 Glycine max HOM05D006706 ORTHO05D008794 2.6e-42 176.8 162 59.9
Lsat_1_v5_gn_3_19441 Lactuca sativa HOM05D006706 ORTHO05D008794 2.6e-42 176.8 165 57.6
Lalb_Chr23g0269141 Lupinus albus HOM05D006706 ORTHO05D008794 2.6e-42 176.8 173 57.2
ECA246G3311 Erigeron canadensis HOM05D006706 ORTHO05D008794 3.4e-42 176.4 181 52.5
Migut.A00436 Erythranthe guttata HOM05D006706 ORTHO05D008794 3.4e-42 176.4 162 58.6
Sabra18G0015100 Salix brachista HOM05D006706 ORTHO05D008794 3.4e-42 176.4 203 52.7
Haze_21752 Corylus avellana HOM05D006706 ORTHO05D008794 4.4e-42 176.0 142 64.1
TPR.G12362 Trifolium pratense HOM05D006706 ORTHO05D008794 4.4e-42 176.0 199 52.3
TWI34G0378 Tripterygium wilfordii HOM05D006706 ORTHO05D008794 4.4e-42 176.0 170 55.3
PSO063G0792 Papaver somniferum HOM05D006706 ORTHO05D008794 5.7e-42 175.6 205 51.7
arahy.Tifrunner.gnm1.ann1.G0PQAF Arachis hypogaea HOM05D006706 ORTHO05D008794 9.8e-42 174.9 200 52.5
HanXRQChr17g0538031 Helianthus annuus HOM05D006706 ORTHO05D008794 9.8e-42 174.9 167 54.5
MBI14_g10732_MAGBIO Magnolia biondii HOM05D006706 ORTHO05D008794 1.3e-41 174.5 183 57.4
Lj1g0012669 Lotus japonicus HOM05D006706 ORTHO05D008794 1.7e-41 174.1 159 59.7
Nn3g19671 Nelumbo nucifera HOM05D006706 ORTHO05D008794 1.7e-41 174.1 170 57.1
Rhsim07G0178100 Rhododendron simsii HOM05D006706 ORTHO05D008794 2.2e-41 173.7 188 52.7
vmacro05047 Vaccinium macrocarpon HOM05D006706 ORTHO05D008794 2.8e-41 173.3 131 66.4
RcHm_v2.0_Chr1g0366021 Rosa chinensis HOM05D006706 ORTHO05D008794 3.7e-41 172.9 204 51.0
Ca_15656_v3 Cicer arietinum L. HOM05D006706 ORTHO05D008794 4.8e-41 172.6 200 52.5
Duzib187G1270 Durio zibethinus HOM05D006706 ORTHO05D008794 4.8e-41 172.6 201 51.7
COL.COLO4_19024 Corchorus olitorius HOM05D006706 ORTHO05D008794 6.3e-41 172.2 194 54.6
Prupe.1G459500 Prunus persica HOM05D006706 ORTHO05D008794 6.3e-41 172.2 209 48.8
AT5G10700 Arabidopsis thaliana HOM05D006706 ORTHO05D008794 8.3e-41 171.8 202 51.5
Ca_15664_v3 Cicer arietinum L. HOM05D006706 ORTHO05D008794 8.3e-41 171.8 164 57.3
FAN27G0070 Fragaria x ananassa HOM05D006706 ORTHO05D008794 8.3e-41 171.8 204 50.0
GSVIVG01035513001 Vitis vinifera HOM05D006706 ORTHO05D008794 1.1e-40 171.4 166 57.8
Manes.03G004300 Manihot esculenta HOM05D006706 ORTHO05D008794 1.4e-40 171.0 169 55.0
THA.LOC104814973 Tarenaya hassleriana HOM05D006706 ORTHO05D008794 1.4e-40 171.0 210 49.5
Aa31LG3G16430 Aethionema arabicum HOM05D006706 ORTHO05D008794 1.8e-40 170.6 205 49.8
arahy.Tifrunner.gnm1.ann1.92NGGW Arachis hypogaea HOM05D006706 ORTHO05D008794 1.8e-40 170.6 134 64.2
CARHR202620 Cardamine hirsuta HOM05D006706 ORTHO05D008794 1.8e-40 170.6 136 64.0
FvH4_2g36680 Fragaria vesca HOM05D006706 ORTHO05D008794 1.8e-40 170.6 204 49.5
Aqoxy7G02908 Aquilegia oxysepala HOM05D006706 ORTHO05D008794 2.4e-40 170.2 179 54.2
BcaB01g06271 Brassica carinata HOM05D006706 ORTHO05D008794 2.4e-40 170.2 193 50.8
FAN20G0608 Fragaria x ananassa HOM05D006706 ORTHO05D008794 2.4e-40 170.2 204 49.5
Hund07113 Selenicereus undatus HOM05D006706 ORTHO05D008794 2.4e-40 170.2 134 64.2
Lj7C748T8 Lonicera japonica HOM05D006706 ORTHO05D008794 3.1e-40 169.9 158 58.2
Eucgr.C04010 Eucalyptus grandis HOM05D006706 ORTHO05D008794 4.1e-40 169.5 147 60.5
Medtr3g108900 Medicago truncatula HOM05D006706 ORTHO05D008794 4.1e-40 169.5 168 56.0
AL6G21240 Arabidopsis lyrata HOM05D006706 ORTHO05D008794 5.4e-40 169.1 209 50.7
DCAR_006314 Daucus carota HOM05D006706 ORTHO05D008794 7.0e-40 168.7 143 59.4
Dinv26561 Davidia involucrata HOM05D006706 ORTHO05D008794 7.0e-40 168.7 162 56.2
Oeu018568.1 Olea europaea HOM05D006706 ORTHO05D008794 7.0e-40 168.7 165 55.2
RcHm_v2.0_Chr6g0305051 Rosa chinensis HOM05D006706 ORTHO05D008794 7.0e-40 168.7 134 65.7
CSS0022194 Camellia sinensis var. sinensis HOM05D006706 ORTHO05D008794 1.2e-39 167.9 167 56.9
CAN.G566.65 Capsicum annuum HOM05D006706 ORTHO05D008794 1.2e-39 167.9 141 60.3
AUR62020287 Chenopodium quinoa HOM05D006706 ORTHO05D008794 1.2e-39 167.9 146 61.6
Duzib168G0001 Durio zibethinus HOM05D006706 ORTHO05D008794 1.2e-39 167.9 192 52.1
MD08G1127800 Malus domestica HOM05D006706 ORTHO05D008794 1.2e-39 167.9 206 52.4
Sp6g32760 Schrenkiella parvula HOM05D006706 ORTHO05D008794 1.2e-39 167.9 162 55.6
Sopen12g032240 Solanum pennellii HOM05D006706 ORTHO05D008794 1.2e-39 167.9 131 64.1
BraA03t09810Z Brassica rapa HOM05D006706 ORTHO05D008794 1.6e-39 167.5 194 50.5
Peaxi162Scf00459g00840 Petunia axillaris HOM05D006706 ORTHO05D008794 1.6e-39 167.5 206 48.1
BcaB01g05507 Brassica carinata HOM05D006706 ORTHO05D008794 2.0e-39 167.2 203 48.8
A03p04700 Brassica napus HOM05D006706 ORTHO05D008794 2.0e-39 167.2 193 50.3
C03p05410 Brassica napus HOM05D006706 ORTHO05D008794 2.0e-39 167.2 203 48.8
Thecc.09G008100 Theobroma cacao HOM05D006706 ORTHO05D008794 2.0e-39 167.2 202 50.5
PGSC0003DMG400029370 Solanum tuberosum HOM05D006706 ORTHO05D008794 3.5e-39 166.4 131 64.1
AUR62037716 Chenopodium quinoa HOM05D006706 ORTHO05D008794 4.5e-39 166.0 154 57.8
Nitab4.5_0010092g0010 Nicotiana tabacum HOM05D006706 ORTHO05D008794 4.5e-39 166.0 132 62.9
MSTRG.25780 Avicennia marina HOM05D006706 ORTHO05D008794 5.9e-39 165.6 162 56.2
Solyc12g096390.2 Solanum lycopersicum HOM05D006706 ORTHO05D008794 5.9e-39 165.6 166 55.4
Actinidia22256 Actinidia chinensis HOM05D006706 ORTHO05D008794 7.7e-39 165.2 189 49.7
Carub.0006s0917 Capsella rubella HOM05D006706 ORTHO05D008794 1.0e-38 164.9 208 50.0
SalBow4G1165 Salvia bowleyana HOM05D006706 ORTHO05D008794 1.0e-38 164.9 130 62.3
Nitab4.5_0001159g0140 Nicotiana tabacum HOM05D006706 ORTHO05D008794 1.7e-38 164.1 132 61.4
BcaC04g19291 Brassica carinata HOM05D006706 ORTHO05D008794 2.3e-38 163.7 135 61.5
ATR0580G320 Amborella trichopoda HOM05D006706 ORTHO05D008794 5.0e-38 162.5 149 59.1
SGA_v2.0_scaffold193G40663 Striga asiatica HOM05D006706 ORTHO05D008794 6.6e-38 162.2 131 62.6
PGR044G2738 Punica granatum HOM05D006706 ORTHO05D008794 8.6e-38 161.8 184 50.0
SEGI_18071 Sequoiadendron giganteum HOM05D006706 ORTHO05D008794 8.6e-38 161.8 186 48.4
Thhalv10014763m.g Eutrema salsugineum HOM05D006706 ORTHO05D008794 2.5e-37 160.2 203 48.8
HPP92_021967 Vanilla planifolia HOM05D006706 ORTHO05D008794 1.5e-34 151.0 149 53.7
Zm00001eb071580 Zea mays HOM05D006706 ORTHO05D008794 2.6e-34 150.2 159 49.1
Os04g0605200 Oryza sativa ssp. japonica HOM05D006706 ORTHO05D008794 3.4e-34 149.8 140 52.1
Ah.10g024780 Amaranthus hybridus HOM05D006706 ORTHO05D008794 4.4e-34 149.4 127 59.8
AagrBONN_evm.TU.Sc2ySwM_228.645 Anthoceros agrestis HOM05D000036 ORTHO05D038461 5.7e-34 149.1 155 50.3
HPP92_021941 Vanilla planifolia HOM05D006706 ORTHO05D008794 5.7e-34 149.1 199 46.2
unitig_21.g20325 Utricularia gibba HOM05D006706 ORTHO05D008794 2.8e-33 146.7 133 53.4
Pp3c18_3890 Physcomitrium patens HOM05D006706 ORTHO05D008794 6.3e-33 145.6 190 44.7
SMO203G0167 Selaginella moellendorffii HOM05D006706 ORTHO05D008794 1.6e-31 141.0 130 53.8
MD15G1107200 Malus domestica HOM05D006706 ORTHO05D008794 3.5e-31 139.8 146 55.5
Mapoly0013s0161 Marchantia polymorpha HOM05D006706 ORTHO05D008794 3.3e-29 133.3 136 48.5
TAR636G3689 Trochodendron aralioides HOM05D006706 ORTHO05D008794 2.8e-28 130.2 121 58.7
CBR_g3167 Chara braunii HOM05D006706 ORTHO05D008794 5.8e-26 122.5 144 46.5
Cre10.g449350 Chlamydomonas reinhardtii HOM05D006706 ORTHO05D008794 1.4e-24 117.9 154 43.5
Gohir.A06G105300 Gossypium hirsutum HOM05D006706 ORTHO05D008794 3.2e-24 116.7 123 52.0
Gohir.D06G107400 Gossypium hirsutum HOM05D006706 ORTHO05D008794 9.2e-24 115.2 119 55.5
MCO07G367 Micromonas commoda HOM05D006706 ORTHO05D008794 1.6e-23 114.4 138 43.5
Sc06g0000170 Simmondsia chinensis HOM05D006706 ORTHO05D008794 5.6e-21 105.9 72 68.1
CDE06G2578 Ceratophyllum demersum HOM05D006706 ORTHO05D008794 5.4e-16 89.4 87 56.3
EL10Ac2g02413 Beta vulgaris HOM05D006706 ORTHO05D008794 7.8e-15 85.5 56 73.2
PRCOL_00004161 Prasinoderma coloniale HOM05D006706 ORTHO05D008794 2.5e-13 80.5 139 37.4
A10p26910 Brassica napus HOM05D006706 ORTHO05D028018 5.2e-11 72.8 107 47.7
Haze_27087 Corylus avellana HOM05D006706 ORTHO05D008794 6.8e-11 72.4 132 34.8


User provided reference genes

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