Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG08G012430 Citrullus lanatus HOM05D003500 ORTHO05D003919 1.7e-152 542.7 293 100.0
CsaV3_2G031120 Cucumis sativus L. HOM05D003500 ORTHO05D003919 7.7e-121 437.6 294 82.0
MELO3C011162.2 Cucumis melo HOM05D003500 ORTHO05D003919 2.9e-120 435.6 293 81.6
Sed0000644 Sechium edule HOM05D003500 ORTHO05D003919 2.6e-76 289.7 227 74.9
CiPaw.07G208500 Carya illinoinensis HOM05D003500 ORTHO05D003919 2.8e-46 189.9 295 43.4
QL12p026085 Quercus lobata HOM05D003500 ORTHO05D003919 1.4e-45 187.6 292 44.5
Potri.018G035800 Populus trichocarpa HOM05D003500 ORTHO05D003919 2.0e-44 183.7 290 40.7
Cfa013328 Carpinus fangiana HOM05D003500 ORTHO05D003919 5.8e-44 182.2 301 41.5
Haze_21819 Corylus avellana HOM05D003500 ORTHO05D003919 9.9e-44 181.4 301 42.5
TAR624G1157 Trochodendron aralioides HOM05D003500 ORTHO05D003919 3.5e-41 172.9 297 41.8
Sabra18G0036300 Salix brachista HOM05D003500 ORTHO05D003919 3.9e-40 169.5 290 40.0
Ciclev10009124m.g Citrus clementina HOM05D003500 ORTHO05D003919 1.4e-37 161.0 299 40.8
Dinv14210 Davidia involucrata HOM05D003500 ORTHO05D003919 1.5e-36 157.5 296 40.9
FAN20G2191 Fragaria x ananassa HOM05D003500 ORTHO05D003919 1.7e-35 154.1 295 40.3
Lj8A606T22 Lonicera japonica HOM05D003500 ORTHO05D003919 2.9e-35 153.3 307 39.4
RcHm_v2.0_Chr6g0305551 Rosa chinensis HOM05D003500 ORTHO05D003919 1.1e-34 151.4 292 42.1
Gohir.D07G028000 Gossypium hirsutum HOM05D003500 ORTHO05D003919 2.5e-34 150.2 293 38.2
FvH4_2g36330 Fragaria vesca HOM05D003500 ORTHO05D003919 9.3e-34 148.3 290 39.3
Rhsim07G0154900 Rhododendron simsii HOM05D003500 ORTHO05D003919 1.2e-33 147.9 319 35.1
Eucgr.C02880 Eucalyptus grandis HOM05D003500 ORTHO05D003919 6.0e-33 145.6 297 36.4
Actinidia14650 Actinidia chinensis HOM05D003500 ORTHO05D003919 2.3e-32 143.7 296 37.2
FAN27G2449 Fragaria x ananassa HOM05D003500 ORTHO05D003919 3.0e-32 143.3 290 39.0
Actinidia15719 Actinidia chinensis HOM05D003500 ORTHO05D003919 3.9e-32 142.9 297 38.7
Gohir.A07G024400 Gossypium hirsutum HOM05D003500 ORTHO05D003919 3.9e-32 142.9 293 36.5
Thecc.09G037900 Theobroma cacao HOM05D003500 ORTHO05D003919 6.7e-32 142.1 297 38.4
Duzib168G0612 Durio zibethinus HOM05D003500 ORTHO05D003919 1.9e-31 140.6 293 37.2
Manes.16G069800 Manihot esculenta HOM05D003500 ORTHO05D003919 5.7e-31 139.0 292 38.7
Prupe.1G454700 Prunus persica HOM05D003500 ORTHO05D003919 5.7e-31 139.0 299 36.5
Hma1.2p1_0140F.1_g063720 Hydrangea macrophylla HOM05D003500 ORTHO05D003919 7.4e-31 138.7 305 34.4
Atru.chr7.2303 Acer truncatum HOM05D003500 ORTHO05D003919 3.7e-30 136.3 330 37.0
MD15G1099900 Malus domestica HOM05D003500 ORTHO05D003919 8.2e-30 135.2 313 38.3
arahy.Tifrunner.gnm1.ann1.V41S3G Arachis hypogaea HOM05D003500 ORTHO05D003919 1.1e-29 134.8 296 36.5
Gorai.001G029300 Gossypium raimondii HOM05D003500 ORTHO05D003919 1.1e-29 134.8 287 34.8
Lalb_Chr03g0029341 Lupinus albus HOM05D003500 ORTHO05D003919 6.9e-29 132.1 296 37.8
TWI32G0121 Tripterygium wilfordii HOM05D003500 ORTHO05D003919 9.0e-29 131.7 298 33.6
CANSAT35G1218 Cannabis sativa HOM05D003500 ORTHO05D003919 1.2e-28 131.3 302 37.1
Dinv30238 Davidia involucrata HOM05D003500 ORTHO05D003919 3.4e-28 129.8 282 38.3
AT4G32680 Arabidopsis thaliana HOM05D003500 ORTHO05D003919 1.0e-27 128.3 303 34.7
Duzib187G1538 Durio zibethinus HOM05D003500 ORTHO05D003919 1.7e-27 127.5 299 38.1
PGR044G1892 Punica granatum HOM05D003500 ORTHO05D003919 2.9e-27 126.7 285 37.2
arahy.Tifrunner.gnm1.ann1.HR3BJH Arachis hypogaea HOM05D003500 ORTHO05D003919 5.0e-27 125.9 286 34.6
A01p05660 Brassica napus HOM05D003500 ORTHO05D003919 1.1e-26 124.8 305 34.4
AUR62024822 Chenopodium quinoa HOM05D003500 ORTHO05D003919 1.9e-26 124.0 294 38.4
Sc09g0008940 Simmondsia chinensis HOM05D003500 ORTHO05D003919 1.9e-26 124.0 292 36.0
CSS0048332 Camellia sinensis var. sinensis HOM05D003500 ORTHO05D003919 2.5e-26 123.6 296 33.8
DCAR_003060 Daucus carota HOM05D003500 ORTHO05D003919 2.5e-26 123.6 297 36.0
GSVIVG01035753001 Vitis vinifera HOM05D003500 ORTHO05D003919 2.5e-26 123.6 303 35.0
TPR.G31013 Trifolium pratense HOM05D003500 ORTHO05D003919 3.2e-26 123.2 290 34.1
THA.LOC104818564 Tarenaya hassleriana HOM05D003500 ORTHO05D003919 5.5e-26 122.5 296 35.8
AUR62032393 Chenopodium quinoa HOM05D003500 ORTHO05D003919 9.3e-26 121.7 294 37.8
Thhalv10025931m.g Eutrema salsugineum HOM05D003500 ORTHO05D003919 1.6e-25 120.9 294 33.0
AL7G19060 Arabidopsis lyrata HOM05D003500 ORTHO05D003919 2.1e-25 120.6 296 34.1
Ca_26668_v3 Cicer arietinum L. HOM05D003500 ORTHO05D003919 3.5e-25 119.8 299 37.1
TAR636G0685 Trochodendron aralioides HOM05D003500 ORTHO05D003919 3.5e-25 119.8 271 38.0
BcaB03g12755 Brassica carinata HOM05D003500 ORTHO05D003919 4.6e-25 119.4 297 34.3
Nitab4.5_0002393g0050 Nicotiana tabacum HOM05D003500 ORTHO05D003919 4.6e-25 119.4 298 36.6
Sp7g30440 Schrenkiella parvula HOM05D003500 ORTHO05D003919 4.6e-25 119.4 298 32.6
Carub.0007s0785 Capsella rubella HOM05D003500 ORTHO05D003919 6.1e-25 119.0 297 35.0
TPR.G21779 Trifolium pratense HOM05D003500 ORTHO05D003919 6.1e-25 119.0 290 34.5
Sopen08g021950 Solanum pennellii HOM05D003500 ORTHO05D003919 1.0e-24 118.2 296 34.8
SGA_v2.0_scaffold169G38640 Striga asiatica HOM05D003500 ORTHO05D003919 3.0e-24 116.7 287 33.1
MD17G1194800 Malus domestica HOM05D003500 ORTHO05D003919 6.7e-24 115.5 295 35.9
CARHR240660 Cardamine hirsuta HOM05D003500 ORTHO05D003919 1.1e-23 114.8 290 33.1
Lsat_1_v5_gn_1_49081 Lactuca sativa HOM05D003500 ORTHO05D003919 1.5e-23 114.4 279 35.1
Solyc08g068060.3 Solanum lycopersicum HOM05D003500 ORTHO05D003919 1.5e-23 114.4 298 35.2
BraA08t33760Z Brassica rapa HOM05D003500 ORTHO05D003919 1.9e-23 114.0 299 33.4
Migut.E01507 Erythranthe guttata HOM05D003500 ORTHO05D003919 3.3e-23 113.2 292 34.2
Lj3g0003659 Lotus japonicus HOM05D003500 ORTHO05D003919 4.3e-23 112.8 292 36.0
BcaC09g52062 Brassica carinata HOM05D003500 ORTHO05D003919 7.4e-23 112.1 297 33.0
Medtr6g007370 Medicago truncatula HOM05D003500 ORTHO05D003919 7.4e-23 112.1 292 34.6
Medtr7g446310 Medicago truncatula HOM05D003500 ORTHO05D003919 7.4e-23 112.1 292 34.6
RcHm_v2.0_Chr2g0137891 Rosa chinensis HOM05D003500 ORTHO05D003919 9.7e-23 111.7 287 35.9
C03p87180 Brassica napus HOM05D003500 ORTHO05D003919 1.3e-22 111.3 292 32.9
BolC3t21020H Brassica oleracea HOM05D003500 ORTHO05D003919 1.3e-22 111.3 292 32.9
Cfa002069 Carpinus fangiana HOM05D003500 ORTHO05D003919 1.3e-22 111.3 292 34.9
CAN.G886.10 Capsicum annuum HOM05D003500 ORTHO05D003919 2.2e-22 110.5 317 32.5
HanXRQChr01g0029371 Helianthus annuus HOM05D003500 ORTHO05D003919 2.2e-22 110.5 291 32.6
PGSC0003DMG400014491 Solanum tuberosum HOM05D003500 ORTHO05D003919 3.7e-22 109.8 296 34.1
Haze_16428 Corylus avellana HOM05D003500 ORTHO05D003919 4.8e-22 109.4 292 35.3
VMungo0331G1412 Vigna mungo HOM05D003500 ORTHO05D003919 1.4e-21 107.8 308 34.4
Prupe.3G070800 Prunus persica HOM05D003500 ORTHO05D003919 1.8e-21 107.5 308 33.4
MSTRG.14007 Avicennia marina HOM05D003500 ORTHO05D003919 2.4e-21 107.1 294 33.0
FvH4_6g31220 Fragaria vesca HOM05D003500 ORTHO05D003919 2.4e-21 107.1 289 36.0
PGR102G2146 Punica granatum HOM05D003500 ORTHO05D003919 3.1e-21 106.7 294 34.0
Aqoxy7G01735 Aquilegia oxysepala HOM05D003500 ORTHO05D003919 4.1e-21 106.3 343 31.2
EL10Ac2g02525 Beta vulgaris HOM05D003500 ORTHO05D003919 4.1e-21 106.3 292 34.6
BcaC01g01007 Brassica carinata HOM05D003500 ORTHO05D003919 5.3e-21 105.9 296 32.1
FAN14G5419 Fragaria x ananassa HOM05D003500 ORTHO05D003919 6.9e-21 105.5 288 35.8
Aa31LG2G16940 Aethionema arabicum HOM05D003500 ORTHO05D003919 9.0e-21 105.1 300 33.7
Ciclev10027012m.g Citrus clementina HOM05D003500 ORTHO05D003919 9.0e-21 105.1 287 33.4
PSO782G3147 Papaver somniferum HOM05D003500 ORTHO05D003919 9.0e-21 105.1 348 31.9
Oeu014656.1 Olea europaea HOM05D003500 ORTHO05D003919 3.4e-20 103.2 131 42.7
TWI18G0570 Tripterygium wilfordii HOM05D003500 ORTHO05D003919 3.4e-20 103.2 296 34.1
VMungo1127G1234 Vigna mungo HOM05D003500 ORTHO05D003919 7.7e-20 102.1 291 32.6
Glyma.12G113900 Glycine max HOM05D003500 ORTHO05D003919 1.3e-19 101.3 289 32.2
Potri.003G055200 Populus trichocarpa HOM05D003500 ORTHO05D003919 1.3e-19 101.3 294 34.7
Nitab4.5_0000250g0140 Nicotiana tabacum HOM05D003500 ORTHO05D003919 2.2e-19 100.5 298 33.6
BraA01t00536Z Brassica rapa HOM05D003500 ORTHO05D003919 2.9e-19 100.1 297 32.0
Lalb_Chr04g0262681 Lupinus albus HOM05D003500 ORTHO05D003919 3.8e-19 99.8 305 31.8
BolC1t00621H Brassica oleracea HOM05D003500 ORTHO05D003919 6.5e-19 99.0 289 30.8
PSO063G0209 Papaver somniferum HOM05D003500 ORTHO05D003919 8.5e-19 98.6 348 31.9
Psat7g063400 Pisum sativum HOM05D003500 ORTHO05D003919 8.5e-19 98.6 296 30.7
Ah.10g025530 Amaranthus hybridus HOM05D003500 ORTHO05D003919 3.2e-18 96.7 290 31.7
vmacro05351 Vaccinium macrocarpon HOM05D003500 ORTHO05D003919 4.2e-18 96.3 270 33.3
CiPaw.01G239100 Carya illinoinensis HOM05D003500 ORTHO05D003919 7.2e-18 95.5 275 32.0
vmacro18911 Vaccinium macrocarpon HOM05D003500 ORTHO05D003919 9.4e-18 95.1 299 31.8
QL05p023510 Quercus lobata HOM05D003500 ORTHO05D003919 1.6e-17 94.4 162 39.5
Glyma.08G206700 Glycine max HOM05D003500 ORTHO05D003919 1.4e-16 91.3 321 32.1
Phvul.011G117800 Phaseolus vulgaris HOM05D003500 ORTHO05D003919 3.0e-16 90.1 292 29.5
Migut.D01030 Erythranthe guttata HOM05D003500 ORTHO05D003919 3.9e-16 89.7 301 33.6
Oeu000451.1 Olea europaea HOM05D003500 ORTHO05D003919 3.9e-16 89.7 304 32.6
Thecc.06G088400 Theobroma cacao HOM05D003500 ORTHO05D003919 3.9e-16 89.7 343 29.7
Sed0015651 Sechium edule HOM05D003500 ORTHO05D003919 6.7e-16 89.0 311 31.2
arahy.Tifrunner.gnm1.ann1.AD7SDK Arachis hypogaea HOM05D003500 ORTHO05D003919 1.5e-15 87.8 295 31.9
ECA248G2427 Erigeron canadensis HOM05D002222 ORTHO05D002354 2.5e-15 87.0 304 28.9
Sed0003187 Sechium edule HOM05D003500 ORTHO05D003919 2.5e-15 87.0 310 29.4
CsaV3_3G025090 Cucumis sativus L. HOM05D003500 ORTHO05D003919 3.3e-15 86.7 321 29.6
Sc12g0009290 Simmondsia chinensis HOM05D003500 ORTHO05D003919 5.7e-15 85.9 298 29.2
HPP92_005532 Vanilla planifolia HOM05D003500 ORTHO05D003919 5.7e-15 85.9 287 29.6
Peaxi162Scf00105g00615 Petunia axillaris HOM05D003500 ORTHO05D003919 7.4e-15 85.5 302 32.5
Dinv30507 Davidia involucrata HOM05D003500 ORTHO05D003919 9.7e-15 85.1 272 30.5
MBI11_g07535_MAGBIO Magnolia biondii HOM05D003500 ORTHO05D003919 9.7e-15 85.1 297 31.0
arahy.Tifrunner.gnm1.ann1.Y86J0E Arachis hypogaea HOM05D003500 ORTHO05D003919 1.7e-14 84.3 307 30.9
SalBow2G3431 Salvia bowleyana HOM05D003500 ORTHO05D003919 1.7e-14 84.3 285 30.5
Os01g0863400 Oryza sativa ssp. japonica HOM05D003500 ORTHO05D003919 2.2e-14 84.0 307 27.4
Potri.006G244600 Populus trichocarpa HOM05D003500 ORTHO05D003919 2.2e-14 84.0 259 32.4
Lj3g0021763 Lotus japonicus HOM05D003500 ORTHO05D003919 2.8e-14 83.6 294 32.7
ATR0051G010 Amborella trichopoda HOM05D003500 ORTHO05D003919 3.7e-14 83.2 165 40.0
COL.COLO4_30382 Corchorus olitorius HOM05D003500 ORTHO05D003919 3.7e-14 83.2 264 29.5
ClCG07G013080 Citrullus lanatus HOM05D003500 ORTHO05D003919 6.3e-14 82.4 315 30.5
Duzib235G1266 Durio zibethinus HOM05D003500 ORTHO05D003919 6.3e-14 82.4 147 37.4
Psat7g252240 Pisum sativum HOM05D003500 ORTHO05D003919 6.3e-14 82.4 308 32.5
THA.LOC104810618 Tarenaya hassleriana HOM05D003500 ORTHO05D003919 6.3e-14 82.4 288 30.6
C01p06230 Brassica napus HOM05D003500 ORTHO05D003919 8.2e-14 82.0 166 33.1
Ca_20390_v3 Cicer arietinum L. HOM05D003500 ORTHO05D003919 8.2e-14 82.0 284 31.3
Glyma.07G006100 Glycine max HOM05D003500 ORTHO05D003919 1.1e-13 81.6 312 31.4
Medtr4g012520 Medicago truncatula HOM05D003500 ORTHO05D003919 1.1e-13 81.6 290 33.1
AL7G19270 Arabidopsis lyrata HOM05D002156 ORTHO05D003919 2.4e-13 80.5 185 31.4
CANSAT56G2888 Cannabis sativa HOM05D003500 ORTHO05D003919 3.1e-13 80.1 137 38.0
Cc08_g08590 Coffea canephora HOM05D003500 ORTHO05D003919 3.1e-13 80.1 289 28.0
Eucgr.F03015 Eucalyptus grandis HOM05D003500 ORTHO05D003919 5.3e-13 79.3 285 30.2
unitig_32.g11118 Utricularia gibba HOM05D003500 ORTHO05D003919 5.3e-13 79.3 312 30.4
Manes.11G047100 Manihot esculenta HOM05D003500 ORTHO05D003919 9.1e-13 78.6 292 30.5
HanXRQChr17g0541731 Helianthus annuus HOM05D003500 ORTHO05D003919 1.2e-12 78.2 290 29.7
HanXRQChr02g0053631 Helianthus annuus HOM05D003500 ORTHO05D003919 2.0e-12 77.4 288 28.1
C06p07810 Brassica napus HOM05D003500 ORTHO05D003919 4.5e-12 76.3 286 29.4
Phvul.010G150500 Phaseolus vulgaris HOM05D003500 ORTHO05D003919 5.9e-12 75.9 330 29.7
A08p18080 Brassica napus HOM05D003500 ORTHO05D003919 1.0e-11 75.1 156 32.1
ECA233G0641 Erigeron canadensis HOM05D003500 ORTHO05D003919 1.0e-11 75.1 292 28.1
Gohir.D03G063800 Gossypium hirsutum HOM05D003500 ORTHO05D003919 1.3e-11 74.7 310 30.0
Carub.0001s4135 Capsella rubella HOM05D003500 ORTHO05D003919 2.2e-11 73.9 288 29.2
Gorai.002G059400 Gossypium raimondii HOM05D003500 ORTHO05D003919 2.9e-11 73.6 305 30.8
CARHR042490 Cardamine hirsuta HOM05D003500 ORTHO05D003919 3.8e-11 73.2 289 29.4
MSTRG.4733 Avicennia marina HOM05D003500 ORTHO05D003919 6.5e-11 72.4 285 28.8
BolC6t35867H Brassica oleracea HOM05D003500 ORTHO05D003919 6.5e-11 72.4 286 28.7
Zm00001eb366780 Zea mays HOM05D039918 ORTHO05D003919 1.1e-10 71.6 339 28.3
Gohir.A02G121400 Gossypium hirsutum HOM05D003500 ORTHO05D003919 2.5e-10 70.5 305 30.5
Nitab4.5_0005851g0060 Nicotiana tabacum HOM05D003500 ORTHO05D003919 2.5e-10 70.5 157 33.8
Hund25650 Selenicereus undatus HOM05D003500 ORTHO05D003919 2.5e-10 70.5 292 24.7
Peaxi162Scf00015g10038 Petunia axillaris HOM05D003500 ORTHO05D003919 3.2e-10 70.1 157 33.1
BraA06t23403Z Brassica rapa HOM05D003500 ORTHO05D003919 5.5e-10 69.3 286 28.0
Thhalv10012010m.g Eutrema salsugineum HOM05D003500 ORTHO05D003919 5.5e-10 69.3 284 29.2
A06p01860 Brassica napus HOM05D003500 ORTHO05D003919 9.4e-10 68.6 286 28.0
Nitab4.5_0000671g0100 Nicotiana tabacum HOM05D003500 ORTHO05D003919 9.4e-10 68.6 230 29.1
SGA_v2.0_scaffold68G23002 Striga asiatica HOM05D003500 ORTHO05D003919 1.2e-09 68.2 286 29.7
AT1G52343 Arabidopsis thaliana HOM05D003500 ORTHO05D003919 4.7e-09 66.2 283 30.0
Solyc03g120180.3 Solanum lycopersicum HOM05D003500 ORTHO05D003919 4.7e-09 66.2 132 34.8
Sp1g38960 Schrenkiella parvula HOM05D003500 ORTHO05D003919 6.1e-09 65.9 286 28.7
Migut.I00867 Erythranthe guttata HOM05D003500 ORTHO05D003919 7.9e-09 65.5 284 28.5
SalBow2G0526 Salvia bowleyana HOM05D003500 ORTHO05D003919 7.9e-09 65.5 296 28.0
Manes.04G123600 Manihot esculenta HOM05D003500 ORTHO05D003919 1.8e-08 64.3 276 27.9
Sabra06G0191500 Salix brachista HOM05D003500 ORTHO05D003919 1.8e-08 64.3 193 32.6
Peaxi162Scf01026g00254 Petunia axillaris HOM05D003500 ORTHO05D003919 3.9e-08 63.2 285 29.1
BcaC08g43415 Brassica carinata HOM05D003500 ORTHO05D003919 1.5e-07 61.2 278 27.0
SGA_v2.0_scaffold37G14827 Striga asiatica HOM05D003500 ORTHO05D003919 2.0e-07 60.8 296 28.0
Rhsim08G0221500 Rhododendron simsii HOM05D003500 ORTHO05D003919 4.4e-07 59.7 230 26.5
BcaB02g11002 Brassica carinata HOM05D003500 ORTHO05D003919 5.7e-07 59.3 278 27.0
Mapoly0020s0159 Marchantia polymorpha HOM05D003500 ORTHO05D003919 5.7e-07 59.3 302 27.8
Lalb_Chr01g0012691 Lupinus albus HOM05D003500 ORTHO05D003919 7.4e-07 58.9 169 31.4
Lsat_1_v5_gn_6_63900 Lactuca sativa HOM05D003500 ORTHO05D003919 2.8e-06 57.0 277 24.9
Actinidia32755 Actinidia chinensis HOM05D003500 ORTHO05D003919 4.8e-06 56.2 288 27.4
Cpa.g.sc205.12 Carica papaya HOM05D003500 ORTHO05D003919 4.8e-06 56.2 70 47.1


User provided reference genes

Program Settings