Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG08G012320 Citrullus lanatus HOM05D004021 ORTHO05D003767 0.0e+00 2378.2 1194 100.0
CsaV3_2G030990 Cucumis sativus L. HOM05D004021 ORTHO05D003767 0.0e+00 1743.8 1208 76.4
MELO3C011152.2 Cucumis melo HOM05D004021 ORTHO05D003767 0.0e+00 1742.2 1207 76.5
Sed0002796 Sechium edule HOM05D004021 ORTHO05D003767 0.0e+00 1367.4 1218 63.8
Cfa013353 Carpinus fangiana HOM05D004021 ORTHO05D003767 4.7e-108 397.1 1300 31.0
QL12p029472 Quercus lobata HOM05D004021 ORTHO05D003767 1.6e-103 382.1 1288 29.0
CiPaw.07G205800 Carya illinoinensis HOM05D004021 ORTHO05D003767 1.3e-102 379.0 1321 30.0
Haze_21872 Corylus avellana HOM05D004021 ORTHO05D003767 1.1e-101 375.9 1352 30.3
Manes.16G071666 Manihot esculenta HOM05D004021 ORTHO05D003767 3.7e-97 360.9 1300 28.7
Potri.006G240500 Populus trichocarpa HOM05D004021 ORTHO05D003767 1.7e-94 352.1 1312 27.4
Sabra18G0039500 Salix brachista HOM05D004021 ORTHO05D003767 3.0e-94 351.3 1303 28.2
Potri.018G039500 Populus trichocarpa HOM05D004021 ORTHO05D003767 1.1e-88 332.8 1311 27.8
Sabra06G0188100 Salix brachista HOM05D004021 ORTHO05D003767 6.0e-87 327.0 1310 27.3
Ciclev10007267m.g Citrus clementina HOM05D004021 ORTHO05D003767 3.3e-85 321.2 1280 28.1
CiPaw.08G024400 Carya illinoinensis HOM05D004021 ORTHO05D003767 5.6e-85 320.5 1294 28.1
Thecc.09G042000 Theobroma cacao HOM05D004021 ORTHO05D003767 3.1e-83 314.7 1259 28.5
Sed0007846 Sechium edule HOM05D004021 ORTHO05D003767 5.4e-80 303.9 1253 29.1
ClCG11G015210 Citrullus lanatus HOM05D004021 ORTHO05D003767 7.1e-80 303.5 1205 29.3
CsaV3_3G048630 Cucumis sativus L. HOM05D004021 ORTHO05D003767 4.6e-79 300.8 1237 28.6
CANSAT25G3821 Cannabis sativa HOM05D004021 ORTHO05D003767 5.1e-78 297.4 1340 26.9
Duzib150G1483 Durio zibethinus HOM05D004021 ORTHO05D003767 5.1e-78 297.4 1271 27.6
Gohir.A07G023000 Gossypium hirsutum HOM05D004021 ORTHO05D003767 5.6e-77 293.9 1280 27.6
Gorai.001G027600 Gossypium raimondii HOM05D004021 ORTHO05D003767 5.6e-77 293.9 1280 27.5
MELO3C003457.2 Cucumis melo HOM05D004021 ORTHO05D003767 2.1e-76 292.0 1218 28.7
Dinv14242 Davidia involucrata HOM05D004021 ORTHO05D003767 8.9e-75 286.6 1314 28.8
RcHm_v2.0_Chr6g0305941 Rosa chinensis HOM05D004021 ORTHO05D003767 4.9e-73 280.8 1268 28.4
Gohir.A07G023100 Gossypium hirsutum HOM05D004021 ORTHO05D003767 5.4e-72 277.3 1256 27.0
Prupe.1G450900 Prunus persica HOM05D004021 ORTHO05D003767 5.4e-72 277.3 1265 27.4
Dinv30267 Davidia involucrata HOM05D004021 ORTHO05D003767 7.1e-72 276.9 1316 27.6
Duzib187G0651 Durio zibethinus HOM05D004021 ORTHO05D003767 9.2e-72 276.6 1284 27.1
Gohir.D07G026700 Gossypium hirsutum HOM05D004021 ORTHO05D003767 6.0e-71 273.9 1255 26.5
FAN15G2992 Fragaria x ananassa HOM05D004021 ORTHO05D003767 3.9e-70 271.2 1290 27.2
FAN27G1714 Fragaria x ananassa HOM05D004021 ORTHO05D003767 6.6e-70 270.4 1294 27.2
FAN20G2231 Fragaria x ananassa HOM05D004021 ORTHO05D003767 8.6e-70 270.0 1290 27.1
FvH4_2g35880 Fragaria vesca HOM05D004021 ORTHO05D003767 1.9e-69 268.9 1290 27.3
Gorai.001G027700 Gossypium raimondii HOM05D004021 ORTHO05D003767 1.9e-69 268.9 1257 26.4
COL.COLO4_18677 Corchorus olitorius HOM05D004021 ORTHO05D003767 5.6e-69 267.3 1273 27.3
Duzib168G2343 Durio zibethinus HOM05D004021 ORTHO05D003767 4.7e-68 264.2 1226 26.7
TPR.G1392 Trifolium pratense HOM05D004021 ORTHO05D003767 1.5e-66 259.2 1225 28.4
Glyma.06G083500 Glycine max HOM05D004021 ORTHO05D003767 1.3e-65 256.1 1254 27.8
Psat5g022840 Pisum sativum HOM05D004021 ORTHO05D003767 1.7e-65 255.8 1227 27.1
Gohir.D07G026600 Gossypium hirsutum HOM05D004021 ORTHO05D003767 1.1e-64 253.1 1071 27.9
Psat5g022920 Pisum sativum HOM05D004021 ORTHO05D003767 2.4e-64 251.9 1245 26.9
TWI63G0612 Tripterygium wilfordii HOM05D004021 ORTHO05D003767 7.1e-64 250.4 1233 26.8
Medtr3g110132 Medicago truncatula HOM05D004021 ORTHO05D003767 2.1e-63 248.8 1237 28.2
Glyma.04G081800 Glycine max HOM05D004021 ORTHO05D003767 1.4e-59 236.1 1236 27.5
Lj1g0012897 Lotus japonicus HOM05D004021 ORTHO05D003767 3.1e-59 235.0 1253 27.6
Phvul.009G107600 Phaseolus vulgaris HOM05D004021 ORTHO05D003767 5.3e-59 234.2 1247 27.1
Medtr3g110082 Medicago truncatula HOM05D004021 ORTHO05D003767 6.9e-59 233.8 1237 27.7
VMungo1309G0329 Vigna mungo HOM05D004021 ORTHO05D003767 4.5e-58 231.1 1245 26.6
Ca_15608_v3 Cicer arietinum L. HOM05D004021 ORTHO05D003767 1.0e-54 219.9 1206 27.2
Lalb_Chr11g0064441 Lupinus albus HOM05D004021 ORTHO05D003767 1.6e-52 212.6 1262 26.5
MD08G1116300 Malus domestica HOM05D004021 ORTHO05D003767 4.5e-50 204.5 1273 26.7
TAR383G0364 Trochodendron aralioides HOM05D004021 ORTHO05D003767 4.9e-49 201.1 1432 23.2
Lalb_Chr11g0064431 Lupinus albus HOM05D004021 ORTHO05D003767 2.4e-48 198.7 1206 26.2
arahy.Tifrunner.gnm1.ann1.QM1LQ0 Arachis hypogaea HOM05D004021 ORTHO05D003767 6.0e-47 194.1 1247 25.8
Lalb_Chr08g0243171 Lupinus albus HOM05D004021 ORTHO05D003767 3.0e-46 191.8 1256 25.3
Lalb_Chr01g0011141 Lupinus albus HOM05D004021 ORTHO05D003767 7.6e-42 177.2 1247 25.7
GSVIVG01035651001 Vitis vinifera HOM05D004021 ORTHO05D003767 1.0e-41 176.8 1015 24.3
Atru.chr7.2140 Acer truncatum HOM05D004021 ORTHO05D003767 1.7e-41 176.0 781 27.7
TAR626G0792 Trochodendron aralioides HOM05D004021 ORTHO05D003767 8.4e-41 173.7 557 30.2
MD15G1096000 Malus domestica HOM05D004021 ORTHO05D003767 7.9e-39 167.2 1079 25.9
Rhsim07G0152700 Rhododendron simsii HOM05D004021 ORTHO05D003767 4.3e-37 161.4 1279 24.5
PGR044G0442 Punica granatum HOM05D004021 ORTHO05D003767 1.4e-35 156.4 1289 24.5
Actinidia14666 Actinidia chinensis HOM05D004021 ORTHO05D003767 2.4e-35 155.6 1338 23.7
Eucgr.C02901 Eucalyptus grandis HOM05D004021 ORTHO05D003767 5.3e-35 154.5 1242 24.6
CSS0009602 Camellia sinensis var. sinensis HOM05D004021 ORTHO05D003767 3.8e-33 148.3 1316 23.6
Lj8A589G31 Lonicera japonica HOM05D004021 ORTHO05D003767 1.0e-30 140.2 1297 24.0
THA.LOC104814779 Tarenaya hassleriana HOM05D004021 ORTHO05D003767 1.1e-29 136.7 1295 23.9
AL6G22200 Arabidopsis lyrata HOM05D004021 ORTHO05D003767 4.3e-29 134.8 1230 24.1
Sp6g32070 Schrenkiella parvula HOM05D004021 ORTHO05D003767 6.3e-28 131.0 1224 23.9
Eucgr.E03518 Eucalyptus grandis HOM05D004021 ORTHO05D003767 6.9e-27 127.5 622 27.3
Dinv38014 Davidia involucrata HOM05D004021 ORTHO05D003767 1.5e-26 126.3 621 28.2
THA.LOC104799199 Tarenaya hassleriana HOM05D004021 ORTHO05D003767 1.5e-26 126.3 1250 23.9
Nitab4.5_0000664g0210 Nicotiana tabacum HOM05D004021 ORTHO05D003767 5.9e-26 124.4 1245 23.1
Nitab4.5_0000664g0250 Nicotiana tabacum HOM05D004021 ORTHO05D003767 1.7e-25 122.9 1278 22.6
CARHR201690 Cardamine hirsuta HOM05D004021 ORTHO05D003767 2.2e-25 122.5 1216 23.3
Actinidia15734 Actinidia chinensis HOM05D004021 ORTHO05D003767 2.9e-25 122.1 1278 23.2
AT5G11530 Arabidopsis thaliana HOM05D004021 ORTHO05D003767 3.8e-25 121.7 1202 23.4
Cpa.g.sc7.256 Carica papaya HOM05D004021 ORTHO05D003767 6.5e-25 120.9 354 31.1
Carub.0006s1000 Capsella rubella HOM05D004021 ORTHO05D003767 8.5e-25 120.6 1221 23.8
Aa31LG3G15670 Aethionema arabicum HOM05D004021 ORTHO05D003767 1.4e-24 119.8 1220 23.3
PGSC0003DMG401018585 Solanum tuberosum HOM05D004021 ORTHO05D003767 1.9e-24 119.4 1288 23.6
Nitab4.5_0001567g0120 Nicotiana tabacum HOM05D004021 ORTHO05D003767 2.1e-23 115.9 1300 23.2
Nn3g18104 Nelumbo nucifera HOM05D004021 ORTHO05D003767 3.6e-23 115.2 1234 22.9
Nitab4.5_0001567g0150 Nicotiana tabacum HOM05D004021 ORTHO05D003767 3.6e-23 115.2 1249 21.9
vmacro05366 Vaccinium macrocarpon HOM05D004021 ORTHO05D003767 7.9e-23 114.0 1202 23.6
Peaxi162Scf00276g00210 Petunia axillaris HOM05D004021 ORTHO05D003767 3.9e-22 111.7 1261 22.4
Thhalv10003568m.g Eutrema salsugineum HOM05D004021 ORTHO05D003767 1.7e-20 106.3 1216 24.7
Solyc11g071250.3 Solanum lycopersicum HOM05D004021 ORTHO05D003767 1.1e-19 103.6 1306 23.6
Nn2g11674 Nelumbo nucifera HOM05D004021 ORTHO05D003767 1.4e-19 103.2 626 25.1
Sopen11g028940 Solanum pennellii HOM05D004021 ORTHO05D003767 5.3e-19 101.3 1306 23.5
MBI01_g30860_MAGBIO Magnolia biondii HOM05D004021 ORTHO05D003767 2.9e-17 95.5 1276 21.3
BcaNung01931 Brassica carinata HOM05D004021 ORTHO05D003767 1.9e-16 92.8 1213 22.6
BcaC03g13370 Brassica carinata HOM05D004021 ORTHO05D003767 2.5e-16 92.4 1198 21.5
C02p05090 Brassica napus HOM05D004021 ORTHO05D003767 2.5e-16 92.4 1198 21.5
FAN20G0872 Fragaria x ananassa HOM05D004021 ORTHO05D003767 4.2e-16 91.7 332 28.6
FAN20G1338 Fragaria x ananassa HOM05D004021 ORTHO05D003767 5.5e-16 91.3 332 28.9
FAN09G3084 Fragaria x ananassa HOM05D004021 ORTHO05D003767 7.2e-16 90.9 332 28.9
FAN13G2039 Fragaria x ananassa HOM05D004021 ORTHO05D003767 7.2e-16 90.9 332 28.9
BolC2t06463H Brassica oleracea HOM05D004021 ORTHO05D003767 9.4e-16 90.5 1200 21.3
SHI18661 Sapria himalayana HOM05D004021 ORTHO05D003767 9.4e-16 90.5 522 25.5
FAN02G4319 Fragaria x ananassa HOM05D004021 ORTHO05D003767 2.1e-15 89.4 336 28.3
BolC3t13094H Brassica oleracea HOM05D004021 ORTHO05D003767 3.0e-14 85.5 1211 21.3
CAN.G309.87 Capsicum annuum HOM05D004021 ORTHO05D003767 5.2e-14 84.7 1288 22.4
A02p01040 Brassica napus HOM05D004021 ORTHO05D003767 6.7e-14 84.3 1216 22.0
Lj8P589T23 Lonicera japonica HOM05D004021 ORTHO05D003767 2.0e-13 82.8 589 24.4
BraA02t05084Z Brassica rapa HOM05D004021 ORTHO05D003767 5.7e-13 81.3 1216 21.9
Aa31LG11G4580 Aethionema arabicum HOM05D004021 ORTHO05D003767 3.7e-12 78.6 1175 21.5
Dinv30474 Davidia involucrata HOM05D004021 ORTHO05D003767 1.1e-11 77.0 566 24.2
arahy.Tifrunner.gnm1.ann1.E545QA Arachis hypogaea HOM05D004021 ORTHO05D003767 1.4e-11 76.6 1223 21.7
BraA03t09842Z Brassica rapa HOM05D004021 ORTHO05D003767 2.4e-11 75.9 1208 20.8
Cpa.g.sc7.254 Carica papaya HOM05D004021 ORTHO05D003767 2.4e-11 75.9 117 39.3
DCAR_007709 Daucus carota HOM05D004021 ORTHO05D003767 5.3e-11 74.7 611 24.9
BcaNung03924 Brassica carinata HOM05D004021 ORTHO05D003767 9.1e-11 73.9 514 24.3
C07p42110 Brassica napus HOM05D004021 ORTHO05D003767 9.1e-11 73.9 514 24.3
BolC7t44742H Brassica oleracea HOM05D004021 ORTHO05D003767 9.1e-11 73.9 514 24.3
Hund03406 Selenicereus undatus HOM05D012164 ORTHO05D003767 2.0e-10 72.8 1306 22.7
C03p05810 Brassica napus HOM05D000602 ORTHO05D006896 1.3e-09 70.1 749 21.5
CSS0003638 Camellia sinensis var. sinensis HOM05D004021 ORTHO05D003767 1.3e-09 70.1 1276 20.7
A06p36400 Brassica napus HOM05D004021 ORTHO05D003767 1.7e-09 69.7 522 25.1
Atru.chr7.2138 Acer truncatum HOM05D004021 ORTHO05D003767 6.5e-09 67.8 95 45.3
TAR626G0813 Trochodendron aralioides HOM05D004021 ORTHO05D003767 1.1e-08 67.0 320 25.0
BraA06t26563Z Brassica rapa HOM05D004021 ORTHO05D003767 2.5e-08 65.9 522 24.7
Oeu031555.1 Olea europaea HOM05D004021 ORTHO05D003767 4.2e-08 65.1 1212 21.5
Oeu012193.1 Olea europaea HOM05D004021 ORTHO05D003767 9.4e-08 63.9 1222 21.4
A03p05080 Brassica napus HOM05D000602 ORTHO05D006896 1.2e-07 63.5 752 22.3
Sc09g0009160 Simmondsia chinensis HOM05D012164 ORTHO05D003767 1.6e-07 63.2 1222 22.3
vmacro18883 Vaccinium macrocarpon HOM05D004021 ORTHO05D003767 1.0e-06 60.5 1191 21.0
Migut.E01516 Erythranthe guttata HOM05D004021 ORTHO05D003767 1.4e-06 60.1 1196 21.8
SalBow1G4226 Salvia bowleyana HOM05D004021 ORTHO05D003767 1.4e-06 60.1 993 23.1
Peaxi162Scf00657g00058 Petunia axillaris HOM05D004021 ORTHO05D003767 4.0e-06 58.5 1330 21.7
Rhsim08G0224000 Rhododendron simsii HOM05D004021 ORTHO05D003767 4.0e-06 58.5 580 23.3
Atru.chr7.2139 Acer truncatum HOM05D004021 ORTHO05D003767 6.7e-06 57.8 262 28.6
BcaB01g05477 Brassica carinata HOM05D004021 ORTHO05D003767 6.7e-06 57.8 1208 21.3
Lj8A589T33 Lonicera japonica HOM05D004021 ORTHO05D003767 6.7e-06 57.8 171 28.1
BcaNung04838 Brassica carinata HOM05D004021 ORTHO05D003767 8.8e-06 57.4 244 29.9


User provided reference genes

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