Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG08G012310 Citrullus lanatus HOM05D003951 ORTHO05D005378 0.0e+00 1945.2 992 100.0
MELO3C011151.2 Cucumis melo HOM05D003951 ORTHO05D005378 0.0e+00 1836.2 992 93.9
CsaV3_2G030980 Cucumis sativus L. HOM05D003951 ORTHO05D005378 0.0e+00 1818.9 992 92.8
Sed0007642 Sechium edule HOM05D003951 ORTHO05D005378 0.0e+00 1776.1 992 90.3
Sed0024259 Sechium edule HOM05D003951 ORTHO05D005378 0.0e+00 1749.6 992 88.7
CiPaw.08G024600 Carya illinoinensis HOM05D003951 ORTHO05D005378 0.0e+00 1436.4 985 71.4
Cfa013355 Carpinus fangiana HOM05D003951 ORTHO05D005378 0.0e+00 1434.1 993 71.4
Dinv30270 Davidia involucrata HOM05D003951 ORTHO05D005378 0.0e+00 1424.8 994 69.8
GSVIVG01035648001 Vitis vinifera HOM05D003951 ORTHO05D005378 0.0e+00 1422.5 995 69.9
Hma1.2p1_0590F.1_g185010 Hydrangea macrophylla HOM05D003951 ORTHO05D005378 0.0e+00 1416.7 994 68.8
Dinv14244 Davidia involucrata HOM05D003951 ORTHO05D005378 0.0e+00 1414.8 960 71.1
Thecc.09G042400 Theobroma cacao HOM05D003951 ORTHO05D005378 0.0e+00 1412.5 995 69.2
Prupe.1G450600 Prunus persica HOM05D003951 ORTHO05D005378 0.0e+00 1403.7 984 69.5
Atru.chr7.2135 Acer truncatum HOM05D003951 ORTHO05D005378 0.0e+00 1402.5 988 69.4
CSS0015540 Camellia sinensis var. sinensis HOM05D003951 ORTHO05D005378 0.0e+00 1401.7 992 69.1
Manes.03G061800 Manihot esculenta HOM05D003951 ORTHO05D005378 0.0e+00 1401.7 987 69.3
Gohir.D06G093700 Gossypium hirsutum HOM05D003951 ORTHO05D005378 0.0e+00 1397.1 987 68.8
Gorai.010G108200 Gossypium raimondii HOM05D003951 ORTHO05D005378 0.0e+00 1396.7 985 68.8
Duzib187G0774 Durio zibethinus HOM05D003951 ORTHO05D005378 0.0e+00 1394.0 999 67.9
TAR383G0035 Trochodendron aralioides HOM05D003951 ORTHO05D005378 0.0e+00 1389.4 994 69.0
CANSAT25G2930 Cannabis sativa HOM05D003951 ORTHO05D005378 0.0e+00 1389.0 993 68.4
Glyma.06G083700 Glycine max HOM05D003951 ORTHO05D005378 0.0e+00 1382.5 994 67.7
RcHm_v2.0_Chr6g0305971 Rosa chinensis HOM05D003951 ORTHO05D005378 0.0e+00 1382.5 987 68.7
Gohir.A06G094100 Gossypium hirsutum HOM05D003951 ORTHO05D005378 0.0e+00 1380.9 987 68.1
MD08G1115900 Malus domestica HOM05D003951 ORTHO05D005378 0.0e+00 1380.2 992 68.3
Ciclev10007348m.g Citrus clementina HOM05D003951 ORTHO05D005378 0.0e+00 1379.8 989 67.9
Cpa.g.sc7.257 Carica papaya HOM05D003951 ORTHO05D005378 0.0e+00 1378.6 994 67.2
Lj1g0011830 Lotus japonicus HOM05D003951 ORTHO05D005378 0.0e+00 1378.6 992 67.9
MD15G1095600 Malus domestica HOM05D003951 ORTHO05D005378 0.0e+00 1377.5 984 68.6
Glyma.04G082000 Glycine max HOM05D003951 ORTHO05D005378 0.0e+00 1374.4 992 67.3
Lalb_Chr08g0243161 Lupinus albus HOM05D003951 ORTHO05D005378 0.0e+00 1373.2 993 66.6
Potri.018G039800 Populus trichocarpa HOM05D003951 ORTHO05D005378 0.0e+00 1372.8 992 67.2
TWI32G0786 Tripterygium wilfordii HOM05D003951 ORTHO05D005378 0.0e+00 1367.8 994 66.7
arahy.Tifrunner.gnm1.ann1.6KB6B4 Arachis hypogaea HOM05D003951 ORTHO05D005378 0.0e+00 1367.1 992 66.3
FvH4_2g35850 Fragaria vesca HOM05D003951 ORTHO05D005378 0.0e+00 1364.7 994 67.7
QL12p029450 Quercus lobata HOM05D003951 ORTHO05D005378 0.0e+00 1364.4 993 68.0
Aqoxy7G01531 Aquilegia oxysepala HOM05D003951 ORTHO05D005378 0.0e+00 1363.6 991 66.4
Nn2g11661 Nelumbo nucifera HOM05D003951 ORTHO05D005378 0.0e+00 1363.2 990 67.4
Eucgr.C02905 Eucalyptus grandis HOM05D003951 ORTHO05D005378 0.0e+00 1362.8 984 67.0
FAN15G0863 Fragaria x ananassa HOM05D003951 ORTHO05D005378 0.0e+00 1362.4 994 67.5
arahy.Tifrunner.gnm1.ann1.ZA6ZKK Arachis hypogaea HOM05D003951 ORTHO05D005378 0.0e+00 1361.3 992 66.2
VMungo1309G1090 Vigna mungo HOM05D003951 ORTHO05D005378 0.0e+00 1360.5 995 66.7
Gohir.D13G192700 Gossypium hirsutum HOM05D003951 ORTHO05D005378 0.0e+00 1360.1 992 66.4
FAN27G3265 Fragaria x ananassa HOM05D003951 ORTHO05D005378 0.0e+00 1356.3 994 67.5
Gorai.013G218700 Gossypium raimondii HOM05D003951 ORTHO05D005378 0.0e+00 1355.5 992 66.1
Ca_15606_v3 Cicer arietinum L. HOM05D003951 ORTHO05D005378 0.0e+00 1355.1 992 66.1
Gohir.D08G272000 Gossypium hirsutum HOM05D003951 ORTHO05D005378 0.0e+00 1355.1 988 67.3
Gohir.A13G186000 Gossypium hirsutum HOM05D003951 ORTHO05D005378 0.0e+00 1354.0 992 66.1
Gorai.004G290400 Gossypium raimondii HOM05D003951 ORTHO05D005378 0.0e+00 1354.0 988 67.3
Sabra18G0039700 Salix brachista HOM05D003951 ORTHO05D005378 0.0e+00 1353.2 991 66.5
FAN20G1017 Fragaria x ananassa HOM05D003951 ORTHO05D005378 0.0e+00 1352.8 994 67.3
Gohir.A08G250500 Gossypium hirsutum HOM05D003951 ORTHO05D005378 0.0e+00 1350.9 988 67.1
Lalb_Chr23g0269551 Lupinus albus HOM05D003951 ORTHO05D005378 0.0e+00 1349.7 991 66.5
Psat5g022720 Pisum sativum HOM05D003951 ORTHO05D005378 0.0e+00 1349.3 992 65.8
Potri.006G240300 Populus trichocarpa HOM05D003951 ORTHO05D005378 0.0e+00 1349.3 992 66.1
PGR044G0887 Punica granatum HOM05D003951 ORTHO05D005378 0.0e+00 1347.4 984 66.8
Phvul.009G107800 Phaseolus vulgaris HOM05D003951 ORTHO05D005378 0.0e+00 1345.5 994 65.7
Medtr3g110140 Medicago truncatula HOM05D003951 ORTHO05D005378 0.0e+00 1343.9 994 65.5
TPR.G1335 Trifolium pratense HOM05D003951 ORTHO05D005378 0.0e+00 1343.6 994 65.8
Nitab4.5_0010350g0010 Nicotiana tabacum HOM05D003951 ORTHO05D005378 0.0e+00 1340.9 987 64.8
Sabra06G0187900 Salix brachista HOM05D003951 ORTHO05D005378 0.0e+00 1334.7 1017 64.8
CANSAT56G2409 Cannabis sativa HOM05D003951 ORTHO05D005378 0.0e+00 1333.2 999 66.5
CANSAT56G0789 Cannabis sativa HOM05D003951 ORTHO05D005378 0.0e+00 1327.8 998 66.1
MBI04_g14936_MAGBIO Magnolia biondii HOM05D003951 ORTHO05D005378 0.0e+00 1324.7 996 64.9
Sc23g0005190 Simmondsia chinensis HOM05D003951 ORTHO05D005378 0.0e+00 1324.7 993 65.8
Nitab4.5_0000132g0420 Nicotiana tabacum HOM05D003951 ORTHO05D005378 0.0e+00 1322.8 987 64.8
vmacro10453 Vaccinium macrocarpon HOM05D003951 ORTHO05D005378 0.0e+00 1321.2 1006 65.5
Cc06_g04830 Coffea canephora HOM05D003951 ORTHO05D005378 0.0e+00 1320.4 994 63.6
DCAR_004489 Daucus carota HOM05D003951 ORTHO05D005378 0.0e+00 1316.6 1084 61.2
Oeu038879.1 Olea europaea HOM05D003951 ORTHO05D005378 0.0e+00 1315.4 994 64.5
MSTRG.19211 Avicennia marina HOM05D003951 ORTHO05D005378 0.0e+00 1313.5 994 64.2
PSO210G0075 Papaver somniferum HOM05D003951 ORTHO05D005378 0.0e+00 1310.8 995 65.3
Solyc09g008610.4 Solanum lycopersicum HOM05D003951 ORTHO05D005378 0.0e+00 1310.8 987 63.1
Nitab4.5_0008726g0020 Nicotiana tabacum HOM05D003951 ORTHO05D005378 0.0e+00 1309.7 987 63.8
PSO210G7231 Papaver somniferum HOM05D003951 ORTHO05D005378 0.0e+00 1309.7 995 65.2
Thhalv10012570m.g Eutrema salsugineum HOM05D003951 ORTHO05D005378 0.0e+00 1308.9 992 64.4
Hund19527 Selenicereus undatus HOM05D003951 ORTHO05D005378 0.0e+00 1307.0 994 63.9
PGSC0003DMG400012982 Solanum tuberosum HOM05D003951 ORTHO05D005378 0.0e+00 1302.7 987 63.0
Sopen09g003410 Solanum pennellii HOM05D003951 ORTHO05D005378 0.0e+00 1301.6 990 62.7
EL10Ac2g04048 Beta vulgaris HOM05D003951 ORTHO05D005378 0.0e+00 1301.2 994 64.6
BcaNung01934 Brassica carinata HOM05D003951 ORTHO05D005378 0.0e+00 1301.2 994 63.9
BcaC03g13375 Brassica carinata HOM05D003951 ORTHO05D005378 0.0e+00 1300.8 992 64.1
C02p05210 Brassica napus HOM05D003951 ORTHO05D005378 0.0e+00 1298.9 992 64.2
BcaB08g37043 Brassica carinata HOM05D003951 ORTHO05D005378 0.0e+00 1297.7 994 64.1
Sp6g32040 Schrenkiella parvula HOM05D003951 ORTHO05D005378 0.0e+00 1297.7 994 63.9
Peaxi162Scf01195g00118 Petunia axillaris HOM05D003951 ORTHO05D005378 0.0e+00 1294.6 991 62.9
THA.LOC104814774 Tarenaya hassleriana HOM05D003951 ORTHO05D005378 0.0e+00 1291.2 994 64.0
A10p26200 Brassica napus HOM05D003951 ORTHO05D005378 0.0e+00 1290.8 992 63.7
Migut.J00480 Erythranthe guttata HOM05D003951 ORTHO05D005378 0.0e+00 1288.5 992 62.8
BcaC04g19214 Brassica carinata HOM05D003951 ORTHO05D005378 0.0e+00 1287.7 993 63.6
CARHR201660 Cardamine hirsuta HOM05D003951 ORTHO05D005378 0.0e+00 1286.2 984 63.5
BolC2t06471H Brassica oleracea HOM05D003951 ORTHO05D005378 0.0e+00 1285.8 1007 63.2
C09p65250 Brassica napus HOM05D003951 ORTHO05D005378 0.0e+00 1285.0 993 63.5
COL.COLO4_18674 Corchorus olitorius HOM05D003951 ORTHO05D005378 0.0e+00 1284.6 906 69.2
SalBow3G1921 Salvia bowleyana HOM05D003951 ORTHO05D005378 0.0e+00 1284.2 993 62.9
BraA10t44677Z Brassica rapa HOM05D003951 ORTHO05D005378 0.0e+00 1278.8 1012 62.5
AL6G22230 Arabidopsis lyrata HOM05D003951 ORTHO05D005378 0.0e+00 1273.8 992 62.9
HanXRQChr08g0221151 Helianthus annuus HOM05D003951 ORTHO05D005378 0.0e+00 1273.1 994 63.0
AT5G11560 Arabidopsis thaliana HOM05D003951 ORTHO05D005378 0.0e+00 1272.3 992 62.8
Oeu017004.2 Olea europaea HOM05D003951 ORTHO05D005378 0.0e+00 1270.8 1083 59.3
CAN.G1759.1 Capsicum annuum HOM05D003951 ORTHO05D005378 0.0e+00 1269.6 958 63.6
ECA233G3193 Erigeron canadensis HOM05D003951 ORTHO05D005378 0.0e+00 1269.6 961 63.8
Carub.0006s1003 Capsella rubella HOM05D003951 ORTHO05D005378 0.0e+00 1265.4 988 62.7
BolC9t59353H Brassica oleracea HOM05D003951 ORTHO05D005378 0.0e+00 1265.0 1019 61.7
SGA_v2.0_scaffold657G53382 Striga asiatica HOM05D003951 ORTHO05D005378 0.0e+00 1254.2 998 61.4
Lsat_1_v5_gn_6_63741 Lactuca sativa HOM05D003951 ORTHO05D005378 0.0e+00 1249.6 1023 59.9
ATR0315G102 Amborella trichopoda HOM05D003951 ORTHO05D005378 0.0e+00 1237.2 988 61.2
BraA02t05087Z Brassica rapa HOM05D003951 ORTHO05D005378 0.0e+00 1236.9 1007 60.7
AUR62043518 Chenopodium quinoa HOM05D003951 ORTHO05D005378 0.0e+00 1235.3 994 61.4
AUR62041721 Chenopodium quinoa HOM05D003951 ORTHO05D005378 0.0e+00 1234.9 994 61.3
CDE09G1231 Ceratophyllum demersum HOM05D003951 ORTHO05D005378 0.0e+00 1214.9 984 60.2
AUR62009306 Chenopodium quinoa HOM05D003951 ORTHO05D005378 0.0e+00 1199.5 994 59.6
Lj8A588G18 Lonicera japonica HOM05D003951 ORTHO05D005378 0.0e+00 1192.2 974 61.3
A02p01070 Brassica napus HOM05D003951 ORTHO05D005378 0.0e+00 1182.5 992 59.2
Os05g0230600 Oryza sativa ssp. japonica HOM05D003951 ORTHO05D005378 0.0e+00 1179.5 988 57.6
Nitab4.5_0004281g0080 Nicotiana tabacum HOM05D003951 ORTHO05D005378 0.0e+00 1170.2 905 62.2
Zm00001eb350390 Zea mays HOM05D003951 ORTHO05D005378 0.0e+00 1162.9 990 57.2
Aa31LG3G15640 Aethionema arabicum HOM05D003951 ORTHO05D005378 0.0e+00 1157.1 992 59.5
Ah.16g105420 Amaranthus hybridus HOM05D003951 ORTHO05D005378 0.0e+00 1149.8 1022 58.0
Zm00001eb284300 Zea mays HOM05D003951 ORTHO05D005378 0.0e+00 1149.4 991 56.9
Medtr3g110090 Medicago truncatula HOM05D003951 ORTHO05D005378 0.0e+00 1139.8 854 64.6
Ah.10g035090 Amaranthus hybridus HOM05D003951 ORTHO05D005378 0.0e+00 1080.5 851 62.0
SHI18663 Sapria himalayana HOM05D003951 ORTHO05D005378 7.7e-306 1053.9 815 62.5
SGA_v2.0_scaffold40G15445 Striga asiatica HOM05D003951 ORTHO05D005378 6.1e-303 1044.3 887 58.3
CDE02G1137 Ceratophyllum demersum HOM05D003951 ORTHO05D005378 3.3e-301 1038.5 957 55.0
Mapoly0001s0045 Marchantia polymorpha HOM05D003951 ORTHO05D005378 6.5e-281 971.1 981 49.4
Pp3c24_6940 Physcomitrium patens HOM05D003951 ORTHO05D005378 5.5e-272 941.4 1007 47.6
Haze_16526 Corylus avellana HOM05D003951 ORTHO05D005378 2.9e-252 875.9 657 64.7
Actinidia14667 Actinidia chinensis HOM05D003951 ORTHO05D005378 4.9e-244 848.6 547 74.2
SMO361G0709 Selaginella moellendorffii HOM05D003951 ORTHO05D005378 2.3e-241 839.7 957 46.5
Ah.16g105540 Amaranthus hybridus HOM05D003951 ORTHO05D005378 9.0e-230 801.2 692 57.5
Lj7A704G78 Lonicera japonica HOM05D003951 ORTHO05D005378 2.4e-214 750.0 655 55.7
AagrBONN_evm.TU.Sc2ySwM_228.1359 Anthoceros agrestis HOM05D003951 ORTHO05D005378 6.7e-201 705.3 894 40.8
Ah.16g105530 Amaranthus hybridus HOM05D003951 ORTHO05D005378 2.8e-199 699.9 534 64.6
Actinidia15735 Actinidia chinensis HOM05D003951 ORTHO05D005378 8.5e-172 608.6 815 43.3
TAR626G1339 Trochodendron aralioides HOM05D003951 ORTHO05D005378 2.7e-162 577.0 368 75.8
HPP92_003925 Vanilla planifolia HOM05D003951 ORTHO05D005378 1.7e-143 514.6 926 36.2
Haze_16527 Corylus avellana HOM05D003951 ORTHO05D005378 3.5e-141 506.9 296 83.8
Actinidia14668 Actinidia chinensis HOM05D003951 ORTHO05D005378 1.3e-140 505.0 422 59.2
Lj7C704T11 Lonicera japonica HOM05D003951 ORTHO05D005378 4.7e-138 496.5 296 80.4
Gohir.A08G250566 Gossypium hirsutum HOM05D003951 ORTHO05D005378 1.2e-130 471.9 282 80.1
CBR_g46228 Chara braunii HOM05D000019 ORTHO05D000048 1.3e-124 451.8 861 33.9
PRCOL_00001466 Prasinoderma coloniale HOM05D003951 ORTHO05D005378 7.8e-117 426.0 1058 29.9
TAR626G0188 Trochodendron aralioides HOM05D003951 ORTHO05D005378 2.1e-109 401.4 257 74.7
TAR626G1232 Trochodendron aralioides HOM05D003951 ORTHO05D005378 6.9e-105 386.3 325 58.5
Cre01.g042550 Chlamydomonas reinhardtii HOM05D003951 ORTHO05D005378 1.6e-101 375.2 1028 30.2
vmacro07087 Vaccinium macrocarpon HOM05D003951 ORTHO05D005378 4.6e-101 373.6 670 38.7
unitig_22.g5110 Utricularia gibba HOM05D003951 ORTHO05D020105 6.9e-81 306.6 385 42.6
Hma1.2p1_1163F.1_g262790 Hydrangea macrophylla HOM05D003951 ORTHO05D005378 5.3e-73 280.4 318 45.9
MCO05G363 Micromonas commoda HOM05D003951 ORTHO05D005378 6.9e-73 280.0 434 37.1
Actinidia13321 Actinidia chinensis HOM05D003951 ORTHO05D005378 3.4e-72 277.7 257 52.5
Psat2g043440 Pisum sativum HOM05D003951 ORTHO05D005378 5.9e-72 276.9 371 41.2
Lj6g0012970 Lotus japonicus HOM05D003951 ORTHO05D006115 2.4e-57 228.4 251 48.6
Nn3g18131 Nelumbo nucifera HOM05D003951 ORTHO05D005378 1.1e-54 219.5 145 77.2
CBR_g46226 Chara braunii HOM05D003951 ORTHO05D005378 4.0e-52 211.1 184 56.5
BcaB01g05473 Brassica carinata HOM05D003951 ORTHO05D005378 9.8e-51 206.5 129 76.0
C03p05840 Brassica napus HOM05D003951 ORTHO05D005378 4.1e-49 201.1 125 76.8
Actinidia31233 Actinidia chinensis HOM05D006865 ORTHO05D009005 6.5e-47 193.7 145 63.4
BolC3t13096H Brassica oleracea HOM05D003951 ORTHO05D005378 5.2e-44 184.1 125 72.8
DCAR_004486 Daucus carota HOM05D003951 ORTHO05D035008 5.2e-44 184.1 104 79.8
Peaxi162Scf00110g00822 Petunia axillaris HOM05D003951 ORTHO05D005378 5.0e-39 167.5 201 51.2
Cfa023291 Carpinus fangiana HOM05D003951 ORTHO05D005378 2.8e-37 161.8 1040 21.3
BolC3t13097H Brassica oleracea HOM05D003951 ORTHO05D020105 1.0e-36 159.8 102 69.6
BcaB01g05472 Brassica carinata HOM05D003951 ORTHO05D020105 2.3e-36 158.7 102 69.6
C03p05850 Brassica napus HOM05D003951 ORTHO05D020105 2.3e-36 158.7 102 69.6
Hma1.2p1_1163F.1_g262780 Hydrangea macrophylla HOM05D003951 ORTHO05D033496 1.2e-29 136.3 84 79.8
CiPaw.07G205600 Carya illinoinensis HOM05D003951 ORTHO05D005378 2.2e-26 125.6 80 70.0
Peaxi162Scf00110g00821 Petunia axillaris HOM05D003951 ORTHO05D035008 5.2e-20 104.4 82 57.3
EL10Ac6g13930 Beta vulgaris HOM05D001881 ORTHO05D001856 2.2e-18 99.0 82 59.8
Dinv34398 Davidia involucrata HOM05D003951 ORTHO05D005378 2.2e-18 99.0 63 73.0
A03p05100 Brassica napus HOM05D003951 ORTHO05D033496 3.7e-18 98.2 120 50.0
BraA03t09844Z Brassica rapa HOM05D003951 ORTHO05D033496 3.7e-18 98.2 120 50.0
CiPaw.07G205500 Carya illinoinensis HOM05D003951 ORTHO05D020105 3.7e-18 98.2 75 64.0
CAN.G541.23 Capsicum annuum HOM05D004796 ORTHO05D006527 3.5e-16 91.7 52 76.9
Ah.04g155890 Amaranthus hybridus HOM05D003518 ORTHO05D031015 1.7e-15 89.4 59 67.8
SHI18664 Sapria himalayana HOM05D003951 ORTHO05D020105 1.1e-14 86.7 136 38.2
Ah.05g173020 Amaranthus hybridus HOM05D003951 ORTHO05D031015 5.6e-14 84.3 53 71.7
Nn3g18130 Nelumbo nucifera HOM05D003951 ORTHO05D020105 5.6e-14 84.3 70 60.0
TAR629G0021 Trochodendron aralioides HOM05D003951 ORTHO05D000285 7.3e-14 84.0 166 34.3
Ah.05g172920 Amaranthus hybridus HOM05D003951 ORTHO05D031015 1.6e-13 82.8 55 69.1
Peaxi162Scf00110g00823 Petunia axillaris HOM05D003951 ORTHO05D305850 2.1e-13 82.4 121 38.8
Psat6g121680 Pisum sativum HOM05D000840 ORTHO05D000670 3.1e-12 78.6 47 70.2
Ah.04g157730 Amaranthus hybridus HOM05D031501 ORTHO05D060762 1.9e-06 59.3 37 73.0


User provided reference genes

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