Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG08G011100 Citrullus lanatus HOM05D004394 ORTHO05D005208 1.8e-116 422.5 208 100.0
MELO3C011026.2 Cucumis melo HOM05D004394 ORTHO05D005208 1.8e-63 246.5 123 95.9
CsaV3_2G029680 Cucumis sativus L. HOM05D004394 ORTHO05D005208 5.2e-63 245.0 123 95.1
Sed0012623 Sechium edule HOM05D004394 ORTHO05D005208 1.7e-58 229.9 123 88.6
Lsat_1_v5_gn_2_108521 Lactuca sativa HOM05D004394 ORTHO05D005208 8.6e-58 227.6 124 87.9
MBI05_g37052_MAGBIO Magnolia biondii HOM05D004394 ORTHO05D005208 8.6e-58 227.6 124 85.5
Manes.08G094000 Manihot esculenta HOM05D004394 ORTHO05D005208 1.5e-57 226.9 123 87.0
Eucgr.D01128 Eucalyptus grandis HOM05D004394 ORTHO05D005208 1.2e-56 223.8 123 85.4
SGA_v2.0_scaffold24G10492 Striga asiatica HOM05D004394 ORTHO05D005208 1.2e-56 223.8 123 82.9
GSVIVG01032524001 Vitis vinifera HOM05D004394 ORTHO05D005208 1.2e-56 223.8 123 85.4
Sabra02G0076100 Salix brachista HOM05D004394 ORTHO05D005208 1.6e-56 223.4 123 83.7
MD08G1182900 Malus domestica HOM05D004394 ORTHO05D005208 2.1e-56 223.0 123 85.4
Potri.002G096600 Populus trichocarpa HOM05D004394 ORTHO05D005208 3.6e-56 222.2 123 82.9
Atru.chr13.1186 Acer truncatum HOM05D004394 ORTHO05D005208 4.7e-56 221.9 124 84.7
Cc10_g07190 Coffea canephora HOM05D004394 ORTHO05D005208 4.7e-56 221.9 123 84.6
Ciclev10003351m.g Citrus clementina HOM05D004394 ORTHO05D005208 6.1e-56 221.5 124 85.5
Oeu046302.1 Olea europaea HOM05D004394 ORTHO05D005208 6.1e-56 221.5 123 85.4
Prupe.1G517100 Prunus persica HOM05D004394 ORTHO05D005208 8.0e-56 221.1 123 84.6
Aqoxy6G00782 Aquilegia oxysepala HOM05D004394 ORTHO05D005208 1.0e-55 220.7 123 85.4
SalBow7G3516 Salvia bowleyana HOM05D004394 ORTHO05D005208 2.3e-55 219.5 136 74.3
Cfa013636 Carpinus fangiana HOM05D004394 ORTHO05D005208 3.1e-55 219.2 123 83.7
Dinv36547 Davidia involucrata HOM05D004394 ORTHO05D005208 4.0e-55 218.8 121 87.6
FvH4_5g37330 Fragaria vesca HOM05D004394 ORTHO05D005208 4.0e-55 218.8 123 85.4
FAN18G2812 Fragaria x ananassa HOM05D004394 ORTHO05D005208 4.0e-55 218.8 123 85.4
Nn2g12152 Nelumbo nucifera HOM05D004394 ORTHO05D005208 4.0e-55 218.8 123 82.9
Nitab4.5_0000232g0200 Nicotiana tabacum HOM05D004394 ORTHO05D005208 4.0e-55 218.8 137 75.9
Psat2g179880 Pisum sativum HOM05D004394 ORTHO05D005208 4.0e-55 218.8 124 83.9
QL12p036785 Quercus lobata HOM05D004394 ORTHO05D005208 4.0e-55 218.8 122 83.6
TAR376G0181 Trochodendron aralioides HOM05D004394 ORTHO05D005208 6.8e-55 218.0 123 82.1
SalBow7G2639 Salvia bowleyana HOM05D004394 ORTHO05D005208 8.9e-55 217.6 136 73.5
PGSC0003DMG400006413 Solanum tuberosum HOM05D004394 ORTHO05D005208 8.9e-55 217.6 123 82.9
ECA238G4620 Erigeron canadensis HOM05D004394 ORTHO05D005208 1.5e-54 216.9 124 83.1
FAN08G2022 Fragaria x ananassa HOM05D004394 ORTHO05D005208 1.5e-54 216.9 123 84.6
Oeu012929.1 Olea europaea HOM05D004394 ORTHO05D005208 1.5e-54 216.9 123 82.9
Sopen04g029330 Solanum pennellii HOM05D004394 ORTHO05D005208 1.5e-54 216.9 123 82.1
TAR628G0041 Trochodendron aralioides HOM05D004394 ORTHO05D005208 1.5e-54 216.9 124 80.6
Haze_22268 Corylus avellana HOM05D004394 ORTHO05D005208 2.0e-54 216.5 123 82.1
Medtr2g028730 Medicago truncatula HOM05D004394 ORTHO05D005208 2.0e-54 216.5 123 83.7
CSS0017732 Camellia sinensis var. sinensis HOM05D004394 ORTHO05D005208 3.4e-54 215.7 123 81.3
Migut.C01173 Erythranthe guttata HOM05D004394 ORTHO05D005208 3.4e-54 215.7 123 82.1
Nn5g30107 Nelumbo nucifera HOM05D004394 ORTHO05D005208 3.4e-54 215.7 122 81.1
TPR.G17517 Trifolium pratense HOM05D004394 ORTHO05D005208 4.4e-54 215.3 123 83.7
unitig_899.g14554 Utricularia gibba HOM05D000298 ORTHO05D000553 4.4e-54 215.3 124 78.2
CANSAT80G0901 Cannabis sativa HOM05D004394 ORTHO05D005208 5.8e-54 214.9 123 82.1
CAN.G101.27 Capsicum annuum HOM05D004394 ORTHO05D005208 5.8e-54 214.9 123 81.3
Potri.005G165000 Populus trichocarpa HOM05D004394 ORTHO05D005208 5.8e-54 214.9 123 80.5
FAN13G1242 Fragaria x ananassa HOM05D004394 ORTHO05D005208 7.5e-54 214.5 123 83.7
Peaxi162Scf00041g00179 Petunia axillaris HOM05D004394 ORTHO05D005208 7.5e-54 214.5 123 80.5
Atru.chr5.2725 Acer truncatum HOM05D004394 ORTHO05D005208 1.3e-53 213.8 124 81.5
MSTRG.25920 Avicennia marina HOM05D004394 ORTHO05D005208 1.3e-53 213.8 123 81.3
Psat1g170200 Pisum sativum HOM05D004394 ORTHO05D005208 1.3e-53 213.8 123 82.1
Ah.12g059310 Amaranthus hybridus HOM05D004394 ORTHO05D005208 1.7e-53 213.4 142 71.1
RcHm_v2.0_Chr7g0238971 Rosa chinensis HOM05D004394 ORTHO05D005208 1.7e-53 213.4 123 84.6
VMungo0720G0524 Vigna mungo HOM05D004394 ORTHO05D005208 1.7e-53 213.4 121 81.8
Ca_08121_v3 Cicer arietinum L. HOM05D004394 ORTHO05D005208 2.2e-53 213.0 123 82.1
Glyma.20G173300 Glycine max HOM05D004394 ORTHO05D005208 2.2e-53 213.0 123 81.3
QL03p027611 Quercus lobata HOM05D004394 ORTHO05D005208 2.2e-53 213.0 123 82.1
Ca_20267_v3 Cicer arietinum L. HOM05D004394 ORTHO05D005208 3.7e-53 212.2 123 81.3
Phvul.007G087400 Phaseolus vulgaris HOM05D004394 ORTHO05D005208 3.7e-53 212.2 123 80.5
AUR62036356 Chenopodium quinoa HOM05D004394 ORTHO05D005208 4.9e-53 211.8 123 77.2
TPR.G10620 Trifolium pratense HOM05D004394 ORTHO05D005208 4.9e-53 211.8 123 81.3
EL10Ac5g11858 Beta vulgaris HOM05D004394 ORTHO05D005208 6.4e-53 211.5 123 77.2
HanXRQChr07g0194691 Helianthus annuus HOM05D004394 ORTHO05D005208 6.4e-53 211.5 124 79.0
CiPaw.08G045200 Carya illinoinensis HOM05D004394 ORTHO05D005208 8.3e-53 211.1 121 81.0
CANSAT80G2869 Cannabis sativa HOM05D004394 ORTHO05D005208 1.9e-52 209.9 123 78.9
AUR62027759 Chenopodium quinoa HOM05D004394 ORTHO05D005208 1.9e-52 209.9 123 77.2
Lj2g0026973 Lotus japonicus HOM05D004394 ORTHO05D005208 1.9e-52 209.9 123 81.3
AUR62030717 Chenopodium quinoa HOM05D004394 ORTHO05D005208 3.2e-52 209.1 123 76.4
HanXRQChr04g0126451 Helianthus annuus HOM05D004394 ORTHO05D005208 3.2e-52 209.1 124 78.2
CDE02G1736 Ceratophyllum demersum HOM05D004394 ORTHO05D005208 4.1e-52 208.8 124 77.4
CDE06G0322 Ceratophyllum demersum HOM05D004394 ORTHO05D005208 5.4e-52 208.4 127 76.4
PGR042G0728 Punica granatum HOM05D004394 ORTHO05D005208 7.0e-52 208.0 123 77.2
Actinidia30773 Actinidia chinensis HOM05D004394 ORTHO05D005208 9.2e-52 207.6 122 77.9
THA.LOC104800150 Tarenaya hassleriana HOM05D004394 ORTHO05D005208 1.2e-51 207.2 125 78.4
Actinidia10324 Actinidia chinensis HOM05D004394 ORTHO05D005208 1.6e-51 206.8 123 78.0
Sp1g19780 Schrenkiella parvula HOM05D004394 ORTHO05D005208 1.6e-51 206.8 126 77.0
Glyma.10G218300 Glycine max HOM05D004394 ORTHO05D005208 2.0e-51 206.5 123 78.0
Sabra05G0124400 Salix brachista HOM05D004394 ORTHO05D005208 2.0e-51 206.5 121 76.9
BcaC06g34947 Brassica carinata HOM05D004394 ORTHO05D005208 2.7e-51 206.1 126 77.0
BolC7t42673H Brassica oleracea HOM05D004394 ORTHO05D005208 2.7e-51 206.1 126 77.0
DCAR_008736 Daucus carota HOM05D004394 ORTHO05D005208 2.7e-51 206.1 124 75.0
Lalb_Chr08g0242051 Lupinus albus HOM05D004394 ORTHO05D005208 2.7e-51 206.1 123 79.7
Lalb_Chr11g0065431 Lupinus albus HOM05D004394 ORTHO05D005208 2.7e-51 206.1 123 78.0
Cpa.g.sc53.145 Carica papaya HOM05D004394 ORTHO05D005208 4.6e-51 205.3 124 79.0
Thecc.08G106700 Theobroma cacao HOM05D004394 ORTHO05D005208 4.6e-51 205.3 125 80.0
BraA07t29204Z Brassica rapa HOM05D004394 ORTHO05D005208 7.8e-51 204.5 126 76.2
Phvul.002G138800 Phaseolus vulgaris HOM05D004394 ORTHO05D005208 7.8e-51 204.5 122 77.9
THA.LOC104809715 Tarenaya hassleriana HOM05D004394 ORTHO05D005208 1.0e-50 204.1 125 78.4
C07p21470 Brassica napus HOM05D004394 ORTHO05D005208 1.3e-50 203.8 124 76.6
Hma1.2p1_0575F.1_g181580 Hydrangea macrophylla HOM05D004394 ORTHO05D005208 1.3e-50 203.8 116 82.8
A07p14580 Brassica napus HOM05D004394 ORTHO05D005208 2.3e-50 203.0 125 75.2
Medtr1g050345 Medicago truncatula HOM05D004394 ORTHO05D005208 2.3e-50 203.0 123 78.0
ATR0782G020 Amborella trichopoda HOM05D004394 ORTHO05D005208 3.0e-50 202.6 123 77.2
Duzib041G0085 Durio zibethinus HOM05D004394 ORTHO05D005208 3.0e-50 202.6 125 79.2
MD15G1369300 Malus domestica HOM05D004394 ORTHO05D005208 3.0e-50 202.6 116 82.8
Sc01g0000460 Simmondsia chinensis HOM05D004394 ORTHO05D005208 3.0e-50 202.6 123 76.4
Gohir.D06G036200 Gossypium hirsutum HOM05D004394 ORTHO05D005208 3.9e-50 202.2 125 78.4
Gorai.010G040200 Gossypium raimondii HOM05D004394 ORTHO05D005208 3.9e-50 202.2 125 78.4
Solyc04g074150.3 Solanum lycopersicum HOM05D004394 ORTHO05D005208 3.9e-50 202.2 116 81.0
BcaB07g32248 Brassica carinata HOM05D004394 ORTHO05D005208 5.0e-50 201.8 129 72.1
TWI36G1364 Tripterygium wilfordii HOM05D004394 ORTHO05D005208 8.6e-50 201.1 124 74.2
Duzib093G0332 Durio zibethinus HOM05D004394 ORTHO05D005208 1.5e-49 200.3 125 78.4
TWI12G1259 Tripterygium wilfordii HOM05D004394 ORTHO05D005208 1.5e-49 200.3 124 77.4
CARHR022650 Cardamine hirsuta HOM05D004394 ORTHO05D005208 1.9e-49 199.9 125 75.2
Gohir.A06G035600 Gossypium hirsutum HOM05D004394 ORTHO05D005208 1.9e-49 199.9 125 77.6
Duzib093G1861 Durio zibethinus HOM05D004394 ORTHO05D005208 3.3e-49 199.1 125 77.6
Cpa.g.sc36.132 Carica papaya HOM05D004394 ORTHO05D005208 4.3e-49 198.7 124 77.4
A09p42510 Brassica napus HOM05D004394 ORTHO05D005208 5.6e-49 198.4 128 71.9
BraA09t39727Z Brassica rapa HOM05D004394 ORTHO05D005208 5.6e-49 198.4 128 71.9
AL1G35720 Arabidopsis lyrata HOM05D004394 ORTHO05D005208 1.2e-48 197.2 125 73.6
Carub.0001s2182 Capsella rubella HOM05D004394 ORTHO05D005208 1.6e-48 196.8 125 72.8
AT1G22270 Arabidopsis thaliana HOM05D004394 ORTHO05D005208 2.1e-48 196.4 125 73.6
PSO781G0205 Papaver somniferum HOM05D004394 ORTHO05D005208 2.1e-48 196.4 123 74.0
BcaC05g26154 Brassica carinata HOM05D004394 ORTHO05D005208 6.2e-48 194.9 127 70.1
C05p21390 Brassica napus HOM05D004394 ORTHO05D005208 6.2e-48 194.9 127 70.1
PSO541G5821 Papaver somniferum HOM05D004394 ORTHO05D005208 8.0e-48 194.5 123 73.2
Thhalv10019322m.g Eutrema salsugineum HOM05D004394 ORTHO05D005208 1.1e-47 194.1 125 71.2
Gohir.A05G267200 Gossypium hirsutum HOM05D004394 ORTHO05D005208 2.3e-47 193.0 125 76.0
BolC5t30836H Brassica oleracea HOM05D004394 ORTHO05D005208 4.0e-47 192.2 127 69.3
CARHR071660 Cardamine hirsuta HOM05D004394 ORTHO05D005208 6.8e-47 191.4 125 70.4
Thhalv10009116m.g Eutrema salsugineum HOM05D004394 ORTHO05D005208 8.9e-47 191.0 126 70.6
Gorai.009G281400 Gossypium raimondii HOM05D004394 ORTHO05D005208 1.2e-46 190.7 125 75.2
Aa31LG7G6210 Aethionema arabicum HOM05D004394 ORTHO05D005208 1.5e-46 190.3 125 73.6
Gohir.D05G268800 Gossypium hirsutum HOM05D004394 ORTHO05D005208 3.4e-46 189.1 125 74.4
Sp5g33330 Schrenkiella parvula HOM05D004394 ORTHO05D005208 3.4e-46 189.1 125 70.4
Mapoly0008s0078 Marchantia polymorpha HOM05D004394 ORTHO05D005208 4.4e-46 188.7 123 68.3
SHI20485 Sapria himalayana HOM05D004394 ORTHO05D005208 4.4e-46 188.7 134 66.4
Rhsim06G0082000 Rhododendron simsii HOM05D004394 ORTHO05D005208 5.8e-46 188.3 121 74.4
EL10Ac1g01214 Beta vulgaris HOM05D004394 ORTHO05D005208 7.5e-46 188.0 116 74.1
Carub.0002s2509 Capsella rubella HOM05D004394 ORTHO05D005208 2.9e-45 186.0 123 68.3
SEGI_05614 Sequoiadendron giganteum HOM05D004394 ORTHO05D005208 2.9e-45 186.0 123 70.7
BcaB03g15991 Brassica carinata HOM05D004394 ORTHO05D005208 4.9e-45 185.3 125 68.0
AL2G38520 Arabidopsis lyrata HOM05D004394 ORTHO05D005208 6.4e-45 184.9 125 70.4
COL.COLO4_16398 Corchorus olitorius HOM05D004394 ORTHO05D005208 6.4e-45 184.9 118 75.4
BcaC08g47394 Brassica carinata HOM05D004394 ORTHO05D005208 8.3e-45 184.5 123 69.9
C06p52130 Brassica napus HOM05D003496 ORTHO05D003909 8.3e-45 184.5 121 70.2
BolC6t40236H Brassica oleracea HOM05D003496 ORTHO05D003909 8.3e-45 184.5 121 70.2
AT1G78190 Arabidopsis thaliana HOM05D004394 ORTHO05D005208 1.1e-44 184.1 125 70.4
CANSAT35G1737 Cannabis sativa HOM05D004394 ORTHO05D005208 5.4e-44 181.8 115 73.9
SMO356G0508 Selaginella moellendorffii HOM05D004394 ORTHO05D005208 5.4e-44 181.8 123 69.1
Nitab4.5_0005777g0070 Nicotiana tabacum HOM05D004394 ORTHO05D005208 9.2e-44 181.0 114 75.4
CANSAT80G2909 Cannabis sativa HOM05D004394 ORTHO05D005208 1.2e-43 180.6 118 71.2
Haze_00323 Corylus avellana HOM05D004394 ORTHO05D005208 1.6e-43 180.3 134 66.4
BcaB03g14221 Brassica carinata HOM05D004394 ORTHO05D005208 2.7e-43 179.5 113 74.3
BraA07t31861Z Brassica rapa HOM05D003496 ORTHO05D003909 2.7e-43 179.5 121 67.8
A07p43490 Brassica napus HOM05D003496 ORTHO05D003909 6.0e-43 178.3 122 67.2
Nn4g22250 Nelumbo nucifera HOM05D004394 ORTHO05D005208 3.3e-41 172.6 109 71.6
Nn6g33602 Nelumbo nucifera HOM05D004394 ORTHO05D005208 4.3e-41 172.2 116 69.8
CBR_g44926 Chara braunii HOM05D004394 ORTHO05D005208 1.2e-40 170.6 123 61.0
Cpa.g.sc247.5 Carica papaya HOM05D004394 ORTHO05D005208 2.8e-40 169.5 122 68.0
Pp3c10_8220 Physcomitrium patens HOM05D004394 ORTHO05D005208 4.0e-39 165.6 123 60.2
Cre12.g512550 Chlamydomonas reinhardtii HOM05D004394 ORTHO05D005208 1.7e-37 160.2 122 61.5
AUR62038524 Chenopodium quinoa HOM05D004394 ORTHO05D005208 2.1e-35 153.3 87 75.9
AagrBONN_evm.TU.Sc2ySwM_344.4664 Anthoceros agrestis HOM05D004394 ORTHO05D005208 2.1e-32 143.3 123 54.5
CiPaw.07G180000 Carya illinoinensis HOM05D004394 ORTHO05D005208 2.8e-32 142.9 106 66.0
Os07g0623000 Oryza sativa ssp. japonica HOM05D004394 ORTHO05D005208 1.1e-31 141.0 131 51.1
Zm00001eb109660 Zea mays HOM05D004394 ORTHO05D005208 4.0e-31 139.0 132 49.2
Cpa.g.sc257.3 Carica papaya HOM05D004394 ORTHO05D005208 2.4e-28 129.8 123 55.3
MCO01G362 Micromonas commoda HOM05D004394 ORTHO05D005208 7.1e-28 128.3 122 50.0
Nn8g39569 Nelumbo nucifera HOM05D004394 ORTHO05D005208 3.0e-26 122.9 106 58.5
PRCOL_00005343 Prasinoderma coloniale HOM05D004394 ORTHO05D005208 7.3e-25 118.2 132 43.9
Cfa016137 Carpinus fangiana HOM05D004394 ORTHO05D005208 1.6e-24 117.1 115 52.2
Haze_27710 Corylus avellana HOM05D004394 ORTHO05D005208 3.6e-24 115.9 122 49.2
QL05p087667 Quercus lobata HOM05D004394 ORTHO05D000126 1.7e-21 107.1 68 70.6
SEGI_26774 Sequoiadendron giganteum HOM05D004394 ORTHO05D005208 3.2e-20 102.8 63 71.4
Lsat_1_v5_gn_4_16040 Lactuca sativa HOM05D004394 ORTHO05D005208 5.4e-20 102.1 123 46.3
Nn1g03585 Nelumbo nucifera HOM05D004394 ORTHO05D005208 5.6e-17 92.0 57 70.2
HanXRQChr03g0069311 Helianthus annuus HOM05D004394 ORTHO05D005208 1.5e-09 67.4 39 66.7


User provided reference genes

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