Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG08G011020 Citrullus lanatus HOM05D007232 ORTHO05D000652 1.5e-109 399.8 241 100.0
CsaV3_1G022890 Cucumis sativus L. HOM05D007232 ORTHO05D000652 3.3e-85 318.9 241 81.7
MELO3C011361.2 Cucumis melo HOM05D007232 ORTHO05D000652 6.2e-84 314.7 241 78.0
Sed0015627 Sechium edule HOM05D007232 ORTHO05D000652 7.3e-77 291.2 241 75.1
Sed0016694 Sechium edule HOM05D007232 ORTHO05D000652 1.3e-73 280.4 243 62.1
MD15G1326600 Malus domestica HOM05D007232 ORTHO05D000652 2.7e-31 139.8 234 36.8
Lalb_Chr11g0065501 Lupinus albus HOM05D000973 ORTHO05D000652 2.4e-27 126.7 238 36.6
Lalb_Chr08g0241951 Lupinus albus HOM05D000973 ORTHO05D000652 3.1e-27 126.3 237 39.7
MD01G1027300 Malus domestica HOM05D007232 ORTHO05D000652 3.1e-27 126.3 230 34.3
Potri.005G166600 Populus trichocarpa HOM05D000973 ORTHO05D000652 4.1e-27 125.9 244 34.0
Lalb_Chr23g0270631 Lupinus albus HOM05D000973 ORTHO05D000652 5.3e-27 125.6 225 35.6
Prupe.6G182500 Prunus persica HOM05D007232 ORTHO05D000652 1.2e-26 124.4 237 34.6
Haze_22246 Corylus avellana HOM05D000973 ORTHO05D000652 1.5e-26 124.0 237 37.1
CiPaw.07G181500 Carya illinoinensis HOM05D000973 ORTHO05D000652 2.6e-26 123.2 264 33.3
RcHm_v2.0_Chr7g0239521 Rosa chinensis HOM05D000973 ORTHO05D000652 3.4e-26 122.9 229 35.8
Cfa013620 Carpinus fangiana HOM05D000973 ORTHO05D000652 5.9e-26 122.1 249 37.3
CSS0050475 Camellia sinensis var. sinensis HOM05D007232 ORTHO05D000652 1.7e-25 120.6 223 34.5
FAN08G1947 Fragaria x ananassa HOM05D000973 ORTHO05D000652 2.2e-25 120.2 225 34.7
Ca_15240_v3 Cicer arietinum L. HOM05D000973 ORTHO05D000652 2.9e-25 119.8 228 33.8
TWI36G0485 Tripterygium wilfordii HOM05D000973 ORTHO05D000652 2.9e-25 119.8 225 42.2
TAR628G1220 Trochodendron aralioides HOM05D000973 ORTHO05D000652 2.9e-25 119.8 241 34.4
Glyma.04G103700 Glycine max HOM05D000973 ORTHO05D000652 5.0e-25 119.0 240 37.9
FAN13G2686 Fragaria x ananassa HOM05D000973 ORTHO05D000652 6.5e-25 118.6 225 34.2
QL12p036377 Quercus lobata HOM05D007232 ORTHO05D000652 6.5e-25 118.6 228 42.5
Eucgr.F02438 Eucalyptus grandis HOM05D000973 ORTHO05D000652 1.1e-24 117.9 242 40.5
FvH4_5g37770 Fragaria vesca HOM05D000973 ORTHO05D000652 1.1e-24 117.9 225 34.2
FAN18G1204 Fragaria x ananassa HOM05D000973 ORTHO05D000652 1.1e-24 117.9 225 34.2
Prupe.1G513900 Prunus persica HOM05D000973 ORTHO05D000652 4.2e-24 115.9 250 33.2
FAN04G1532 Fragaria x ananassa HOM05D000973 ORTHO05D000652 1.6e-23 114.0 225 33.3
Sabra07G0074600 Salix brachista HOM05D007232 ORTHO05D000652 2.1e-23 113.6 248 33.9
TWI56G1376 Tripterygium wilfordii HOM05D000973 ORTHO05D000652 4.7e-23 112.5 225 34.7
Eucgr.F00299 Eucalyptus grandis HOM05D000973 ORTHO05D000652 7.9e-23 111.7 246 38.2
PGR042G3281 Punica granatum HOM05D000973 ORTHO05D000652 1.0e-22 111.3 243 31.3
TAR381G1313 Trochodendron aralioides HOM05D000973 ORTHO05D000652 1.0e-22 111.3 235 33.6
Psat5g137520 Pisum sativum HOM05D000973 ORTHO05D000652 1.4e-22 110.9 243 29.6
Sabra05G0063500 Salix brachista HOM05D007232 ORTHO05D000652 1.4e-22 110.9 230 31.7
Lj1g0016679 Lotus japonicus HOM05D000973 ORTHO05D000652 3.9e-22 109.4 240 37.5
Potri.005G077100 Populus trichocarpa HOM05D007232 ORTHO05D000652 5.2e-22 109.0 233 32.2
Cfa002682 Carpinus fangiana HOM05D000973 ORTHO05D000652 8.8e-22 108.2 248 32.7
Ciclev10027435m.g Citrus clementina HOM05D007232 ORTHO05D000652 8.8e-22 108.2 219 30.6
CiPaw.04G098100 Carya illinoinensis HOM05D000973 ORTHO05D000652 1.5e-21 107.5 235 33.2
Rhsim10G0159300 Rhododendron simsii HOM05D007232 ORTHO05D000652 1.5e-21 107.5 223 31.4
Glyma.06G104900 Glycine max HOM05D000973 ORTHO05D000652 2.6e-21 106.7 258 32.9
QL06p049910 Quercus lobata HOM05D000973 ORTHO05D000652 1.1e-19 101.3 227 33.5
VMungo1309G1651 Vigna mungo HOM05D000609 ORTHO05D000462 3.1e-19 99.8 226 35.4
Lsat_1_v5_gn_9_43820 Lactuca sativa HOM05D007232 ORTHO05D000652 7.0e-19 98.6 240 33.3
PGR044G0913 Punica granatum HOM05D007232 ORTHO05D000652 7.0e-19 98.6 252 31.0
PSO781G0167 Papaver somniferum HOM05D000973 ORTHO05D000652 1.2e-18 97.8 225 28.4
AUR62019200 Chenopodium quinoa HOM05D007232 ORTHO05D000652 1.6e-18 97.4 229 31.4
Actinidia36596 Actinidia chinensis HOM05D007232 ORTHO05D000652 4.5e-18 95.9 212 31.1
EL10Ac4g10347 Beta vulgaris HOM05D007232 ORTHO05D000652 1.3e-17 94.4 232 30.2
Gorai.003G038400 Gossypium raimondii HOM05D007232 ORTHO05D000652 2.2e-17 93.6 237 32.1
Manes.18G068700 Manihot esculenta HOM05D000973 ORTHO05D000652 2.2e-17 93.6 244 25.8
PGSC0003DMG400008558 Solanum tuberosum HOM05D007232 ORTHO05D000652 2.2e-17 93.6 240 36.2
Thecc.01G104000 Theobroma cacao HOM05D007232 ORTHO05D000652 2.2e-17 93.6 234 32.5
Ca_17729_v3 Cicer arietinum L. HOM05D000973 ORTHO05D000652 3.8e-17 92.8 239 30.5
Gohir.D03G036600 Gossypium hirsutum HOM05D007232 ORTHO05D000652 3.8e-17 92.8 237 30.8
TPR.G2188 Trifolium pratense HOM05D007232 ORTHO05D000652 3.8e-17 92.8 242 37.6
MBI02_g42091_MAGBIO Magnolia biondii HOM05D000973 ORTHO05D000652 8.5e-17 91.7 260 27.7
Hma1.2p1_0237F.1_g099320 Hydrangea macrophylla HOM05D000973 ORTHO05D000652 1.1e-16 91.3 240 28.3
Hma1.2p1_1783F.1_g302128 Hydrangea macrophylla HOM05D000973 ORTHO05D000652 1.1e-16 91.3 240 28.3
Lalb_Chr12g0203771 Lupinus albus HOM05D007232 ORTHO05D000652 1.1e-16 91.3 237 35.9
RcHm_v2.0_Chr2g0115011 Rosa chinensis HOM05D000973 ORTHO05D000652 1.1e-16 91.3 237 30.0
Phvul.009G029700 Phaseolus vulgaris HOM05D000973 ORTHO05D000652 1.5e-16 90.9 219 36.1
Duzib147G1351 Durio zibethinus HOM05D007232 ORTHO05D000652 1.9e-16 90.5 238 31.9
AUR62000030 Chenopodium quinoa HOM05D007232 ORTHO05D000652 2.5e-16 90.1 236 30.5
Duzib264G0914 Durio zibethinus HOM05D007232 ORTHO05D000652 2.5e-16 90.1 236 31.8
Cpa.g.sc36.113 Carica papaya HOM05D000973 ORTHO05D000652 3.2e-16 89.7 226 28.3
Glyma.08G136900 Glycine max HOM05D000973 ORTHO05D000652 4.2e-16 89.4 252 32.1
Manes.12G136600 Manihot esculenta HOM05D007232 ORTHO05D000652 4.2e-16 89.4 245 30.6
Glyma.05G179200 Glycine max HOM05D000973 ORTHO05D000652 5.5e-16 89.0 236 31.4
Gohir.A02G144000 Gossypium hirsutum HOM05D007232 ORTHO05D000652 1.2e-15 87.8 237 30.4
Lalb_Chr13g0296021 Lupinus albus HOM05D007232 ORTHO05D000652 1.6e-15 87.4 240 30.4
MD15G1366200 Malus domestica HOM05D007232 ORTHO05D000652 3.6e-15 86.3 234 28.6
Aqoxy4G02373 Aquilegia oxysepala HOM05D000973 ORTHO05D000652 4.7e-15 85.9 224 27.2
Haze_24953 Corylus avellana HOM05D000973 ORTHO05D000652 1.0e-14 84.7 211 31.3
Hma1.2p1_0308F.1_g120090 Hydrangea macrophylla HOM05D007232 ORTHO05D000652 1.8e-14 84.0 219 30.1
Nn1g05316 Nelumbo nucifera HOM05D000973 ORTHO05D000652 1.8e-14 84.0 259 30.9
Nn1g05317 Nelumbo nucifera HOM05D000973 ORTHO05D000652 1.8e-14 84.0 259 30.9
Psat7g055040 Pisum sativum HOM05D007232 ORTHO05D000652 1.8e-14 84.0 241 31.5
Medtr8g090320 Medicago truncatula HOM05D007232 ORTHO05D000652 2.3e-14 83.6 233 32.2
Oeu056593.1 Olea europaea HOM05D007232 ORTHO05D000652 4.0e-14 82.8 243 28.0
Migut.H02369 Erythranthe guttata HOM05D007232 ORTHO05D000652 8.8e-14 81.6 245 29.4
FvH4_1g21180 Fragaria vesca HOM05D007232 ORTHO05D000652 1.5e-13 80.9 222 36.0
FAN19G3039 Fragaria x ananassa HOM05D007232 ORTHO05D000652 2.0e-13 80.5 222 35.6
Solyc04g054960.1 Solanum lycopersicum HOM05D007232 ORTHO05D000652 2.0e-13 80.5 225 28.4
Gohir.D12G096300 Gossypium hirsutum HOM05D007232 ORTHO05D000652 4.4e-13 79.3 232 26.7
Gorai.008G104500 Gossypium raimondii HOM05D007232 ORTHO05D000652 4.4e-13 79.3 232 26.7
Peaxi162Scf01263g00012 Petunia axillaris HOM05D007232 ORTHO05D000652 4.4e-13 79.3 236 28.8
Medtr3g074150 Medicago truncatula HOM05D000973 ORTHO05D000652 7.5e-13 78.6 246 32.9
Peaxi162Scf00295g00092 Petunia axillaris HOM05D007232 ORTHO05D000652 7.5e-13 78.6 236 26.7
Sopen04g024800 Solanum pennellii HOM05D007232 ORTHO05D000652 7.5e-13 78.6 229 27.9
Sp4g01240 Schrenkiella parvula HOM05D007232 ORTHO05D000652 1.3e-12 77.8 243 31.3
PGSC0003DMG400020617 Solanum tuberosum HOM05D007232 ORTHO05D000652 1.3e-12 77.8 229 27.5
arahy.Tifrunner.gnm1.ann1.VXW06X Arachis hypogaea HOM05D000973 ORTHO05D000652 2.2e-12 77.0 264 27.3
CAN.G725.2 Capsicum annuum HOM05D007232 ORTHO05D000652 3.7e-12 76.3 230 26.5
FAN28G0479 Fragaria x ananassa HOM05D007232 ORTHO05D000652 3.7e-12 76.3 219 35.6
Atru.chr4.115 Acer truncatum HOM05D007232 ORTHO05D000652 6.3e-12 75.5 222 29.7
FAN23G0488 Fragaria x ananassa HOM05D007232 ORTHO05D000652 6.3e-12 75.5 219 35.6
PSO541G5618 Papaver somniferum HOM05D000973 ORTHO05D000652 6.3e-12 75.5 207 26.6
CAN.G383.12 Capsicum annuum HOM05D007232 ORTHO05D000652 8.2e-12 75.1 232 25.9
Nitab4.5_0000104g0220 Nicotiana tabacum HOM05D007232 ORTHO05D000652 8.2e-12 75.1 236 27.1
CARHR113340 Cardamine hirsuta HOM05D007232 ORTHO05D000652 1.1e-11 74.7 234 29.1
THA.LOC104807704 Tarenaya hassleriana HOM05D007232 ORTHO05D000652 1.1e-11 74.7 233 29.2
Ah.06g193060 Amaranthus hybridus HOM05D007232 ORTHO05D000652 2.4e-11 73.6 194 30.9
ATR0564G206 Amborella trichopoda HOM05D000973 ORTHO05D000652 5.3e-11 72.4 225 35.6
BolC4t26712H Brassica oleracea HOM05D007232 ORTHO05D000652 7.0e-11 72.0 241 29.0
Lalb_Chr11g0075311 Lupinus albus HOM05D007232 ORTHO05D000652 1.6e-10 70.9 223 28.7
VMungo0251G1798 Vigna mungo HOM05D007232 ORTHO05D000652 1.6e-10 70.9 237 30.0
BcaC02g08732 Brassica carinata HOM05D007232 ORTHO05D000652 2.0e-10 70.5 241 29.0
C04p51230 Brassica napus HOM05D007232 ORTHO05D000652 2.0e-10 70.5 241 29.0
BcaB08g35048 Brassica carinata HOM05D007232 ORTHO05D000652 2.7e-10 70.1 233 29.6
COL.COLO4_09942 Corchorus olitorius HOM05D007232 ORTHO05D000652 2.7e-10 70.1 228 33.8
BcaC07g41090 Brassica carinata HOM05D007232 ORTHO05D000652 3.5e-10 69.7 234 31.2
C08p40920 Brassica napus HOM05D007232 ORTHO05D000652 3.5e-10 69.7 234 31.2
CARHR246970 Cardamine hirsuta HOM05D007232 ORTHO05D000652 3.5e-10 69.7 232 29.3
Thhalv10000276m.g Eutrema salsugineum HOM05D007232 ORTHO05D000652 3.5e-10 69.7 241 28.2
Aa31LG7G14550 Aethionema arabicum HOM05D007232 ORTHO05D000652 4.5e-10 69.3 232 27.2
AL7G11950 Arabidopsis lyrata HOM05D000249 ORTHO05D000206 1.0e-09 68.2 234 29.5
AL4G11660 Arabidopsis lyrata HOM05D007232 ORTHO05D000652 1.3e-09 67.8 240 33.3
BcaC02g08684 Brassica carinata HOM05D007232 ORTHO05D000652 1.3e-09 67.8 240 33.8
Carub.0004s0134 Capsella rubella HOM05D007232 ORTHO05D000652 1.3e-09 67.8 241 27.8
AT2G22180 Arabidopsis thaliana HOM05D007232 ORTHO05D000652 1.7e-09 67.4 241 28.6
Nitab4.5_0002378g0010 Nicotiana tabacum HOM05D007232 ORTHO05D000652 1.7e-09 67.4 224 26.8
Cpa.g.c29749 Carica papaya HOM05D007232 ORTHO05D000652 2.2e-09 67.0 241 27.4
Dinv16299 Davidia involucrata HOM05D007232 ORTHO05D000652 2.2e-09 67.0 154 32.5
Sp7g36140 Schrenkiella parvula HOM05D007232 ORTHO05D000652 2.9e-09 66.6 234 30.3
TWI74G0906 Tripterygium wilfordii HOM05D007232 ORTHO05D000652 2.9e-09 66.6 188 29.3
TAR376G0669 Trochodendron aralioides HOM05D000973 ORTHO05D000652 2.9e-09 66.6 41 75.6
Actinidia10311 Actinidia chinensis HOM05D000973 ORTHO05D000652 3.8e-09 66.2 199 28.6
BolC8t51657H Brassica oleracea HOM05D007232 ORTHO05D000652 3.8e-09 66.2 232 30.6
Phvul.002G255000 Phaseolus vulgaris HOM05D000973 ORTHO05D000652 3.8e-09 66.2 236 28.0
MD08G1180500 Malus domestica HOM05D007232 ORTHO05D000652 5.0e-09 65.9 186 27.4
THA.LOC104804156 Tarenaya hassleriana HOM05D007232 ORTHO05D000652 6.5e-09 65.5 239 26.8
A04p16690 Brassica napus HOM05D007232 ORTHO05D000652 8.5e-09 65.1 241 34.0
BraA04t17302Z Brassica rapa HOM05D007232 ORTHO05D000652 8.5e-09 65.1 241 34.0
PGSC0003DMG400021819 Solanum tuberosum HOM05D007232 ORTHO05D000652 8.5e-09 65.1 229 24.9
Solyc05g051890.1 Solanum lycopersicum HOM05D007232 ORTHO05D000652 1.1e-08 64.7 237 24.9
A09p57710 Brassica napus HOM05D007232 ORTHO05D000652 1.5e-08 64.3 219 29.2
BraA09t41164Z Brassica rapa HOM05D007232 ORTHO05D000652 1.5e-08 64.3 219 29.2
COL.COLO4_16431 Corchorus olitorius HOM05D007232 ORTHO05D000652 1.9e-08 63.9 35 74.3
MSTRG.23335 Avicennia marina HOM05D007232 ORTHO05D000652 7.2e-08 62.0 229 30.6
HPP92_016345 Vanilla planifolia HOM05D007232 ORTHO05D000652 7.2e-08 62.0 246 24.8
Sc03g0002150 Simmondsia chinensis HOM05D007232 ORTHO05D000652 1.2e-07 61.2 218 22.9
Sopen05g030420 Solanum pennellii HOM05D007232 ORTHO05D000652 2.1e-07 60.5 237 24.1
Lj4g0021275 Lotus japonicus HOM05D007232 ORTHO05D000652 4.7e-07 59.3 252 26.2
TAR544G0003 Trochodendron aralioides HOM05D000973 ORTHO05D000652 4.7e-07 59.3 238 27.3
Thecc.08G109400 Theobroma cacao HOM05D000973 ORTHO05D000652 6.1e-07 58.9 32 75.0
PSO447G0191 Papaver somniferum HOM05D000973 ORTHO05D000652 8.0e-07 58.5 247 23.9
Manes.11G112400 Manihot esculenta HOM05D000973 ORTHO05D000652 1.0e-06 58.2 244 26.6
Sed0026403 Sechium edule HOM05D000234 ORTHO05D001258 1.4e-06 57.8 235 25.5
TAR636G1424 Trochodendron aralioides HOM05D000973 ORTHO05D000652 1.4e-06 57.8 241 28.2
Cpa.g.sc103.62 Carica papaya HOM05D000973 ORTHO05D000652 1.8e-06 57.4 38 60.5
Manes.04G052400 Manihot esculenta HOM05D000973 ORTHO05D000652 1.8e-06 57.4 243 25.1
Potri.004G197600 Populus trichocarpa HOM05D000973 ORTHO05D000652 2.3e-06 57.0 160 31.9
TAR633G1053 Trochodendron aralioides HOM05D000973 ORTHO05D000652 2.3e-06 57.0 238 26.9
Nitab4.5_0004699g0040 Nicotiana tabacum HOM05D000973 ORTHO05D000652 3.0e-06 56.6 250 30.0
Migut.N02910 Erythranthe guttata HOM05D000161 ORTHO05D000111 5.2e-06 55.8 36 63.9
ClCG02G024220 Citrullus lanatus HOM05D000234 ORTHO05D001258 6.8e-06 55.5 237 24.5
Nitab4.5_0003585g0030 Nicotiana tabacum HOM05D000973 ORTHO05D000652 6.8e-06 55.5 241 30.3
Zm00001eb006970 Zea mays HOM05D007232 ORTHO05D000652 8.8e-06 55.1 232 24.1


User provided reference genes

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