Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG08G010830 Citrullus lanatus HOM05D007007 ORTHO05D008335 8.4e-152 540.4 292 100.0
ClCG08G002650 Citrullus lanatus HOM05D007007 ORTHO05D008335 7.9e-134 480.7 304 89.5
CsaV3_6G035710 Cucumis sativus L. HOM05D007007 ORTHO05D008335 9.7e-124 447.2 292 83.6
MELO3C011379.2 Cucumis melo HOM05D007007 ORTHO05D008335 1.8e-122 443.0 294 83.7
Sed0027281 Sechium edule HOM05D007007 ORTHO05D008335 4.6e-118 428.3 298 79.2
Gohir.A01G187200 Gossypium hirsutum HOM05D007007 ORTHO05D008335 2.3e-101 372.9 294 71.1
Gorai.002G219900 Gossypium raimondii HOM05D007007 ORTHO05D008335 3.0e-101 372.5 294 71.4
Gohir.D01G182500 Gossypium hirsutum HOM05D007007 ORTHO05D008335 8.8e-101 370.9 294 71.1
Thecc.08G115100 Theobroma cacao HOM05D007007 ORTHO05D008335 7.5e-100 367.9 298 69.8
Cpa.g.sc49.113 Carica papaya HOM05D007007 ORTHO05D008335 4.8e-99 365.2 290 66.9
GSVIVG01008959001 Vitis vinifera HOM05D007007 ORTHO05D008335 2.4e-98 362.8 294 67.3
CSS0021349 Camellia sinensis var. sinensis HOM05D007007 ORTHO05D008335 7.7e-97 357.8 299 65.9
Prupe.1G508000 Prunus persica HOM05D007007 ORTHO05D008335 6.5e-96 354.8 300 64.7
CiPaw.06G023600 Carya illinoinensis HOM05D007007 ORTHO05D008335 2.5e-95 352.8 292 68.5
MD08G1174100 Malus domestica HOM05D007007 ORTHO05D008335 3.2e-95 352.4 293 65.2
FAN18G4539 Fragaria x ananassa HOM05D000382 ORTHO05D008335 4.2e-95 352.1 303 65.0
RcHm_v2.0_Chr7g0240411 Rosa chinensis HOM05D007007 ORTHO05D008335 9.4e-95 350.9 294 64.6
FAN04G0256 Fragaria x ananassa HOM05D007007 ORTHO05D008335 1.2e-94 350.5 297 65.3
Duzib041G0122 Durio zibethinus HOM05D007007 ORTHO05D008335 1.6e-94 350.1 294 69.0
Ciclev10002163m.g Citrus clementina HOM05D007007 ORTHO05D008335 6.1e-94 348.2 291 63.9
FvH4_5g38391 Fragaria vesca HOM05D007007 ORTHO05D008335 6.1e-94 348.2 303 64.4
PGR042G1361 Punica granatum HOM05D007007 ORTHO05D008335 6.1e-94 348.2 299 68.9
Lj1g0002230 Lotus japonicus HOM05D007007 ORTHO05D008335 1.4e-93 347.1 293 65.9
MD15G1360500 Malus domestica HOM05D007007 ORTHO05D008335 5.2e-93 345.1 292 66.8
TAR381G0384 Trochodendron aralioides HOM05D007007 ORTHO05D008335 1.2e-92 344.0 293 65.5
Nn1g05208 Nelumbo nucifera HOM05D007007 ORTHO05D008335 5.7e-92 341.7 292 64.7
Aqoxy6G00506 Aquilegia oxysepala HOM05D007007 ORTHO05D008335 1.3e-91 340.5 301 64.8
Dinv13068 Davidia involucrata HOM05D007007 ORTHO05D008335 1.7e-91 340.1 294 66.7
Potri.002G090600 Populus trichocarpa HOM05D007007 ORTHO05D008335 1.7e-91 340.1 297 64.3
TWI12G0615 Tripterygium wilfordii HOM05D007007 ORTHO05D008335 1.7e-91 340.1 289 67.1
TWI36G1549 Tripterygium wilfordii HOM05D007007 ORTHO05D008335 4.8e-91 338.6 289 67.5
THA.LOC104800169 Tarenaya hassleriana HOM05D007007 ORTHO05D008335 6.3e-91 338.2 291 63.9
VMungo1309G1520 Vigna mungo HOM05D007007 ORTHO05D008335 1.8e-90 336.7 289 66.4
Carub.0002s2481 Capsella rubella HOM05D007007 ORTHO05D008335 2.4e-90 336.3 294 67.0
Phvul.009G026800 Phaseolus vulgaris HOM05D007007 ORTHO05D008335 2.4e-90 336.3 289 65.1
Ca_25771_v3 Cicer arietinum L. HOM05D007007 ORTHO05D008335 3.1e-90 335.9 294 63.3
FAN13G0083 Fragaria x ananassa HOM05D000382 ORTHO05D008335 4.1e-90 335.5 303 64.7
Eucgr.F03733 Eucalyptus grandis HOM05D007007 ORTHO05D008335 5.4e-90 335.1 295 67.5
Lalb_Chr08g0241781 Lupinus albus HOM05D007007 ORTHO05D008335 5.4e-90 335.1 293 62.8
Thhalv10018996m.g Eutrema salsugineum HOM05D007007 ORTHO05D008335 1.2e-89 334.0 292 64.7
Sp5g33080 Schrenkiella parvula HOM05D007007 ORTHO05D008335 4.5e-89 332.0 292 63.0
arahy.Tifrunner.gnm1.ann1.PLAH4H Arachis hypogaea HOM05D007007 ORTHO05D008335 5.9e-89 331.6 302 60.9
Lj4A109T45 Lonicera japonica HOM05D007007 ORTHO05D008335 5.9e-89 331.6 302 64.6
AT1G77930 Arabidopsis thaliana HOM05D007007 ORTHO05D008335 7.7e-89 331.3 296 61.5
Atru.chr13.1299 Acer truncatum HOM05D007007 ORTHO05D008335 2.2e-88 329.7 290 67.6
CARHR071400 Cardamine hirsuta HOM05D007007 ORTHO05D008335 2.9e-88 329.3 294 66.0
AL2G38190 Arabidopsis lyrata HOM05D007007 ORTHO05D008335 1.1e-87 327.4 293 64.5
BcaB02g07139 Brassica carinata HOM05D007007 ORTHO05D008335 1.1e-87 327.4 293 62.8
BcaC08g45443 Brassica carinata HOM05D007007 ORTHO05D008335 3.2e-87 325.9 290 65.2
CiPaw.05G230900 Carya illinoinensis HOM05D007007 ORTHO05D008335 4.2e-87 325.5 295 66.8
AUR62022326 Chenopodium quinoa HOM05D007007 ORTHO05D008335 6.1e-86 321.6 292 63.0
Lsat_1_v5_gn_6_101981 Lactuca sativa HOM05D007007 ORTHO05D008335 8.0e-86 321.2 307 62.5
Oeu035395.1 Olea europaea HOM05D007007 ORTHO05D008335 1.8e-85 320.1 302 61.3
Aa31LG4G8000 Aethionema arabicum HOM05D007007 ORTHO05D008335 4.0e-85 318.9 294 59.9
Aqoxy5G00983 Aquilegia oxysepala HOM05D000003 ORTHO05D008335 4.0e-85 318.9 240 72.5
MSTRG.24958 Avicennia marina HOM05D007007 ORTHO05D008335 4.0e-85 318.9 298 59.7
Migut.N02916 Erythranthe guttata HOM05D007007 ORTHO05D008335 5.2e-85 318.5 297 58.6
TPR.G32949 Trifolium pratense HOM05D007007 ORTHO05D008335 5.2e-85 318.5 293 61.8
Ah.05g168490 Amaranthus hybridus HOM05D007007 ORTHO05D008335 6.8e-85 318.2 289 65.1
EL10Ac1g01704 Beta vulgaris HOM05D007007 ORTHO05D008335 6.8e-85 318.2 295 59.3
AUR62043509 Chenopodium quinoa HOM05D007007 ORTHO05D008335 8.8e-85 317.8 290 62.4
SGA_v2.0_scaffold28G11941 Striga asiatica HOM05D001694 ORTHO05D000248 8.8e-85 317.8 300 59.3
CANSAT01G1447 Cannabis sativa HOM05D007007 ORTHO05D008335 7.5e-84 314.7 289 65.1
HanXRQChr05g0162301 Helianthus annuus HOM05D007007 ORTHO05D008335 3.7e-83 312.4 304 62.8
Nitab4.5_0006745g0010 Nicotiana tabacum HOM05D007007 ORTHO05D008335 4.9e-83 312.0 301 60.8
Cc10_g06060 Coffea canephora HOM05D007007 ORTHO05D008335 8.3e-83 311.2 314 61.1
PSO541G0161 Papaver somniferum HOM05D007007 ORTHO05D008335 1.8e-82 310.1 294 59.2
PSO675G2451 Papaver somniferum HOM05D007007 ORTHO05D008335 2.4e-82 309.7 298 62.1
Manes.18G071800 Manihot esculenta HOM05D007007 ORTHO05D008335 3.1e-82 309.3 293 64.5
A07p27780 Brassica napus HOM05D000382 ORTHO05D008335 4.1e-82 308.9 240 72.5
BraA07t30417Z Brassica rapa HOM05D000382 ORTHO05D008335 4.1e-82 308.9 240 72.5
Sc26g0002350 Simmondsia chinensis HOM05D007007 ORTHO05D008335 7.0e-82 308.1 291 62.9
QL12p035500 Quercus lobata HOM05D007007 ORTHO05D008335 9.2e-82 307.8 293 64.5
C06p30730 Brassica napus HOM05D000382 ORTHO05D008335 2.7e-81 306.2 240 71.2
Cfa015946 Carpinus fangiana HOM05D007007 ORTHO05D008335 2.7e-81 306.2 292 64.4
Nitab4.5_0000425g0200 Nicotiana tabacum HOM05D007007 ORTHO05D008335 2.3e-80 303.1 301 57.5
Sopen12g029530 Solanum pennellii HOM05D007007 ORTHO05D008335 2.3e-80 303.1 301 57.8
PGSC0003DMG400016952 Solanum tuberosum HOM05D007007 ORTHO05D008335 3.8e-80 302.4 301 58.1
unitig_578.g16208 Utricularia gibba HOM05D007007 ORTHO05D008335 5.0e-80 302.0 301 57.1
CDE03G0075 Ceratophyllum demersum HOM05D007007 ORTHO05D008335 6.6e-80 301.6 288 61.1
Medtr3g073560 Medicago truncatula HOM05D000382 ORTHO05D008335 1.1e-79 300.8 290 59.0
Peaxi162Scf00160g01640 Petunia axillaris HOM05D007007 ORTHO05D008335 1.1e-79 300.8 303 57.1
Solyc12g056850.2 Solanum lycopersicum HOM05D007007 ORTHO05D008335 2.5e-79 299.7 301 57.5
Actinidia10285 Actinidia chinensis HOM05D007007 ORTHO05D008335 3.3e-79 299.3 265 62.3
CAN.G47.18 Capsicum annuum HOM05D007007 ORTHO05D008335 9.5e-79 297.7 299 60.9
Rhsim06G0087100 Rhododendron simsii HOM05D007007 ORTHO05D008335 4.7e-78 295.4 392 48.5
Os07g0626400 Oryza sativa ssp. japonica HOM05D007007 ORTHO05D008335 6.8e-77 291.6 228 64.9
Zm00001eb327980 Zea mays HOM05D007007 ORTHO05D008335 2.0e-76 290.0 227 66.1
DCAR_009583 Daucus carota HOM05D007007 ORTHO05D008335 9.8e-76 287.7 293 60.8
FAN08G0847 Fragaria x ananassa HOM05D000382 ORTHO05D008335 1.3e-75 287.3 290 56.6
Haze_00544 Corylus avellana HOM05D007007 ORTHO05D008335 2.2e-75 286.6 318 58.8
ECA246G4837 Erigeron canadensis HOM05D000382 ORTHO05D008335 2.4e-74 283.1 239 62.8
arahy.Tifrunner.gnm1.ann1.4WA5US Arachis hypogaea HOM05D000382 ORTHO05D008335 4.7e-70 268.9 206 68.0
SEGI_37339 Sequoiadendron giganteum HOM05D007007 ORTHO05D008335 4.7e-70 268.9 289 50.9
Dinv44721 Davidia involucrata HOM05D007007 ORTHO05D008335 3.7e-67 259.2 176 76.1
Psat5g136560 Pisum sativum HOM05D007007 ORTHO05D008335 3.2e-66 256.1 204 67.2
Hund26658 Selenicereus undatus HOM05D007007 ORTHO05D008335 9.2e-66 254.6 291 56.0
Glyma.04G254700 Glycine max HOM05D007007 ORTHO05D008335 1.1e-61 241.1 163 81.0
vmacro21211 Vaccinium macrocarpon HOM05D007007 ORTHO05D008335 1.2e-60 237.7 311 46.3
ATR0564G456 Amborella trichopoda HOM05D007007 ORTHO05D008335 4.4e-60 235.7 160 74.4
arahy.Tifrunner.gnm1.ann1.J1JBQA Arachis hypogaea HOM05D007007 ORTHO05D008335 5.8e-60 235.3 260 52.3
AagrBONN_evm.TU.Sc2ySwM_344.1161 Anthoceros agrestis HOM05D007007 ORTHO05D008335 1.4e-58 230.7 304 49.0
Glyma.06G107400 Glycine max HOM05D007007 ORTHO05D008335 1.4e-58 230.7 161 80.7
Mapoly0002s0118 Marchantia polymorpha HOM05D007007 ORTHO05D008335 4.1e-58 229.2 218 53.7
SMO367G0886 Selaginella moellendorffii HOM05D007007 ORTHO05D008335 2.3e-56 223.4 218 55.0
Pp3c4_24430 Physcomitrium patens HOM05D007007 ORTHO05D008335 1.1e-53 214.5 259 47.1
Actinidia15631 Actinidia chinensis HOM05D007007 ORTHO05D008335 6.8e-53 211.8 204 59.8
HanXRQChr14g0427051 Helianthus annuus HOM05D007007 ORTHO05D008335 8.4e-51 204.9 127 78.0
TAR628G0829 Trochodendron aralioides HOM05D000382 ORTHO05D000391 3.2e-50 203.0 139 75.5
CSS0030134 Camellia sinensis var. sinensis HOM05D007007 ORTHO05D008335 9.6e-39 164.9 157 59.9
Hma1.2p1_1060F.1_g253190 Hydrangea macrophylla HOM05D007007 ORTHO05D008335 1.9e-34 150.6 95 80.0
Actinidia26526 Actinidia chinensis HOM05D007007 ORTHO05D008335 1.3e-24 117.9 67 86.6
CSS0009195 Camellia sinensis var. sinensis HOM05D007007 ORTHO05D008335 9.6e-23 111.7 128 49.2
Zm00001eb225930 Zea mays HOM05D007007 ORTHO05D008335 9.6e-23 111.7 73 68.5
Zm00001eb414200 Zea mays HOM05D007007 ORTHO05D008335 9.6e-23 111.7 72 69.4
CBR_g28090 Chara braunii HOM05D007007 ORTHO05D008335 2.8e-14 83.6 91 50.5
vmacro21212 Vaccinium macrocarpon HOM05D007007 ORTHO05D008335 4.2e-10 69.7 85 49.4
BolC5t33587H Brassica oleracea HOM05D000367 ORTHO05D001438 1.8e-08 64.3 149 33.6
BraA05t22029Z Brassica rapa HOM05D000367 ORTHO05D001438 1.5e-07 61.2 149 33.6
A05p31980 Brassica napus HOM05D000367 ORTHO05D001438 3.3e-07 60.1 149 32.9
CAN.G843.37 Capsicum annuum HOM05D000367 ORTHO05D001438 3.3e-07 60.1 130 34.6
TWI60G1575 Tripterygium wilfordii HOM05D000367 ORTHO05D001438 4.3e-07 59.7 153 30.7
Zm00001eb207340 Zea mays HOM05D007007 ORTHO05D008335 4.3e-07 59.7 41 73.2
Zm00001eb350940 Zea mays HOM05D007007 ORTHO05D008335 4.3e-07 59.7 41 73.2
MCO10G135 Micromonas commoda HOM05D000175 ORTHO05D003181 7.4e-07 58.9 94 37.2
Nn4g24317 Nelumbo nucifera HOM05D000367 ORTHO05D001438 7.4e-07 58.9 103 37.9
Sc10g0009130 Simmondsia chinensis HOM05D000367 ORTHO05D001438 7.4e-07 58.9 127 34.6
CSS0004815 Camellia sinensis var. sinensis HOM05D000367 ORTHO05D001438 9.7e-07 58.5 147 31.3
CSS0043154 Camellia sinensis var. sinensis HOM05D000367 ORTHO05D001438 9.7e-07 58.5 147 31.3
Sopen03g037380 Solanum pennellii HOM05D000367 ORTHO05D001438 1.3e-06 58.2 145 32.4
PGSC0003DMG401014186 Solanum tuberosum HOM05D000367 ORTHO05D001438 1.3e-06 58.2 145 32.4
Zm00001eb237670 Zea mays HOM05D007007 ORTHO05D008335 1.3e-06 58.2 41 70.7
RcHm_v2.0_Chr7g0178061 Rosa chinensis HOM05D000367 ORTHO05D001438 1.6e-06 57.8 87 39.1
Actinidia26525 Actinidia chinensis HOM05D007007 ORTHO05D008335 2.2e-06 57.4 56 53.6
CBR_g28854 Chara braunii HOM05D000019 ORTHO05D000048 2.2e-06 57.4 120 29.2
Dinv06375 Davidia involucrata HOM05D000367 ORTHO05D001438 2.2e-06 57.4 152 30.9
FAN08G0061 Fragaria x ananassa HOM05D001185 ORTHO05D001438 2.2e-06 57.4 88 37.5
HPP92_024342 Vanilla planifolia HOM05D000367 ORTHO05D001438 2.2e-06 57.4 101 36.6
Phvul.006G060700 Phaseolus vulgaris HOM05D001140 ORTHO05D000470 2.8e-06 57.0 90 37.8
Solyc03g118500.3 Solanum lycopersicum HOM05D000367 ORTHO05D001438 2.8e-06 57.0 145 31.7
Cre07.g320150 Chlamydomonas reinhardtii HOM05D000175 ORTHO05D004574 3.7e-06 56.6 110 32.7
FAN04G0490 Fragaria x ananassa HOM05D000367 ORTHO05D001438 3.7e-06 56.6 87 37.9
FAN18G3573 Fragaria x ananassa HOM05D001185 ORTHO05D001438 3.7e-06 56.6 87 37.9
Pp3c1_16600 Physcomitrium patens HOM05D001714 ORTHO05D001932 3.7e-06 56.6 93 38.7
Potri.015G035300 Populus trichocarpa HOM05D000367 ORTHO05D001438 3.7e-06 56.6 87 39.1
AL3G30990 Arabidopsis lyrata HOM05D000367 ORTHO05D001438 4.8e-06 56.2 154 31.8
QL10p031268 Quercus lobata HOM05D000367 ORTHO05D001438 4.8e-06 56.2 159 32.7
AT3G17830 Arabidopsis thaliana HOM05D000367 ORTHO05D001438 6.3e-06 55.8 154 31.8
Cfa027315 Carpinus fangiana HOM05D001714 ORTHO05D003181 6.3e-06 55.8 89 37.1
Pp3c7_12990 Physcomitrium patens HOM05D001714 ORTHO05D001932 6.3e-06 55.8 101 37.6
Sabra15G0029200 Salix brachista HOM05D000367 ORTHO05D001438 6.3e-06 55.8 141 32.6
TAR623G0041 Trochodendron aralioides HOM05D006731 ORTHO05D007597 6.3e-06 55.8 145 29.0
VMungo0540G2185 Vigna mungo HOM05D001140 ORTHO05D000470 6.3e-06 55.8 87 36.8
A01p02690 Brassica napus HOM05D001140 ORTHO05D000470 8.2e-06 55.5 187 31.6
CANSAT80G1180 Cannabis sativa HOM05D000367 ORTHO05D001438 8.2e-06 55.5 87 36.8
Medtr2g097690 Medicago truncatula HOM05D006731 ORTHO05D007597 8.2e-06 55.5 167 26.9
Nitab4.5_0002046g0130 Nicotiana tabacum HOM05D000367 ORTHO05D001438 8.2e-06 55.5 145 31.0
TAR629G0899 Trochodendron aralioides HOM05D000367 ORTHO05D001438 8.2e-06 55.5 164 33.5


User provided reference genes

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