Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG08G010560 Citrullus lanatus HOM05D005042 ORTHO05D006080 1.9e-259 898.7 469 100.0
MELO3C011406.2 Cucumis melo HOM05D005042 ORTHO05D006080 1.4e-180 636.7 431 81.0
CsaV3_6G033840 Cucumis sativus L. HOM05D005042 ORTHO05D006080 4.9e-178 628.2 431 80.3
Sed0017498 Sechium edule HOM05D005042 ORTHO05D006080 1.2e-120 437.6 372 66.4
CiPaw.06G094600 Carya illinoinensis HOM05D005042 ORTHO05D006080 3.4e-54 216.9 684 30.7
Eucgr.G02425 Eucalyptus grandis HOM05D005042 ORTHO05D006080 1.3e-53 214.9 554 35.0
HanXRQChr17g0570091 Helianthus annuus HOM05D005042 ORTHO05D006080 4.6e-51 206.5 442 38.0
Lsat_1_v5_gn_3_106381 Lactuca sativa HOM05D005042 ORTHO05D006080 3.9e-50 203.4 453 38.0
Potri.008G109100 Populus trichocarpa HOM05D005042 ORTHO05D006080 4.3e-49 199.9 211 55.9
Potri.T155180 Populus trichocarpa HOM05D005042 ORTHO05D006080 4.3e-49 199.9 211 55.9
CiPaw.05G122400 Carya illinoinensis HOM05D005042 ORTHO05D006080 1.3e-48 198.4 208 59.6
Potri.010G139100 Populus trichocarpa HOM05D005042 ORTHO05D006080 3.7e-48 196.8 215 55.3
Migut.E00252 Erythranthe guttata HOM05D005042 ORTHO05D006080 1.4e-47 194.9 484 36.0
Rhsim12G0071400 Rhododendron simsii HOM05D005042 ORTHO05D006080 1.2e-46 191.8 602 32.4
Manes.01G025000 Manihot esculenta HOM05D005042 ORTHO05D006080 4.5e-46 189.9 202 55.9
Actinidia07770 Actinidia chinensis HOM05D005042 ORTHO05D006080 1.0e-45 188.7 256 49.6
Lj3A1027T86 Lonicera japonica HOM05D005042 ORTHO05D006080 1.7e-45 188.0 681 30.2
EL10Ac6g14684 Beta vulgaris HOM05D005042 ORTHO05D006080 2.9e-45 187.2 576 29.7
Rhsim09G0122700 Rhododendron simsii HOM05D005042 ORTHO05D006080 2.9e-45 187.2 251 50.6
CANSAT11G1456 Cannabis sativa HOM05D005042 ORTHO05D006080 3.8e-45 186.8 202 54.5
TAR726G0003 Trochodendron aralioides HOM05D005042 ORTHO05D006080 4.9e-45 186.4 201 56.7
AUR62003064 Chenopodium quinoa HOM05D005042 ORTHO05D006080 6.5e-45 186.0 542 32.5
Cc11_g11610 Coffea canephora HOM05D005042 ORTHO05D006080 6.5e-45 186.0 619 31.3
Phvul.003G038600 Phaseolus vulgaris HOM05D005042 ORTHO05D006080 2.5e-44 184.1 270 48.1
ECA246G3902 Erigeron canadensis HOM05D005042 ORTHO05D006080 9.3e-44 182.2 528 32.4
Hund25158 Selenicereus undatus HOM05D005042 ORTHO05D006080 1.2e-43 181.8 586 31.2
AUR62007879 Chenopodium quinoa HOM05D005042 ORTHO05D006080 3.5e-43 180.3 501 33.3
Oeu021807.1 Olea europaea HOM05D005042 ORTHO05D006080 4.6e-43 179.9 465 35.1
TAR371G1247 Trochodendron aralioides HOM05D005042 ORTHO05D006080 2.3e-42 177.6 288 43.1
Cfa008851 Carpinus fangiana HOM05D005042 ORTHO05D006080 6.7e-42 176.0 257 47.5
COL.COLO4_27836 Corchorus olitorius HOM05D005042 ORTHO05D006080 5.7e-41 172.9 211 52.1
Lalb_Chr17g0341431 Lupinus albus HOM05D005042 ORTHO05D006080 7.4e-41 172.6 202 54.0
vmacro10479 Vaccinium macrocarpon HOM05D005042 ORTHO05D006080 1.6e-40 171.4 228 51.3
vmacro01299 Vaccinium macrocarpon HOM05D005042 ORTHO05D006080 2.8e-40 170.6 333 40.5
Dinv34024 Davidia involucrata HOM05D005042 ORTHO05D006080 3.7e-40 170.2 208 54.3
Oeu024162.6 Olea europaea HOM05D005042 ORTHO05D006080 6.9e-39 166.0 202 53.0
Oeu055079.1 Olea europaea HOM05D005042 ORTHO05D006080 6.9e-39 166.0 203 53.7
Prupe.1G292900 Prunus persica HOM05D005042 ORTHO05D006080 6.9e-39 166.0 684 28.4
Haze_11871 Corylus avellana HOM05D005042 ORTHO05D006080 1.5e-38 164.9 734 27.2
Lj2g0019338 Lotus japonicus HOM05D005042 ORTHO05D006080 7.6e-38 162.5 209 47.8
Thecc.02G323700 Theobroma cacao HOM05D005042 ORTHO05D006080 1.3e-37 161.8 640 29.7
Glyma.02G122200 Glycine max HOM05D005042 ORTHO05D006080 2.2e-37 161.0 219 49.8
ATR0827G068 Amborella trichopoda HOM05D005042 ORTHO05D006080 3.8e-37 160.2 199 50.8
PSO478G2238 Papaver somniferum HOM05D005042 ORTHO05D006080 8.4e-37 159.1 196 49.0
arahy.Tifrunner.gnm1.ann1.U4ZHW1 Arachis hypogaea HOM05D005042 ORTHO05D006080 7.2e-36 156.0 574 31.7
Atru.chr11.1578 Acer truncatum HOM05D005042 ORTHO05D006080 3.5e-35 153.7 201 50.2
PSO017G3437 Papaver somniferum HOM05D005042 ORTHO05D006080 3.5e-35 153.7 196 46.9
CDE10G0431 Ceratophyllum demersum HOM05D005042 ORTHO05D006080 1.0e-34 152.1 381 35.4
Solyc05g011950.3 Solanum lycopersicum HOM05D005042 ORTHO05D006080 1.3e-34 151.8 200 49.5
CSS0000751 Camellia sinensis var. sinensis HOM05D005042 ORTHO05D006080 6.7e-34 149.4 248 43.5
unitig_62.g23700 Utricularia gibba HOM05D005042 ORTHO05D006080 3.3e-33 147.1 497 30.6
Peaxi162Scf00188g01341 Petunia axillaris HOM05D005042 ORTHO05D006080 4.3e-33 146.7 546 31.0
Sabra10G0107300 Salix brachista HOM05D005042 ORTHO05D006080 4.3e-33 146.7 139 61.2
TWI31G0262 Tripterygium wilfordii HOM05D005042 ORTHO05D006080 9.7e-33 145.6 678 27.6
TPR.G38503 Trifolium pratense HOM05D005042 ORTHO05D006080 1.3e-32 145.2 493 31.6
Aqoxy3G03731 Aquilegia oxysepala HOM05D005042 ORTHO05D006080 3.7e-32 143.7 272 38.6
Sabra08G0082800 Salix brachista HOM05D005042 ORTHO05D006080 3.7e-32 143.7 407 32.4
Nn4g23527 Nelumbo nucifera HOM05D005042 ORTHO05D006080 6.3e-32 142.9 201 47.8
SGA_v2.0_scaffold287G47187 Striga asiatica HOM05D005042 ORTHO05D006080 1.1e-31 142.1 320 37.2
Medtr5g047140 Medicago truncatula HOM05D005042 ORTHO05D006080 1.4e-31 141.7 207 44.4
VMungo1215G3453 Vigna mungo HOM05D005042 ORTHO05D006080 3.1e-31 140.6 169 53.8
Cpa.g.sc1.165 Carica papaya HOM05D005042 ORTHO05D006080 4.1e-31 140.2 228 42.5
MBI16_g07040_MAGBIO Magnolia biondii HOM05D005042 ORTHO05D006080 5.3e-31 139.8 620 27.4
SEGI_40784 Sequoiadendron giganteum HOM05D005042 ORTHO05D006080 9.0e-31 139.0 477 30.6
Lalb_Chr10g0099121 Lupinus albus HOM05D005042 ORTHO05D006080 1.2e-30 138.7 202 46.5
Duzib251G0840 Durio zibethinus HOM05D005042 ORTHO05D006080 1.5e-30 138.3 647 27.7
Psat2g093520 Pisum sativum HOM05D005042 ORTHO05D006080 4.5e-30 136.7 220 42.3
CAN.G1021.3 Capsicum annuum HOM05D005042 ORTHO05D006080 5.0e-29 133.3 565 30.1
Sopen05g006680 Solanum pennellii HOM05D000061 ORTHO05D000050 8.5e-29 132.5 187 48.1
TPR.G34179 Trifolium pratense HOM05D005042 ORTHO05D006080 1.4e-28 131.7 203 44.8
HPP92_000883 Vanilla planifolia HOM05D005042 ORTHO05D006080 1.9e-28 131.3 256 39.8
AT1G69060 Arabidopsis thaliana HOM05D005042 ORTHO05D006080 3.2e-28 130.6 203 44.8
Solyc05g011930.4 Solanum lycopersicum HOM05D005042 ORTHO05D006080 4.2e-28 130.2 557 29.6
Aa31LG4G11790 Aethionema arabicum HOM05D005042 ORTHO05D006080 9.4e-28 129.0 203 42.9
MD16G1056300 Malus domestica HOM05D005042 ORTHO05D006080 1.2e-27 128.6 670 26.6
Sopen05g006670 Solanum pennellii HOM05D005042 ORTHO05D006080 1.2e-27 128.6 556 29.5
Ciclev10030834m.g Citrus clementina HOM05D005042 ORTHO05D006080 1.6e-27 128.3 211 43.1
THA.LOC104821992 Tarenaya hassleriana HOM05D005042 ORTHO05D006080 2.1e-27 127.9 500 27.8
Pp3c1_680 Physcomitrium patens HOM05D005042 ORTHO05D006080 1.0e-26 125.6 218 41.3
PGR119G2532 Punica granatum HOM05D005042 ORTHO05D006080 1.4e-26 125.2 674 25.8
PGSC0003DMG400028304 Solanum tuberosum HOM05D005042 ORTHO05D006080 1.4e-26 125.2 557 29.4
arahy.Tifrunner.gnm1.ann1.L0BNS4 Arachis hypogaea HOM05D005042 ORTHO05D006080 2.3e-26 124.4 149 51.0
AagrBONN_evm.TU.Sc2ySwM_117.2775 Anthoceros agrestis HOM05D005042 ORTHO05D006080 6.7e-26 122.9 199 41.7
TWI79G1206 Tripterygium wilfordii HOM05D005042 ORTHO05D006080 6.7e-26 122.9 678 25.8
FAN07G1705 Fragaria x ananassa HOM05D005042 ORTHO05D006080 1.5e-25 121.7 202 45.5
QL05p008217 Quercus lobata HOM05D005042 ORTHO05D006080 3.3e-25 120.6 214 42.5
Nitab4.5_0012072g0010 Nicotiana tabacum HOM05D005042 ORTHO05D006080 5.7e-25 119.8 200 44.0
TPR.G37754 Trifolium pratense HOM05D005042 ORTHO05D006080 5.7e-25 119.8 202 41.1
Ca_05058_v3 Cicer arietinum L. HOM05D005042 ORTHO05D006080 4.8e-24 116.7 502 27.5
Oeu057419.1 Olea europaea HOM05D005042 ORTHO05D006080 4.8e-24 116.7 202 42.6
CAN.G1021.18 Capsicum annuum HOM05D005042 ORTHO05D006080 1.8e-23 114.8 173 43.9
DCAR_030054 Daucus carota HOM05D005042 ORTHO05D006080 4.1e-23 113.6 395 32.2
FAN17G2893 Fragaria x ananassa HOM05D005042 ORTHO05D006080 6.9e-23 112.8 220 40.5
RcHm_v2.0_Chr4g0437421 Rosa chinensis HOM05D005042 ORTHO05D006080 9.1e-23 112.5 201 41.3
Gorai.009G327100 Gossypium raimondii HOM05D005042 ORTHO05D006080 1.5e-22 111.7 631 25.4
CARHR061940 Cardamine hirsuta HOM05D005042 ORTHO05D006080 2.0e-22 111.3 195 41.5
Glyma.01G064400 Glycine max HOM05D005042 ORTHO05D006080 2.6e-22 110.9 201 41.8
Lsat_1_v5_gn_4_25561 Lactuca sativa HOM05D005042 ORTHO05D006080 4.5e-22 110.2 335 31.0
SEGI_37091 Sequoiadendron giganteum HOM05D005042 ORTHO05D006080 4.5e-22 110.2 394 29.9
Gohir.A05G306900 Gossypium hirsutum HOM05D005042 ORTHO05D006080 5.9e-22 109.8 635 25.4
Gohir.D05G307200 Gossypium hirsutum HOM05D005042 ORTHO05D006080 5.9e-22 109.8 631 25.4
TAR629G0517 Trochodendron aralioides HOM05D005042 ORTHO05D006080 7.7e-22 109.4 206 40.8
FAN22G1919 Fragaria x ananassa HOM05D005042 ORTHO05D006080 1.7e-21 108.2 202 41.6
FvH4_4g29350 Fragaria vesca HOM05D005042 ORTHO05D006080 2.2e-21 107.8 220 40.0
CAN.G1021.10 Capsicum annuum HOM05D005042 ORTHO05D006080 5.0e-21 106.7 199 40.2
FAN12G1549 Fragaria x ananassa HOM05D005042 ORTHO05D006080 8.5e-21 105.9 220 39.5
Mapoly0211s0012 Marchantia polymorpha HOM05D005042 ORTHO05D006080 1.9e-20 104.8 257 35.4
Ah.03g138660 Amaranthus hybridus HOM05D000485 ORTHO05D000341 3.2e-20 104.0 218 37.6
Nitab4.5_0000027g0180 Nicotiana tabacum HOM05D005042 ORTHO05D006080 3.2e-20 104.0 212 40.6
MD13G1056900 Malus domestica HOM05D005042 ORTHO05D006080 7.2e-20 102.8 661 25.0
GSVIVG01012257001 Vitis vinifera HOM05D005042 ORTHO05D006080 1.2e-19 102.1 262 34.7
ECA234G0547 Erigeron canadensis HOM05D005042 ORTHO05D006080 1.6e-19 101.7 439 29.6
Pp3c2_29040 Physcomitrium patens HOM05D005042 ORTHO05D006080 1.6e-19 101.7 201 38.3
Carub.0002s1568 Capsella rubella HOM05D005042 ORTHO05D006080 7.9e-19 99.4 559 26.8
Dinv15584 Davidia involucrata HOM05D000485 ORTHO05D000341 3.0e-18 97.4 217 35.0
HanXRQChr16g0527171 Helianthus annuus HOM05D005042 ORTHO05D006080 3.9e-18 97.1 202 40.6
Zm00001eb057530 Zea mays HOM05D005042 ORTHO05D006080 3.9e-18 97.1 223 37.2
DCAR_023741 Daucus carota HOM05D005042 ORTHO05D006080 1.1e-17 95.5 139 43.9
Nn3g17525 Nelumbo nucifera HOM05D005042 ORTHO05D006080 1.1e-17 95.5 88 61.4
CAN.G1021.20 Capsicum annuum HOM05D005042 ORTHO05D006080 5.7e-17 93.2 168 37.5
Sp5g24160 Schrenkiella parvula HOM05D005042 ORTHO05D006080 5.7e-17 93.2 201 35.8
DCAR_007205 Daucus carota HOM05D005042 ORTHO05D006080 2.2e-16 91.3 492 26.4
PSO063G2731 Papaver somniferum HOM05D005042 ORTHO05D006080 2.2e-16 91.3 600 24.8
Manes.14G088800 Manihot esculenta HOM05D005042 ORTHO05D006080 3.7e-16 90.5 352 30.1
Dinv15585 Davidia involucrata HOM05D005042 ORTHO05D006080 4.8e-16 90.1 108 50.0
Sc04g0007390 Simmondsia chinensis HOM05D005042 ORTHO05D006080 8.2e-16 89.4 570 24.6
AL2G28110 Arabidopsis lyrata HOM05D005042 ORTHO05D006080 1.4e-15 88.6 202 36.1
C06p40780 Brassica napus HOM05D005042 ORTHO05D006080 1.4e-15 88.6 201 35.3
BolC6t39355H Brassica oleracea HOM05D005042 ORTHO05D006080 1.4e-15 88.6 201 35.3
CAN.G1021.19 Capsicum annuum HOM05D005042 ORTHO05D006080 4.1e-15 87.0 177 39.0
PSO782G3512 Papaver somniferum HOM05D005042 ORTHO05D006080 5.3e-15 86.7 601 24.5
CDE10G0071 Ceratophyllum demersum HOM05D005042 ORTHO05D006080 7.0e-15 86.3 133 40.6
PGSC0003DMG400028305 Solanum tuberosum HOM05D005042 ORTHO05D006080 1.2e-14 85.5 124 45.2
COL.COLO4_27818 Corchorus olitorius HOM05D005042 ORTHO05D006080 2.6e-14 84.3 539 26.2
CAN.G1021.24 Capsicum annuum HOM05D005042 ORTHO05D006080 1.0e-13 82.4 169 37.3
Thhalv10018302m.g Eutrema salsugineum HOM05D005042 ORTHO05D006080 1.0e-13 82.4 322 28.9
Solyc05g011960.4 Solanum lycopersicum HOM05D005042 ORTHO05D006080 1.0e-13 82.4 124 42.7
Sopen05g006700 Solanum pennellii HOM05D005042 ORTHO05D006080 2.2e-13 81.3 124 41.9
A07p35450 Brassica napus HOM05D005042 ORTHO05D006080 2.9e-13 80.9 201 33.8
BraA07t31136Z Brassica rapa HOM05D005042 ORTHO05D006080 2.9e-13 80.9 201 33.8
TAR371G1032 Trochodendron aralioides HOM05D005042 ORTHO05D006080 2.5e-12 77.8 223 31.8
Os03g0752700 Oryza sativa ssp. japonica HOM05D005042 ORTHO05D006080 9.4e-12 75.9 395 27.1
arahy.Tifrunner.gnm1.ann1.6TZ00L Arachis hypogaea HOM05D005042 ORTHO05D006080 3.1e-07 60.8 419 26.0


User provided reference genes

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