Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG08G010510 Citrullus lanatus HOM05D004399 ORTHO05D005303 3.7e-131 471.5 227 100.0
MELO3C011412.2 Cucumis melo HOM05D004399 ORTHO05D005303 4.0e-125 451.4 225 95.6
CsaV3_6G033760 Cucumis sativus L. HOM05D004399 ORTHO05D005303 4.0e-125 451.4 225 95.6
Sed0000590 Sechium edule HOM05D004399 ORTHO05D005303 1.5e-116 422.9 222 90.1
Manes.05G109300 Manihot esculenta HOM05D004399 ORTHO05D005303 1.4e-114 416.4 227 85.5
Eucgr.B03145 Eucalyptus grandis HOM05D004399 ORTHO05D005303 5.4e-114 414.5 225 85.3
QL03p073920 Quercus lobata HOM05D004399 ORTHO05D005303 5.4e-114 414.5 224 87.1
Cpa.g.sc1.139 Carica papaya HOM05D004399 ORTHO05D005303 1.6e-113 412.9 221 87.3
MD13G1060600 Malus domestica HOM05D004399 ORTHO05D005303 2.1e-113 412.5 225 84.4
Prupe.1G288800 Prunus persica HOM05D004399 ORTHO05D005303 2.1e-113 412.5 225 84.9
Sed0002833 Sechium edule HOM05D004399 ORTHO05D005303 2.7e-113 412.1 222 88.3
Duzib251G0565 Durio zibethinus HOM05D004399 ORTHO05D005303 6.0e-113 411.0 225 84.9
CiPaw.05G124200 Carya illinoinensis HOM05D004399 ORTHO05D005303 3.9e-112 408.3 225 85.8
Hund05832 Selenicereus undatus HOM05D004399 ORTHO05D005303 5.1e-112 407.9 224 84.8
COL.COLO4_27864 Corchorus olitorius HOM05D004399 ORTHO05D005303 8.6e-112 407.1 220 85.5
Gohir.A03G104700 Gossypium hirsutum HOM05D004399 ORTHO05D005303 1.5e-111 406.4 225 83.6
Potri.008G097100 Populus trichocarpa HOM05D004399 ORTHO05D005303 1.5e-111 406.4 224 83.9
Cfa008867 Carpinus fangiana HOM05D004399 ORTHO05D005303 2.5e-111 405.6 225 85.8
Haze_11894 Corylus avellana HOM05D004399 ORTHO05D005303 3.3e-111 405.2 225 85.3
PGR083G0959 Punica granatum HOM05D004399 ORTHO05D005303 3.3e-111 405.2 225 81.8
TWI75G0511 Tripterygium wilfordii HOM05D004399 ORTHO05D005303 3.3e-111 405.2 225 84.0
Potri.010G157500 Populus trichocarpa HOM05D004399 ORTHO05D005303 7.3e-111 404.1 224 83.5
Thecc.02G328800 Theobroma cacao HOM05D004399 ORTHO05D005303 7.3e-111 404.1 225 84.0
TAR622G1336 Trochodendron aralioides HOM05D004399 ORTHO05D005303 1.2e-110 403.3 226 84.5
Dinv34060 Davidia involucrata HOM05D004399 ORTHO05D005303 1.6e-110 402.9 227 82.8
CANSAT64G2641 Cannabis sativa HOM05D004399 ORTHO05D005303 2.1e-110 402.5 221 85.1
Cc06_g15640 Coffea canephora HOM05D004399 ORTHO05D005303 4.7e-110 401.4 226 82.7
Lj1g0019699 Lotus japonicus HOM05D004399 ORTHO05D005303 4.7e-110 401.4 224 85.7
Ca_25695_v3 Cicer arietinum L. HOM05D004399 ORTHO05D005303 6.2e-110 401.0 224 83.9
FAN22G0874 Fragaria x ananassa HOM05D004399 ORTHO05D005303 6.2e-110 401.0 225 81.8
Sc11g0002530 Simmondsia chinensis HOM05D004399 ORTHO05D005303 6.2e-110 401.0 221 83.7
Ah.02g126810 Amaranthus hybridus HOM05D004399 ORTHO05D005303 8.1e-110 400.6 221 84.6
Ciclev10032681m.g Citrus clementina HOM05D004399 ORTHO05D005303 8.1e-110 400.6 224 82.6
RcHm_v2.0_Chr4g0438081 Rosa chinensis HOM05D004399 ORTHO05D005303 8.1e-110 400.6 225 81.3
EL10Ac6g15013 Beta vulgaris HOM05D004399 ORTHO05D005303 1.1e-109 400.2 224 83.0
FvH4_4g29830 Fragaria vesca HOM05D004399 ORTHO05D005303 1.1e-109 400.2 225 82.2
CSS0044473 Camellia sinensis var. sinensis HOM05D004399 ORTHO05D005303 1.8e-109 399.4 228 82.0
FAN17G2847 Fragaria x ananassa HOM05D004399 ORTHO05D005303 1.8e-109 399.4 225 81.8
Psat3g063920 Pisum sativum HOM05D004399 ORTHO05D005303 2.3e-109 399.1 224 83.9
Lalb_Chr17g0341271 Lupinus albus HOM05D004399 ORTHO05D005303 4.0e-109 398.3 224 83.9
Ah.03g138840 Amaranthus hybridus HOM05D004399 ORTHO05D005303 5.2e-109 397.9 224 82.6
arahy.Tifrunner.gnm1.ann1.MJW4NY Arachis hypogaea HOM05D004399 ORTHO05D005303 5.2e-109 397.9 224 83.0
CANSAT11G0637 Cannabis sativa HOM05D004399 ORTHO05D005303 5.2e-109 397.9 221 84.2
MD16G1059800 Malus domestica HOM05D004399 ORTHO05D005303 5.2e-109 397.9 225 81.3
Migut.L01179 Erythranthe guttata HOM05D004399 ORTHO05D005303 6.8e-109 397.5 226 81.4
AUR62003087 Chenopodium quinoa HOM05D004399 ORTHO05D005303 8.9e-109 397.1 222 82.9
FAN12G0059 Fragaria x ananassa HOM05D004399 ORTHO05D005303 1.2e-108 396.7 225 81.8
Nn3g17119 Nelumbo nucifera HOM05D004399 ORTHO05D005303 1.2e-108 396.7 227 82.4
Sabra08G0073300 Salix brachista HOM05D004399 ORTHO05D005303 1.2e-108 396.7 224 83.5
Ca_08608_v3 Cicer arietinum L. HOM05D004399 ORTHO05D005303 2.0e-108 396.0 219 84.9
Lj6A777T47 Lonicera japonica HOM05D004399 ORTHO05D005303 2.0e-108 396.0 218 84.9
Aqoxy3G03260 Aquilegia oxysepala HOM05D004399 ORTHO05D005303 2.6e-108 395.6 224 82.6
Medtr4g094990 Medicago truncatula HOM05D004399 ORTHO05D005303 2.6e-108 395.6 224 83.0
Peaxi162Scf00175g00428 Petunia axillaris HOM05D004399 ORTHO05D005303 7.6e-108 394.0 225 80.9
Phvul.010G102900 Phaseolus vulgaris HOM05D004399 ORTHO05D005303 7.6e-108 394.0 224 83.0
arahy.Tifrunner.gnm1.ann1.E76E6E Arachis hypogaea HOM05D004399 ORTHO05D005303 1.3e-107 393.3 224 82.6
HanXRQChr12g0363151 Helianthus annuus HOM05D004399 ORTHO05D005303 1.7e-107 392.9 225 81.8
Nn4g24779 Nelumbo nucifera HOM05D004399 ORTHO05D005303 1.7e-107 392.9 225 82.2
CAN.G707.11 Capsicum annuum HOM05D004399 ORTHO05D005303 2.2e-107 392.5 225 80.4
Lj3C1029T7 Lonicera japonica HOM05D004399 ORTHO05D005303 2.2e-107 392.5 225 82.2
Carub.0005s0281 Capsella rubella HOM05D004399 ORTHO05D005303 2.9e-107 392.1 220 81.8
ECA233G2368 Erigeron canadensis HOM05D004399 ORTHO05D005303 2.9e-107 392.1 221 82.4
Gorai.005G145900 Gossypium raimondii HOM05D004399 ORTHO05D005303 2.9e-107 392.1 211 85.8
vmacro10433 Vaccinium macrocarpon HOM05D004399 ORTHO05D005303 2.9e-107 392.1 224 82.1
AL5G13480 Arabidopsis lyrata HOM05D004399 ORTHO05D005303 3.7e-107 391.7 220 81.8
BcaC06g31162 Brassica carinata HOM05D004399 ORTHO05D005303 3.7e-107 391.7 219 82.6
C07p34040 Brassica napus HOM05D004399 ORTHO05D005303 3.7e-107 391.7 219 82.6
BolC7t43918H Brassica oleracea HOM05D004399 ORTHO05D005303 3.7e-107 391.7 219 82.6
Sp2g14510 Schrenkiella parvula HOM05D004399 ORTHO05D005303 3.7e-107 391.7 220 82.3
PGSC0003DMG402028313 Solanum tuberosum HOM05D004399 ORTHO05D005303 6.4e-107 391.0 225 80.0
A06p42990 Brassica napus HOM05D004399 ORTHO05D005303 8.3e-107 390.6 220 81.8
AUR62007904 Chenopodium quinoa HOM05D004399 ORTHO05D005303 8.3e-107 390.6 222 81.1
DCAR_024127 Daucus carota HOM05D004399 ORTHO05D005303 8.3e-107 390.6 216 85.6
VMungo0331G0538 Vigna mungo HOM05D004399 ORTHO05D005303 8.3e-107 390.6 224 82.6
BcaC06g31172 Brassica carinata HOM05D004399 ORTHO05D005303 1.1e-106 390.2 220 82.3
Gohir.D02G129900 Gossypium hirsutum HOM05D004399 ORTHO05D005303 1.4e-106 389.8 211 85.3
SGA_v2.0_scaffold16G07803 Striga asiatica HOM05D004399 ORTHO05D005303 1.4e-106 389.8 224 80.8
Solyc05g012150.4 Solanum lycopersicum HOM05D004399 ORTHO05D005303 1.9e-106 389.4 225 80.0
Sopen05g006940 Solanum pennellii HOM05D004399 ORTHO05D005303 1.9e-106 389.4 225 80.0
PSO017G5651 Papaver somniferum HOM05D004399 ORTHO05D005303 2.4e-106 389.0 225 80.9
PSO832G2862 Papaver somniferum HOM05D004399 ORTHO05D005303 4.1e-106 388.3 225 81.3
Aa31LG2G6990 Aethionema arabicum HOM05D004399 ORTHO05D005303 7.1e-106 387.5 224 79.0
AT2G03690 Arabidopsis thaliana HOM05D004399 ORTHO05D005303 7.1e-106 387.5 220 80.9
Thhalv10004874m.g Eutrema salsugineum HOM05D004399 ORTHO05D005303 9.2e-106 387.1 220 81.4
Glyma.16G032800 Glycine max HOM05D004399 ORTHO05D005303 1.6e-105 386.3 221 83.3
BcaB07g30287 Brassica carinata HOM05D004399 ORTHO05D005303 2.1e-105 386.0 220 80.9
Medtr7g095060 Medicago truncatula HOM05D004399 ORTHO05D005303 2.1e-105 386.0 224 80.4
AL5G13460 Arabidopsis lyrata HOM05D004399 ORTHO05D005303 2.7e-105 385.6 220 80.9
Glyma.07G066700 Glycine max HOM05D004399 ORTHO05D005303 3.5e-105 385.2 224 81.7
HanXRQChr08g0211681 Helianthus annuus HOM05D004399 ORTHO05D005303 3.5e-105 385.2 221 80.5
Hma1.2p1_0566F.1_g179870 Hydrangea macrophylla HOM05D004399 ORTHO05D005303 6.0e-105 384.4 221 80.5
Medtr4g094998 Medicago truncatula HOM05D004399 ORTHO05D005303 7.8e-105 384.0 224 80.4
THA.LOC104805201 Tarenaya hassleriana HOM05D004399 ORTHO05D005303 1.0e-104 383.6 224 79.0
Atru.chr11.1611 Acer truncatum HOM05D004399 ORTHO05D005303 1.7e-104 382.9 225 80.4
Rhsim09G0126300 Rhododendron simsii HOM05D004399 ORTHO05D005303 1.7e-104 382.9 237 77.6
Lsat_1_v5_gn_8_46460 Lactuca sativa HOM05D004399 ORTHO05D005303 2.3e-104 382.5 216 81.5
MBI14_g37191_MAGBIO Magnolia biondii HOM05D004399 ORTHO05D005303 2.3e-104 382.5 221 80.1
CARHR146010 Cardamine hirsuta HOM05D004399 ORTHO05D005303 3.0e-104 382.1 220 80.9
Aqoxy4G03091 Aquilegia oxysepala HOM05D004399 ORTHO05D005303 8.6e-104 380.6 215 83.3
MSTRG.7738 Avicennia marina HOM05D004399 ORTHO05D005303 8.6e-104 380.6 222 80.2
DCAR_026680 Daucus carota HOM05D004399 ORTHO05D005303 8.6e-104 380.6 221 82.4
Oeu031535.3 Olea europaea HOM05D004399 ORTHO05D005303 8.6e-104 380.6 251 72.9
Os04g0674200 Oryza sativa ssp. japonica HOM05D004399 ORTHO05D005303 8.6e-104 380.6 223 78.9
BcaC03g17230 Brassica carinata HOM05D004399 ORTHO05D005303 1.1e-103 380.2 220 80.0
BolC2t11249H Brassica oleracea HOM05D004399 ORTHO05D005303 1.1e-103 380.2 220 80.0
A02p33520 Brassica napus HOM05D004399 ORTHO05D005303 1.5e-103 379.8 220 79.5
SalBow4G1206 Salvia bowleyana HOM05D004399 ORTHO05D005303 1.5e-103 379.8 224 78.1
PSO478G0010 Papaver somniferum HOM05D004399 ORTHO05D005303 2.5e-103 379.0 225 80.0
Zm00001eb433530 Zea mays HOM05D004399 ORTHO05D005303 3.3e-103 378.6 223 79.4
Os05g0188800 Oryza sativa ssp. japonica HOM05D004399 ORTHO05D005303 7.3e-103 377.5 223 78.5
Nitab4.5_0007061g0010 Nicotiana tabacum HOM05D004399 ORTHO05D005303 2.1e-102 375.9 225 77.8
TPR.G29232 Trifolium pratense HOM05D004399 ORTHO05D005303 3.1e-101 372.1 224 80.4
Nitab4.5_0000231g0090 Nicotiana tabacum HOM05D004399 ORTHO05D005303 5.2e-101 371.3 245 72.2
CDE02G0376 Ceratophyllum demersum HOM05D004399 ORTHO05D005303 7.6e-100 367.5 223 77.1
SalBow2G2941 Salvia bowleyana HOM05D004399 ORTHO05D005303 6.4e-99 364.4 279 64.9
CDE04G3031 Ceratophyllum demersum HOM05D004399 ORTHO05D005303 1.2e-97 360.1 229 74.7
C02p51640 Brassica napus HOM05D004399 ORTHO05D005303 1.9e-95 352.8 203 81.3
SEGI_29941 Sequoiadendron giganteum HOM05D004399 ORTHO05D005303 1.3e-94 350.1 219 70.8
AUR62019674 Chenopodium quinoa HOM05D004399 ORTHO05D005303 6.9e-93 344.4 229 72.1
AagrBONN_evm.TU.Sc2ySwM_368.1886 Anthoceros agrestis HOM05D004399 ORTHO05D005303 5.1e-88 328.2 221 68.3
Mapoly0124s0026 Marchantia polymorpha HOM05D004399 ORTHO05D005303 4.0e-85 318.5 222 66.2
Pp3c2_220 Physcomitrium patens HOM05D004399 ORTHO05D005303 2.9e-83 312.4 217 65.0
SMO196G0238 Selaginella moellendorffii HOM05D004399 ORTHO05D005303 1.6e-81 306.6 218 65.1
Sed0017877 Sechium edule HOM05D004399 ORTHO05D005303 6.0e-81 304.7 169 84.0
MD13G1061300 Malus domestica HOM05D004399 ORTHO05D005303 1.5e-76 290.0 164 84.1
GSVIVG01000552001 Vitis vinifera HOM05D004399 ORTHO05D005303 2.5e-74 282.7 161 82.6
SalBow4G2688 Salvia bowleyana HOM05D004399 ORTHO05D005303 6.2e-70 268.1 153 79.1
ATR1120G108 Amborella trichopoda HOM05D004399 ORTHO05D005303 8.2e-70 267.7 176 70.5
CBR_g38753 Chara braunii HOM05D004399 ORTHO05D001303 9.0e-69 264.2 215 57.7
TPR.G35678 Trifolium pratense HOM05D004399 ORTHO05D005303 1.0e-64 250.8 131 84.7
Cre03.g154850 Chlamydomonas reinhardtii HOM05D004399 ORTHO05D005303 3.1e-61 239.2 218 53.7
SalBow4G1336 Salvia bowleyana HOM05D004399 ORTHO05D005303 4.5e-60 235.3 163 68.1
PRCOL_00001738 Prasinoderma coloniale HOM05D004399 ORTHO05D005303 2.1e-57 226.5 209 54.5
HanXRQChr10g0298331 Helianthus annuus HOM05D004399 ORTHO05D005303 5.1e-56 221.9 132 75.8
MCO10G350 Micromonas commoda HOM05D004399 ORTHO05D005303 2.9e-51 206.1 213 46.5
vmacro20929 Vaccinium macrocarpon HOM05D004399 ORTHO05D005303 8.5e-51 204.5 148 72.3
unitig_8.g3180 Utricularia gibba HOM05D004399 ORTHO05D005303 5.5e-50 201.8 111 85.6
Phvul.007G165400 Phaseolus vulgaris HOM05D004399 ORTHO05D005303 7.2e-50 201.4 115 77.4
Glyma.02G119500 Glycine max HOM05D004399 ORTHO05D005303 2.1e-49 199.9 112 77.7
SMO187G0002 Selaginella moellendorffii HOM05D004399 ORTHO05D005303 3.0e-40 169.5 130 58.5
Carub.0005s2415 Capsella rubella HOM05D004399 ORTHO05D005303 2.6e-39 166.4 112 70.5
MBI14_g45258_MAGBIO Magnolia biondii HOM05D004399 ORTHO05D005303 8.2e-38 161.4 85 81.2
HanXRQChr13g0414251 Helianthus annuus HOM05D004399 ORTHO05D005303 1.5e-31 140.6 97 76.3
Cfa024149 Carpinus fangiana HOM05D004399 ORTHO05D005303 2.0e-31 140.2 218 35.3
BcaB07g30659 Brassica carinata HOM05D004399 ORTHO05D005303 2.9e-27 126.3 134 47.8
FAN04G2106 Fragaria x ananassa HOM05D004399 ORTHO05D005303 1.8e-24 117.1 75 74.7
Phvul.007G165450 Phaseolus vulgaris HOM05D004399 ORTHO05D005303 5.2e-24 115.5 78 76.9
SalBow4G1060 Salvia bowleyana HOM05D004399 ORTHO05D005303 6.8e-24 115.2 66 77.3
TPR.G30910 Trifolium pratense HOM05D004399 ORTHO05D005303 6.8e-24 115.2 61 86.9
Actinidia12918 Actinidia chinensis HOM05D004399 ORTHO05D005303 2.0e-23 113.6 83 61.4
SalBow4G1755 Salvia bowleyana HOM05D004399 ORTHO05D005303 1.4e-21 107.5 60 70.0
RcHm_v2.0_Chr7g0182561 Rosa chinensis HOM05D004399 ORTHO05D005303 7.7e-20 101.7 61 80.3
SalBow4G1426 Salvia bowleyana HOM05D000195 ORTHO05D000377 2.3e-19 100.1 61 82.0
HanXRQChr01g0013031 Helianthus annuus HOM05D004399 ORTHO05D005303 1.5e-18 97.4 54 81.5
ATR1120G192 Amborella trichopoda HOM05D004399 ORTHO05D005303 4.3e-18 95.9 64 75.0
TPR.G35682 Trifolium pratense HOM05D004399 ORTHO05D005303 1.2e-17 94.4 65 75.4
Nn4g23036 Nelumbo nucifera HOM05D004399 ORTHO05D005303 2.1e-17 93.6 64 71.9
FAN08G1770 Fragaria x ananassa HOM05D004399 ORTHO05D005303 8.9e-16 88.2 128 45.3
HPP92_015023 Vanilla planifolia HOM05D000240 ORTHO05D001153 2.0e-15 87.0 100 48.0
Glyma.07G066400 Glycine max HOM05D004399 ORTHO05D005303 4.9e-14 82.4 54 79.6
SEGI_28424 Sequoiadendron giganteum HOM05D004399 ORTHO05D005303 1.7e-11 73.9 50 70.0
A09p24540 Brassica napus HOM05D004399 ORTHO05D005303 1.8e-08 63.9 39 71.8
DCAR_028902 Daucus carota HOM05D004399 ORTHO05D175529 2.0e-07 60.5 43 74.4
SalBow4G0663 Salvia bowleyana HOM05D000195 ORTHO05D000377 4.4e-07 59.3 35 80.0


User provided reference genes

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