Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG08G010240 Citrullus lanatus HOM05D002318 ORTHO05D008744 6.5e-213 743.8 380 100.0
MELO3C011434.2 Cucumis melo HOM05D002318 ORTHO05D008744 8.3e-168 594.0 382 82.7
CsaV3_6G032440 Cucumis sativus L. HOM05D002318 ORTHO05D008744 1.9e-164 582.8 382 81.9
QL03p070830 Quercus lobata HOM05D002318 ORTHO05D008744 3.7e-123 445.7 374 63.9
Cfa008908 Carpinus fangiana HOM05D002318 ORTHO05D008744 1.8e-122 443.4 380 63.4
Haze_11934 Corylus avellana HOM05D002318 ORTHO05D008744 2.4e-122 443.0 379 63.1
Thecc.02G336500 Theobroma cacao HOM05D002318 ORTHO05D008744 1.3e-120 437.2 379 61.7
Sed0004708 Sechium edule HOM05D002318 ORTHO05D008744 2.2e-120 436.4 312 77.2
Gorai.013G091200 Gossypium raimondii HOM05D002318 ORTHO05D008744 3.8e-120 435.6 380 61.6
TAR622G0636 Trochodendron aralioides HOM05D002318 ORTHO05D004713 9.3e-119 431.0 375 61.3
Gohir.A13G079900 Gossypium hirsutum HOM05D002318 ORTHO05D008744 2.7e-118 429.5 380 60.8
Lj2g0021077 Lotus japonicus HOM05D002318 ORTHO05D008744 3.5e-118 429.1 377 60.5
COL.COLO4_27936 Corchorus olitorius HOM05D002318 ORTHO05D008744 2.3e-117 426.4 382 61.0
CiPaw.05G128000 Carya illinoinensis HOM05D002318 ORTHO05D008744 3.9e-117 425.6 382 61.5
Atru.chr11.1690 Acer truncatum HOM05D002318 ORTHO05D008744 9.7e-116 421.0 379 61.5
Duzib268G0798 Durio zibethinus HOM05D002318 ORTHO05D008744 9.7e-116 421.0 377 59.9
MD16G1064900 Malus domestica HOM05D002318 ORTHO05D008744 2.2e-115 419.9 374 60.7
Cpa.g.sc1.87 Carica papaya HOM05D002318 ORTHO05D008744 3.7e-115 419.1 377 63.1
PGR119G0925 Punica granatum HOM05D002318 ORTHO05D008744 3.7e-115 419.1 369 59.3
Phvul.002G069400 Phaseolus vulgaris HOM05D002318 ORTHO05D008744 4.1e-114 415.6 376 59.3
VMungo1215G2584 Vigna mungo HOM05D002318 ORTHO05D008744 4.1e-114 415.6 376 60.4
RcHm_v2.0_Chr4g0438871 Rosa chinensis HOM05D002318 ORTHO05D008744 1.2e-113 414.1 373 60.3
Lalb_Chr17g0340981 Lupinus albus HOM05D002318 ORTHO05D008744 1.0e-112 411.0 366 59.8
TPR.G22412 Trifolium pratense HOM05D002318 ORTHO05D008744 1.7e-112 410.2 380 57.6
GSVIVG01012177001 Vitis vinifera HOM05D002318 ORTHO05D008744 2.9e-112 409.5 375 60.0
Aqoxy3G03551 Aquilegia oxysepala HOM05D002318 ORTHO05D008744 3.8e-112 409.1 382 59.2
Psat2g128360 Pisum sativum HOM05D002318 ORTHO05D008744 5.0e-112 408.7 373 58.7
Ca_04907_v3 Cicer arietinum L. HOM05D002318 ORTHO05D008744 6.5e-112 408.3 371 58.5
Potri.010G161600 Populus trichocarpa HOM05D002318 ORTHO05D008744 1.9e-111 406.8 381 58.5
FAN17G2010 Fragaria x ananassa HOM05D002318 ORTHO05D008744 3.2e-111 406.0 382 59.4
THA.LOC104805183 Tarenaya hassleriana HOM05D002318 ORTHO05D008744 4.2e-111 405.6 379 59.4
CANSAT54G0184 Cannabis sativa HOM05D002318 ORTHO05D008744 7.2e-111 404.8 381 59.8
Sabra10G0122900 Salix brachista HOM05D002318 ORTHO05D008744 7.2e-111 404.8 381 58.5
TWI75G0802 Tripterygium wilfordii HOM05D002318 ORTHO05D008744 7.2e-111 404.8 378 60.1
Glyma.02G113500 Glycine max HOM05D002318 ORTHO05D008744 9.4e-111 404.4 373 58.2
FAN07G2980 Fragaria x ananassa HOM05D002318 ORTHO05D004713 2.7e-110 402.9 380 59.2
Ciclev10032054m.g Citrus clementina HOM05D002318 ORTHO05D008744 7.9e-110 401.4 374 59.9
Eucgr.G02464 Eucalyptus grandis HOM05D002318 ORTHO05D008744 1.4e-109 400.6 375 57.3
CARHR145730 Cardamine hirsuta HOM05D002318 ORTHO05D008744 2.3e-109 399.8 378 59.8
AUR62043182 Chenopodium quinoa HOM05D002318 ORTHO05D008744 2.3e-109 399.8 384 57.3
Sc11g0002270 Simmondsia chinensis HOM05D002318 ORTHO05D008744 2.3e-109 399.8 379 57.0
Gohir.D13G079700 Gossypium hirsutum HOM05D002318 ORTHO05D008744 3.9e-109 399.1 380 58.2
PGSC0003DMG401028329 Solanum tuberosum HOM05D002318 ORTHO05D008744 5.1e-109 398.7 380 57.4
PGSC0003DMG402022110 Solanum tuberosum HOM05D002318 ORTHO05D008744 5.1e-109 398.7 380 57.4
FAN22G0051 Fragaria x ananassa HOM05D002318 ORTHO05D008744 3.3e-108 396.0 380 58.7
Sopen05g007450 Solanum pennellii HOM05D002318 ORTHO05D008744 4.3e-108 395.6 355 59.4
Hund05860 Selenicereus undatus HOM05D002318 ORTHO05D008744 9.7e-108 394.4 376 57.4
Sp2g14310 Schrenkiella parvula HOM05D002318 ORTHO05D008744 1.7e-107 393.7 373 59.0
arahy.Tifrunner.gnm1.ann1.T5ZGHX Arachis hypogaea HOM05D002318 ORTHO05D008744 2.8e-107 392.9 367 58.0
Lsat_1_v5_gn_8_48101 Lactuca sativa HOM05D002318 ORTHO05D004713 4.8e-107 392.1 374 54.5
Aa31LG2G7170 Aethionema arabicum HOM05D002318 ORTHO05D008744 1.1e-106 391.0 378 58.5
AT2G03390 Arabidopsis thaliana HOM05D002318 ORTHO05D008744 1.4e-106 390.6 373 59.0
arahy.Tifrunner.gnm1.ann1.T0481B Arachis hypogaea HOM05D002318 ORTHO05D008744 1.4e-106 390.6 367 57.8
AL5G13100 Arabidopsis lyrata HOM05D002318 ORTHO05D008744 1.8e-106 390.2 374 58.6
AL5G13140 Arabidopsis lyrata HOM05D002318 ORTHO05D008744 1.8e-106 390.2 374 58.6
Nitab4.5_0000334g0260 Nicotiana tabacum HOM05D002318 ORTHO05D008744 3.1e-106 389.4 351 59.5
Thhalv10004578m.g Eutrema salsugineum HOM05D002318 ORTHO05D008744 4.1e-106 389.0 373 58.4
Carub.0005s0236 Capsella rubella HOM05D002318 ORTHO05D008744 5.3e-106 388.7 375 57.9
CAN.G1340.13 Capsicum annuum HOM05D002318 ORTHO05D008744 6.9e-106 388.3 375 56.0
MBI16_g06774_MAGBIO Magnolia biondii HOM05D002318 ORTHO05D008744 6.9e-106 388.3 371 59.3
BcaC06g34000 Brassica carinata HOM05D002318 ORTHO05D008744 9.1e-106 387.9 373 59.2
HanXRQChr12g0362851 Helianthus annuus HOM05D002318 ORTHO05D008744 9.1e-106 387.9 377 56.5
Peaxi162Scf00314g00023 Petunia axillaris HOM05D002318 ORTHO05D008744 1.2e-105 387.5 406 54.9
Solyc05g012620.4 Solanum lycopersicum HOM05D002318 ORTHO05D008744 2.0e-105 386.7 317 63.4
ATR0111G011 Amborella trichopoda HOM05D002318 ORTHO05D008744 1.3e-104 384.0 340 62.1
Oeu021096.1 Olea europaea HOM05D002318 ORTHO05D008744 3.8e-104 382.5 381 55.6
Cc11_g12380 Coffea canephora HOM05D002318 ORTHO05D008744 6.5e-104 381.7 363 55.9
BcaC06g31184 Brassica carinata HOM05D002318 ORTHO05D008744 1.1e-103 380.9 382 58.6
Ah.13g073950 Amaranthus hybridus HOM05D002318 ORTHO05D008744 1.4e-103 380.6 397 52.4
C07p33850 Brassica napus HOM05D002318 ORTHO05D008744 2.5e-103 379.8 375 58.9
DCAR_027449 Daucus carota HOM05D002318 ORTHO05D008744 2.5e-103 379.8 317 62.1
Medtr5g043480 Medicago truncatula HOM05D002318 ORTHO05D008744 2.5e-103 379.8 380 55.3
BolC7t43899H Brassica oleracea HOM05D002318 ORTHO05D008744 5.5e-103 378.6 375 58.9
BraA06t27203Z Brassica rapa HOM05D002318 ORTHO05D008744 2.1e-102 376.7 375 58.7
FAN12G0082 Fragaria x ananassa HOM05D002318 ORTHO05D008744 2.1e-102 376.7 380 56.8
EL10As3g23350 Beta vulgaris HOM05D002318 ORTHO05D008744 8.8e-101 371.3 411 51.1
CSS0013540 Camellia sinensis var. sinensis HOM05D002318 ORTHO05D008744 2.4e-98 363.2 307 63.5
Migut.L01223 Erythranthe guttata HOM05D002318 ORTHO05D008744 9.1e-98 361.3 357 54.1
Actinidia19922 Actinidia chinensis HOM05D002318 ORTHO05D008744 2.0e-97 360.1 380 51.8
Rhsim12G0076700 Rhododendron simsii HOM05D002318 ORTHO05D008744 2.6e-97 359.8 392 52.8
vmacro01330 Vaccinium macrocarpon HOM05D002318 ORTHO05D008744 5.9e-97 358.6 403 50.6
Prupe.1G282000 Prunus persica HOM05D002318 ORTHO05D008744 1.3e-96 357.5 374 54.5
AUR62038089 Chenopodium quinoa HOM05D002318 ORTHO05D008744 8.0e-94 348.2 384 51.8
ECA233G4874 Erigeron canadensis HOM05D002318 ORTHO05D008744 8.0e-94 348.2 344 54.9
CDE04G0061 Ceratophyllum demersum HOM05D002318 ORTHO05D008744 3.0e-93 346.3 316 57.3
Os08g0172200 Oryza sativa ssp. japonica HOM05D002318 ORTHO05D008744 1.7e-91 340.5 315 59.0
SalBow2G2755 Salvia bowleyana HOM05D002318 ORTHO05D008744 3.5e-89 332.8 381 48.0
Manes.01G030400 Manihot esculenta HOM05D002318 ORTHO05D008744 4.5e-89 332.4 331 58.3
Dinv34114 Davidia involucrata HOM05D002318 ORTHO05D008744 1.9e-87 327.0 307 58.3
Hma1.2p1_0354F.1_g133650 Hydrangea macrophylla HOM05D002318 ORTHO05D008744 9.4e-87 324.7 324 53.4
Nn3g17371 Nelumbo nucifera HOM05D002318 ORTHO05D008744 1.2e-86 324.3 323 54.5
Lj6C782T15 Lonicera japonica HOM05D002318 ORTHO05D008744 1.4e-85 320.9 370 50.8
SEGI_16280 Sequoiadendron giganteum HOM05D002318 ORTHO05D008744 7.5e-84 315.1 340 52.1
FvH4_4g30500 Fragaria vesca HOM05D002318 ORTHO05D008744 2.8e-83 313.2 307 57.7
unitig_22.g6902 Utricularia gibba HOM05D002318 ORTHO05D008744 2.8e-83 313.2 330 53.6
Mapoly0001s0530 Marchantia polymorpha HOM05D002318 ORTHO05D008744 1.2e-78 297.7 298 51.3
A06p43150 Brassica napus HOM05D002318 ORTHO05D008744 3.0e-77 293.1 345 53.6
Pp3c7_3960 Physcomitrium patens HOM05D002318 ORTHO05D008744 2.7e-73 280.0 293 49.5
SGA_v2.0_scaffold16G07752 Striga asiatica HOM05D002318 ORTHO05D008744 4.5e-73 279.3 337 46.6
PSO591G0040 Papaver somniferum HOM05D002318 ORTHO05D008744 4.0e-69 266.2 274 52.9
AagrBONN_evm.TU.Sc2ySwM_117.1985 Anthoceros agrestis HOM05D002318 ORTHO05D008744 2.6e-68 263.5 305 46.2
Dinv16705 Davidia involucrata HOM05D002318 ORTHO05D004713 3.7e-59 233.0 261 54.4
Actinidia31948 Actinidia chinensis HOM05D002318 ORTHO05D008744 1.1e-58 231.5 309 43.4
CBR_g27967 Chara braunii HOM05D002318 ORTHO05D008744 2.7e-57 226.9 286 45.1
FAN16G1553 Fragaria x ananassa HOM05D002318 ORTHO05D008744 3.3e-55 219.9 199 61.3
SMO115G0105 Selaginella moellendorffii HOM05D002318 ORTHO05D008744 4.7e-54 216.1 255 46.3
CSS0007300 Camellia sinensis var. sinensis HOM05D002318 ORTHO05D008744 8.0e-54 215.3 251 50.6
arahy.Tifrunner.gnm1.ann1.1U2S5X Arachis hypogaea HOM05D002318 ORTHO05D008744 1.2e-52 211.5 251 49.8
arahy.Tifrunner.gnm1.ann1.TF58FW Arachis hypogaea HOM05D002318 ORTHO05D008744 3.4e-52 209.9 251 49.4
Glyma.01G055000 Glycine max HOM05D002318 ORTHO05D008744 7.5e-52 208.8 228 53.1
Zm00001eb370310 Zea mays HOM05D002318 ORTHO05D008744 7.5e-44 182.2 185 54.6
CSS0032009 Camellia sinensis var. sinensis HOM05D002318 ORTHO05D008744 9.9e-44 181.8 184 54.9
Cre02.g113700 Chlamydomonas reinhardtii HOM05D002318 ORTHO05D008744 2.4e-34 150.6 322 35.1
PRCOL_00000845 Prasinoderma coloniale HOM05D002318 ORTHO05D008744 4.6e-33 146.4 290 32.8
Aa31sc734G30 Aethionema arabicum HOM05D002318 ORTHO05D008744 1.7e-32 144.4 185 49.7
Glyma.01G054950 Glycine max HOM05D002318 ORTHO05D008744 3.9e-16 90.1 67 68.7
CBR_g50304 Chara braunii HOM05D020303 ORTHO05D021299 1.9e-15 87.8 166 35.5
Os01g0764500 Oryza sativa ssp. japonica HOM05D002318 ORTHO05D008744 6.2e-14 82.8 80 53.8
arahy.Tifrunner.gnm1.ann1.QV9UMR Arachis hypogaea HOM05D000001 ORTHO05D000003 1.2e-09 68.6 37 81.1
Lsat_1_v5_gn_5_151580 Lactuca sativa HOM05D002318 ORTHO05D008744 1.6e-06 58.2 90 40.0


User provided reference genes

Program Settings