Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG08G010140 Citrullus lanatus HOM05D005946 ORTHO05D007340 1.5e-32 142.1 68 100.0
Sabra08G0134600 Salix brachista HOM05D005946 ORTHO05D007340 3.2e-14 81.3 47 76.6
MELO3C030289.2 Cucumis melo HOM05D005946 ORTHO05D007340 2.1e-13 78.6 37 97.3
CsaV3_6G032330 Cucumis sativus L. HOM05D003413 ORTHO05D004197 2.1e-13 78.6 37 97.3
SHI17703 Sapria himalayana HOM05D005946 ORTHO05D007340 4.7e-13 77.4 37 94.6
Potri.008G176801 Populus trichocarpa HOM05D005946 ORTHO05D007340 8.0e-13 76.6 37 91.9
Potri.010G058300 Populus trichocarpa HOM05D005946 ORTHO05D007340 8.0e-13 76.6 37 91.9
PGR004G0564 Punica granatum HOM05D005946 ORTHO05D007340 1.4e-12 75.9 37 91.9
Sabra10G0047000 Salix brachista HOM05D005946 ORTHO05D007340 1.4e-12 75.9 36 94.4
Sed0027475 Sechium edule HOM05D005946 ORTHO05D007340 1.8e-12 75.5 37 94.6
Cc00_g13530 Coffea canephora HOM05D005946 ORTHO05D007340 2.3e-12 75.1 37 89.2
Nitab4.5_0001841g0040 Nicotiana tabacum HOM05D005946 ORTHO05D007340 2.3e-12 75.1 37 89.2
Solyc06g068780.3 Solanum lycopersicum HOM05D005946 ORTHO05D007340 2.3e-12 75.1 37 89.2
Sopen06g026060 Solanum pennellii HOM05D005946 ORTHO05D007340 2.3e-12 75.1 37 89.2
PGSC0003DMG400025576 Solanum tuberosum HOM05D005946 ORTHO05D007340 2.3e-12 75.1 37 89.2
Psat5g094720 Pisum sativum HOM05D005946 ORTHO05D007340 3.0e-12 74.7 43 83.7
TWI14G1045 Tripterygium wilfordii HOM05D005946 ORTHO05D007340 3.0e-12 74.7 37 89.2
TWI36G1309 Tripterygium wilfordii HOM05D005946 ORTHO05D007340 3.0e-12 74.7 37 89.2
TWI36G1530 Tripterygium wilfordii HOM05D005946 ORTHO05D007340 3.0e-12 74.7 37 89.2
Manes.12G013300 Manihot esculenta HOM05D005946 ORTHO05D007340 4.0e-12 74.3 37 89.2
Manes.13G017850 Manihot esculenta HOM05D005946 ORTHO05D007340 4.0e-12 74.3 37 89.2
Nitab4.5_0008858g0060 Nicotiana tabacum HOM05D005946 ORTHO05D007340 6.8e-12 73.6 37 86.5
EL10Ac6g13474 Beta vulgaris HOM05D005946 ORTHO05D007340 8.8e-12 73.2 37 86.5
CAN.G1089.18 Capsicum annuum HOM05D005946 ORTHO05D007340 8.8e-12 73.2 37 86.5
arahy.Tifrunner.gnm1.ann1.K0QS2G Arachis hypogaea HOM05D005946 ORTHO05D007340 1.2e-11 72.8 67 56.7
arahy.Tifrunner.gnm1.ann1.XCNA8V Arachis hypogaea HOM05D005946 ORTHO05D007340 1.5e-11 72.4 43 76.7
Eucgr.B03471 Eucalyptus grandis HOM05D005946 ORTHO05D007340 1.5e-11 72.4 37 89.2
CAN.G843.5 Capsicum annuum HOM05D005946 ORTHO05D007340 2.0e-11 72.0 37 86.5
Peaxi162Scf00314g00635 Petunia axillaris HOM05D005946 ORTHO05D007340 2.0e-11 72.0 37 86.5
Solyc03g118140.3 Solanum lycopersicum HOM05D005946 ORTHO05D007340 2.0e-11 72.0 37 86.5
Sopen03g037060 Solanum pennellii HOM05D005946 ORTHO05D007340 2.0e-11 72.0 37 86.5
CiPaw.06G100600 Carya illinoinensis HOM05D005946 ORTHO05D007340 2.6e-11 71.6 37 83.8
Duzib251G0400 Durio zibethinus HOM05D005946 ORTHO05D007340 2.6e-11 71.6 37 86.5
Migut.B01726 Erythranthe guttata HOM05D005946 ORTHO05D007340 2.6e-11 71.6 37 83.8
Gohir.A03G127300 Gossypium hirsutum HOM05D005946 ORTHO05D007340 2.6e-11 71.6 37 86.5
Gorai.005G169000 Gossypium raimondii HOM05D005946 ORTHO05D007340 2.6e-11 71.6 37 86.5
Thecc.02G276900 Theobroma cacao HOM05D005946 ORTHO05D007340 2.6e-11 71.6 37 86.5
Peaxi162Scf00207g00238 Petunia axillaris HOM05D005946 ORTHO05D007340 4.4e-11 70.9 36 86.1
Ciclev10033263m.g Citrus clementina HOM05D005946 ORTHO05D007340 5.7e-11 70.5 37 83.8
Duzib248G1204 Durio zibethinus HOM05D005946 ORTHO05D007340 5.7e-11 70.5 37 83.8
CiPaw.05G112200 Carya illinoinensis HOM05D005946 ORTHO05D007340 7.5e-11 70.1 37 83.8
SalBow3G2240 Salvia bowleyana HOM05D005946 ORTHO05D007340 7.5e-11 70.1 37 83.8
TPR.G21803 Trifolium pratense HOM05D005946 ORTHO05D007340 1.3e-10 69.3 37 86.5
arahy.Tifrunner.gnm1.ann1.55451G Arachis hypogaea HOM05D005946 ORTHO05D007340 1.7e-10 68.9 37 83.8
Dinv14819 Davidia involucrata HOM05D005946 ORTHO05D007340 1.7e-10 68.9 37 81.1
MSTRG.28215 Avicennia marina HOM05D005946 ORTHO05D007340 2.2e-10 68.6 37 81.1
Migut.N01429 Erythranthe guttata HOM05D005946 ORTHO05D007340 2.2e-10 68.6 37 81.1
Gohir.D02G150700 Gossypium hirsutum HOM05D005946 ORTHO05D007340 2.2e-10 68.6 37 83.8
SalBow5G0243 Salvia bowleyana HOM05D005946 ORTHO05D007340 2.2e-10 68.6 37 81.1
SalBow5G1014 Salvia bowleyana HOM05D005946 ORTHO05D007340 2.2e-10 68.6 37 81.1
SGA_v2.0_scaffold11G05656 Striga asiatica HOM05D000612 ORTHO05D000461 2.2e-10 68.6 37 81.1
TPR.G37229 Trifolium pratense HOM05D005946 ORTHO05D007340 2.8e-10 68.2 37 83.8
Gorai.002G192200 Gossypium raimondii HOM05D005946 ORTHO05D007340 3.7e-10 67.8 37 81.1
Medtr3g085600 Medicago truncatula HOM05D005946 ORTHO05D007340 3.7e-10 67.8 37 83.8
Rhsim12G0028200 Rhododendron simsii HOM05D005946 ORTHO05D007340 3.7e-10 67.8 37 78.4
Aa31LG10G8610 Aethionema arabicum HOM05D005946 ORTHO05D007340 6.3e-10 67.0 37 81.1
AL6G31720 Arabidopsis lyrata HOM05D005946 ORTHO05D007340 6.3e-10 67.0 37 81.1
AT5G20165 Arabidopsis thaliana HOM05D005946 ORTHO05D007340 6.3e-10 67.0 37 81.1
A03p09890 Brassica napus HOM05D005946 ORTHO05D007340 6.3e-10 67.0 37 81.1
A10p19740 Brassica napus HOM05D005946 ORTHO05D007340 6.3e-10 67.0 37 81.1
C03p11470 Brassica napus HOM05D005946 ORTHO05D007340 6.3e-10 67.0 37 81.1
C09p56030 Brassica napus HOM05D005946 ORTHO05D007340 6.3e-10 67.0 37 81.1
BolC3t13619H Brassica oleracea HOM05D005946 ORTHO05D007340 6.3e-10 67.0 37 81.1
BolC9t58470H Brassica oleracea HOM05D005946 ORTHO05D007340 6.3e-10 67.0 37 81.1
BraA03t10302Z Brassica rapa HOM05D005946 ORTHO05D007340 6.3e-10 67.0 37 81.1
BraA10t44050Z Brassica rapa HOM05D005946 ORTHO05D007340 6.3e-10 67.0 37 81.1
Carub.0006s1856 Capsella rubella HOM05D005946 ORTHO05D007340 6.3e-10 67.0 37 81.1
CARHR192660 Cardamine hirsuta HOM05D005946 ORTHO05D007340 6.3e-10 67.0 37 81.1
Thhalv10015210m.g Eutrema salsugineum HOM05D005946 ORTHO05D007340 6.3e-10 67.0 37 81.1
Glyma.11G249100 Glycine max HOM05D005946 ORTHO05D007340 6.3e-10 67.0 37 81.1
Glyma.18G008200 Glycine max HOM05D005946 ORTHO05D007340 6.3e-10 67.0 37 81.1
Phvul.001G260400 Phaseolus vulgaris HOM05D005946 ORTHO05D007340 6.3e-10 67.0 37 81.1
Sp6g24240 Schrenkiella parvula HOM05D005946 ORTHO05D007340 6.3e-10 67.0 37 81.1
THA.LOC104799646 Tarenaya hassleriana HOM05D005946 ORTHO05D007340 6.3e-10 67.0 37 81.1
THA.LOC109116592 Tarenaya hassleriana HOM05D005946 ORTHO05D007340 6.3e-10 67.0 37 81.1
CDE10G0420 Ceratophyllum demersum HOM05D005946 ORTHO05D007340 8.3e-10 66.6 37 78.4
CDE10G0705 Ceratophyllum demersum HOM05D005946 ORTHO05D007340 8.3e-10 66.6 37 78.4
MBI07_g24770_MAGBIO Magnolia biondii HOM05D005946 ORTHO05D007340 8.3e-10 66.6 37 81.1
Nn3g18946 Nelumbo nucifera HOM05D005946 ORTHO05D007340 8.3e-10 66.6 37 81.1
PGR102G2803 Punica granatum HOM05D005946 ORTHO05D007340 1.4e-09 65.9 37 78.4
CSS0024427 Camellia sinensis var. sinensis HOM05D005946 ORTHO05D007340 1.8e-09 65.5 37 75.7
CANSAT21G2474 Cannabis sativa HOM05D005946 ORTHO05D007340 1.8e-09 65.5 37 78.4
HanXRQChr07g0190741 Helianthus annuus HOM05D005946 ORTHO05D007340 1.8e-09 65.5 37 78.4
Lsat_1_v5_gn_6_8840 Lactuca sativa HOM05D005946 ORTHO05D007340 1.8e-09 65.5 37 78.4
unitig_747.g21988 Utricularia gibba HOM05D005946 ORTHO05D007340 2.4e-09 65.1 37 78.4
Actinidia27305 Actinidia chinensis HOM05D005946 ORTHO05D007340 3.1e-09 64.7 37 75.7
Rhsim07G0080600 Rhododendron simsii HOM05D005946 ORTHO05D007340 3.1e-09 64.7 37 75.7
ECA246G0405 Erigeron canadensis HOM05D005946 ORTHO05D007340 5.4e-09 63.9 37 75.7
HanXRQChr17g0534681 Helianthus annuus HOM05D005946 ORTHO05D007340 5.4e-09 63.9 37 75.7
Lsat_1_v5_gn_3_12801 Lactuca sativa HOM05D005946 ORTHO05D007340 5.4e-09 63.9 37 75.7
PSO063G0123 Papaver somniferum HOM05D005946 ORTHO05D007340 5.4e-09 63.9 37 75.7
PSO170G6765 Papaver somniferum HOM05D005946 ORTHO05D007340 5.4e-09 63.9 37 75.7
SEGI_28367 Sequoiadendron giganteum HOM05D005946 ORTHO05D007340 5.4e-09 63.9 37 75.7
TAR374G1140 Trochodendron aralioides HOM05D005946 ORTHO05D007340 5.4e-09 63.9 37 75.7
Lj4g0023384 Lotus japonicus HOM05D005946 ORTHO05D007340 7.0e-09 63.5 37 75.7
MD14G1133000 Malus domestica HOM05D005946 ORTHO05D007340 7.0e-09 63.5 37 75.7
vmacro01071 Vaccinium macrocarpon HOM05D005946 ORTHO05D007340 7.0e-09 63.5 37 73.0
vmacro14062 Vaccinium macrocarpon HOM05D005946 ORTHO05D007340 7.0e-09 63.5 37 73.0
Zm00001eb237180 Zea mays HOM05D005946 ORTHO05D007340 9.1e-09 63.2 37 73.0
Os02g0299600 Oryza sativa ssp. japonica HOM05D005946 ORTHO05D007340 1.2e-08 62.8 37 73.0
Mapoly0008s0042 Marchantia polymorpha HOM05D005946 ORTHO05D007340 1.6e-08 62.4 37 70.3
Prupe.5G124600 Prunus persica HOM05D005946 ORTHO05D007340 1.6e-08 62.4 37 73.0
FvH4_5g11580 Fragaria vesca HOM05D005946 ORTHO05D007340 2.0e-08 62.0 37 73.0
Actinidia22739 Actinidia chinensis HOM05D005946 ORTHO05D007340 2.7e-08 61.6 37 73.0
FAN04G2943 Fragaria x ananassa HOM05D005946 ORTHO05D007340 3.5e-08 61.2 36 75.0
FAN08G3074 Fragaria x ananassa HOM05D005946 ORTHO05D007340 3.5e-08 61.2 36 75.0
FAN18G3129 Fragaria x ananassa HOM05D005946 ORTHO05D007340 3.5e-08 61.2 36 75.0
Lalb_Chr05g0223941 Lupinus albus HOM05D005946 ORTHO05D007340 3.5e-08 61.2 37 73.0
Lalb_Chr09g0332191 Lupinus albus HOM05D005946 ORTHO05D007340 3.5e-08 61.2 37 73.0
MD06G1111800 Malus domestica HOM05D005946 ORTHO05D007340 3.5e-08 61.2 37 73.0
RcHm_v2.0_Chr7g0186171 Rosa chinensis HOM05D005946 ORTHO05D007340 3.5e-08 61.2 36 75.0
Os05g0251500 Oryza sativa ssp. japonica HOM05D005946 ORTHO05D007340 4.5e-08 60.8 37 73.0
Psat7g023880 Pisum sativum HOM05D005946 ORTHO05D007340 1.3e-07 59.3 37 70.3
unitig_0.g1509 Utricularia gibba HOM05D005946 ORTHO05D007340 2.3e-07 58.5 36 72.2
Sed0005468 Sechium edule HOM05D005946 ORTHO05D007340 5.0e-07 57.4 32 81.2
ATR0955G005 Amborella trichopoda HOM05D005946 ORTHO05D007340 6.6e-07 57.0 37 70.3
Pp3s128_20 Physcomitrium patens HOM05D005946 ORTHO05D007340 8.6e-07 56.6 37 67.6
AagrBONN_evm.TU.Sc2ySwM_228.3656 Anthoceros agrestis HOM05D005946 ORTHO05D007340 1.1e-06 56.2 37 62.2
RcHm_v2.0_Chr4g0430651 Rosa chinensis HOM05D005946 ORTHO05D007340 3.3e-06 54.7 37 62.2
Nitab4.5_0000976g0200 Nicotiana tabacum HOM05D005946 ORTHO05D007340 4.2e-06 54.3 37 64.9


User provided reference genes

Program Settings