Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG08G010070 Citrullus lanatus HOM05D007500 ORTHO05D009197 1.5e-69 266.2 141 100.0
MELO3C011458.2 Cucumis melo HOM05D007500 ORTHO05D009197 4.2e-64 248.1 141 93.6
CsaV3_6G032240 Cucumis sativus L. HOM05D007500 ORTHO05D009197 6.6e-62 240.7 137 93.4
Sed0012176 Sechium edule HOM05D007500 ORTHO05D009197 1.9e-56 222.6 141 83.0
Haze_12411 Corylus avellana HOM05D007500 ORTHO05D009197 1.5e-45 186.4 129 73.6
Cfa009364 Carpinus fangiana HOM05D007500 ORTHO05D009197 5.3e-43 177.9 129 72.1
CiPaw.05G110500 Carya illinoinensis HOM05D007500 ORTHO05D009197 3.4e-42 175.3 130 70.8
Gohir.A03G126600 Gossypium hirsutum HOM05D007500 ORTHO05D009197 7.6e-42 174.1 144 63.2
Duzib268G0307 Durio zibethinus HOM05D007500 ORTHO05D009197 1.0e-41 173.7 144 63.2
CANSAT01G0539 Cannabis sativa HOM05D007500 ORTHO05D009197 1.3e-41 173.3 138 67.4
Gohir.D02G150000 Gossypium hirsutum HOM05D007500 ORTHO05D009197 1.7e-41 172.9 144 63.2
Gorai.005G168300 Gossypium raimondii HOM05D007500 ORTHO05D009197 1.7e-41 172.9 144 63.2
PGR102G0196 Punica granatum HOM05D007500 ORTHO05D009197 2.5e-40 169.1 136 66.2
THA.LOC104814194 Tarenaya hassleriana HOM05D007500 ORTHO05D009197 4.2e-40 168.3 134 68.7
QL93p2010_0098 Quercus lobata HOM05D007500 ORTHO05D009197 7.1e-40 167.5 131 67.9
COL.COLO4_20391 Corchorus olitorius HOM05D007500 ORTHO05D009197 9.3e-40 167.2 144 61.1
Potri.001G055000 Populus trichocarpa HOM05D007500 ORTHO05D009197 1.2e-39 166.8 120 71.7
Atru.chr11.2314 Acer truncatum HOM05D007500 ORTHO05D009197 1.6e-39 166.4 141 61.0
Sabra01G0039500 Salix brachista HOM05D007500 ORTHO05D009197 2.7e-39 165.6 120 70.8
Cpa.g.sc43.48 Carica papaya HOM05D007500 ORTHO05D009197 3.5e-39 165.2 141 61.0
QL03p052860 Quercus lobata HOM05D007500 ORTHO05D009197 3.5e-39 165.2 131 67.2
QL03p053117 Quercus lobata HOM05D007500 ORTHO05D009197 3.5e-39 165.2 131 67.2
Ciclev10033679m.g Citrus clementina HOM05D007500 ORTHO05D009197 8.7e-38 160.6 139 62.6
FAN12G0274 Fragaria x ananassa HOM05D007500 ORTHO05D009197 8.7e-38 160.6 132 64.4
FvH4_4g23840 Fragaria vesca HOM05D007500 ORTHO05D009197 1.5e-37 159.8 132 63.6
FAN07G2442 Fragaria x ananassa HOM05D007500 ORTHO05D009197 1.5e-37 159.8 132 65.2
Dinv14836 Davidia involucrata HOM05D007500 ORTHO05D009197 1.9e-37 159.5 131 66.4
Thecc.02G209700 Theobroma cacao HOM05D007500 ORTHO05D009197 2.5e-37 159.1 129 63.6
TWI18G0612 Tripterygium wilfordii HOM05D007500 ORTHO05D009197 2.5e-37 159.1 138 60.9
FAN17G2194 Fragaria x ananassa HOM05D007500 ORTHO05D009197 4.3e-37 158.3 121 68.6
FAN22G1415 Fragaria x ananassa HOM05D007500 ORTHO05D009197 5.7e-37 157.9 121 68.6
Sc14g0009050 Simmondsia chinensis HOM05D007500 ORTHO05D009197 1.3e-36 156.8 140 60.7
Nn5g28851 Nelumbo nucifera HOM05D007500 ORTHO05D009197 1.6e-36 156.4 135 61.5
CSS0001813 Camellia sinensis var. sinensis HOM05D007500 ORTHO05D009197 2.1e-36 156.0 121 68.6
Ca_16464_v3 Cicer arietinum L. HOM05D007500 ORTHO05D009197 2.8e-36 155.6 129 67.4
arahy.Tifrunner.gnm1.ann1.Z93F9T Arachis hypogaea HOM05D007500 ORTHO05D009197 4.8e-36 154.8 126 65.1
Manes.12G012100 Manihot esculenta HOM05D007500 ORTHO05D009197 6.3e-36 154.5 138 60.1
Peaxi162Scf00128g00124 Petunia axillaris HOM05D007500 ORTHO05D009197 1.2e-34 150.2 125 63.2
Aqoxy6G00433 Aquilegia oxysepala HOM05D007500 ORTHO05D009197 1.5e-34 149.8 125 59.2
AT5G43250 Arabidopsis thaliana HOM05D007500 ORTHO05D009197 2.6e-34 149.1 139 65.5
Nitab4.5_0001404g0040 Nicotiana tabacum HOM05D007500 ORTHO05D009197 3.4e-34 148.7 122 62.3
PGSC0003DMG400029106 Solanum tuberosum HOM05D007500 ORTHO05D009197 4.5e-34 148.3 122 61.5
Solyc05g015330.1 Solanum lycopersicum HOM05D007500 ORTHO05D009197 7.6e-34 147.5 132 59.1
Aa31LG9G13320 Aethionema arabicum HOM05D007500 ORTHO05D009197 1.0e-33 147.1 127 61.4
Psat5g095440 Pisum sativum HOM05D007500 ORTHO05D009197 1.0e-33 147.1 129 65.9
Sopen05g010600 Solanum pennellii HOM05D007500 ORTHO05D009197 1.3e-33 146.7 132 59.1
RcHm_v2.0_Chr4g0430411 Rosa chinensis HOM05D007500 ORTHO05D009197 2.9e-33 145.6 119 64.7
Medtr3g085430 Medicago truncatula HOM05D007500 ORTHO05D009197 5.0e-33 144.8 137 62.0
TAR381G0854 Trochodendron aralioides HOM05D007500 ORTHO05D009197 6.5e-33 144.4 141 57.4
VMungo1383G3421 Vigna mungo HOM05D007500 ORTHO05D009197 6.5e-33 144.4 130 63.8
Glyma.11G250000 Glycine max HOM05D007500 ORTHO05D009197 8.5e-33 144.1 137 59.9
AL8G17240 Arabidopsis lyrata HOM05D007500 ORTHO05D009197 1.1e-32 143.7 136 62.5
Nitab4.5_0000861g0040 Nicotiana tabacum HOM05D007500 ORTHO05D009197 1.4e-32 143.3 114 64.9
Prupe.1G226700 Prunus persica HOM05D007500 ORTHO05D009197 1.4e-32 143.3 163 54.0
Sp2g08040 Schrenkiella parvula HOM05D007500 ORTHO05D009197 1.9e-32 142.9 128 65.6
Glyma.18G007100 Glycine max HOM05D007500 ORTHO05D009197 4.2e-32 141.7 130 63.1
Cc11_g16840 Coffea canephora HOM05D007500 ORTHO05D009197 1.6e-31 139.8 127 61.4
Lsat_1_v5_gn_8_131281 Lactuca sativa HOM05D007500 ORTHO05D009197 1.6e-31 139.8 131 58.8
Phvul.001G261300 Phaseolus vulgaris HOM05D007500 ORTHO05D009197 1.6e-31 139.8 139 56.8
Thhalv10003290m.g Eutrema salsugineum HOM05D007500 ORTHO05D009197 2.7e-31 139.0 128 64.1
C07p25790 Brassica napus HOM05D007500 ORTHO05D009197 6.1e-31 137.9 129 63.6
Actinidia30653 Actinidia chinensis HOM05D007500 ORTHO05D009197 7.9e-31 137.5 114 66.7
BcaC06g31713 Brassica carinata HOM05D007500 ORTHO05D009197 7.9e-31 137.5 129 63.6
BcaC06g31714 Brassica carinata HOM05D007500 ORTHO05D009197 7.9e-31 137.5 129 63.6
Carub.0008s0545 Capsella rubella HOM05D007500 ORTHO05D009197 7.9e-31 137.5 129 60.5
TPR.G28279 Trifolium pratense HOM05D007500 ORTHO05D009197 1.8e-30 136.3 110 69.1
EL10Ac6g13495 Beta vulgaris HOM05D007500 ORTHO05D009197 3.0e-30 135.6 129 59.7
AUR62024115 Chenopodium quinoa HOM05D007500 ORTHO05D009197 3.9e-30 135.2 127 60.6
DCAR_031200 Daucus carota HOM05D007500 ORTHO05D009197 5.1e-30 134.8 129 56.6
CARHR180640 Cardamine hirsuta HOM05D007500 ORTHO05D009197 6.7e-30 134.4 121 61.2
BcaC06g34668 Brassica carinata HOM05D007500 ORTHO05D009197 1.1e-29 133.7 130 62.3
BolC7t43101H Brassica oleracea HOM05D007500 ORTHO05D009197 1.1e-29 133.7 130 62.3
MBI01_g29007_MAGBIO Magnolia biondii HOM05D007500 ORTHO05D009197 1.5e-29 133.3 132 55.3
PSO541G0382 Papaver somniferum HOM05D007500 ORTHO05D009197 1.5e-29 133.3 115 57.4
A06p47960 Brassica napus HOM05D007500 ORTHO05D009197 2.5e-29 132.5 127 60.6
BraA06t27666Z Brassica rapa HOM05D007500 ORTHO05D009197 2.5e-29 132.5 127 60.6
Rhsim12G0026300 Rhododendron simsii HOM05D007500 ORTHO05D009197 2.2e-28 129.4 119 62.2
AUR62005615 Chenopodium quinoa HOM05D007500 ORTHO05D009197 2.8e-28 129.0 120 60.8
MSTRG.7998 Avicennia marina HOM05D007500 ORTHO05D009197 4.8e-28 128.3 133 55.6
Migut.K00728 Erythranthe guttata HOM05D007500 ORTHO05D009197 8.2e-28 127.5 135 56.3
HanXRQChr09g0258281 Helianthus annuus HOM05D007500 ORTHO05D009197 8.2e-28 127.5 131 51.1
MD16G1118400 Malus domestica HOM05D007500 ORTHO05D009197 2.4e-27 125.9 133 52.6
Lj6g0001546 Lotus japonicus HOM05D007500 ORTHO05D009197 6.9e-27 124.4 126 56.3
Lalb_Chr08g0230661 Lupinus albus HOM05D007500 ORTHO05D009197 1.2e-26 123.6 127 54.3
SGA_v2.0_scaffold9G04716 Striga asiatica HOM05D007500 ORTHO05D009197 1.2e-26 123.6 138 52.9
Ah.03g136190 Amaranthus hybridus HOM05D007500 ORTHO05D009197 1.5e-26 123.2 143 49.7
MD13G1118300 Malus domestica HOM05D007500 ORTHO05D009197 2.6e-26 122.5 132 52.3
CAN.G43.17 Capsicum annuum HOM05D007500 ORTHO05D009197 4.5e-26 121.7 105 63.8
unitig_26.g10395 Utricularia gibba HOM05D007500 ORTHO05D009197 4.5e-26 121.7 120 54.2
ECA233G2547 Erigeron canadensis HOM05D007500 ORTHO05D009197 1.4e-24 116.7 107 57.9
ATR1120G099 Amborella trichopoda HOM05D007500 ORTHO05D009197 7.2e-24 114.4 122 54.9
PSO675G4883 Papaver somniferum HOM05D007500 ORTHO05D009197 7.2e-24 114.4 104 55.8
SalBow2G0500 Salvia bowleyana HOM05D007500 ORTHO05D009197 1.6e-23 113.2 106 57.5
CDE06G2379 Ceratophyllum demersum HOM05D007500 ORTHO05D009197 4.6e-23 111.7 124 49.2
HPP92_002864 Vanilla planifolia HOM05D007500 ORTHO05D009197 4.1e-19 98.6 96 57.3
Zm00001eb122050 Zea mays HOM05D007500 ORTHO05D009197 4.1e-19 98.6 131 45.8
Os01g0183400 Oryza sativa ssp. japonica HOM05D007500 ORTHO05D009197 1.6e-15 86.7 117 42.7
SEGI_35529 Sequoiadendron giganteum HOM05D007500 ORTHO05D009197 2.8e-12 75.9 88 45.5
Pp3c13_23370 Physcomitrium patens HOM05D020496 ORTHO05D009197 5.0e-09 65.1 147 32.7
Pp3c13_23373 Physcomitrium patens HOM05D020496 ORTHO05D009197 5.0e-09 65.1 147 32.7
CAN.G1248.23 Capsicum annuum HOM05D000764 ORTHO05D009197 8.5e-09 64.3 53 62.3
ECA238G0759 Erigeron canadensis HOM05D002489 ORTHO05D002653 1.6e-07 60.1 128 32.8
CDE04G1622 Ceratophyllum demersum HOM05D002489 ORTHO05D002653 2.1e-07 59.7 115 33.9
GSVIVG01036581001 Vitis vinifera HOM05D002489 ORTHO05D002653 2.7e-07 59.3 115 32.2
CDE07G0320 Ceratophyllum demersum HOM05D002489 ORTHO05D002653 4.7e-07 58.5 115 33.0
SGA_v2.0_scaffold29G12136 Striga asiatica HOM05D002489 ORTHO05D002653 8.0e-07 57.8 126 34.9
MSTRG.12423 Avicennia marina HOM05D002489 ORTHO05D002653 1.0e-06 57.4 127 31.5
CSS0027937 Camellia sinensis var. sinensis HOM05D002489 ORTHO05D002653 1.0e-06 57.4 127 29.9
SalBow3G1159 Salvia bowleyana HOM05D002489 ORTHO05D002653 1.0e-06 57.4 127 29.1
TPR.G16405 Trifolium pratense HOM05D002489 ORTHO05D002653 1.0e-06 57.4 124 32.3
Cc00_g08160 Coffea canephora HOM05D002489 ORTHO05D002653 2.3e-06 56.2 117 33.3
THA.LOC104809911 Tarenaya hassleriana HOM05D002489 ORTHO05D002653 5.2e-06 55.1 73 41.1
Actinidia18374 Actinidia chinensis HOM05D002489 ORTHO05D002653 6.7e-06 54.7 115 30.4
PRCOL_00001578 Prasinoderma coloniale HOM05D001394 ORTHO05D001237 6.7e-06 54.7 77 37.7
Rhsim13G0202300 Rhododendron simsii HOM05D002489 ORTHO05D002653 6.7e-06 54.7 127 29.9
Actinidia07005 Actinidia chinensis HOM05D002489 ORTHO05D002653 8.8e-06 54.3 127 29.9
ATR0307G117 Amborella trichopoda HOM05D002489 ORTHO05D002653 8.8e-06 54.3 94 34.0
ATR0709G046 Amborella trichopoda HOM05D002489 ORTHO05D002653 8.8e-06 54.3 75 41.3
HanXRQChr03g0091651 Helianthus annuus HOM05D002489 ORTHO05D002653 8.8e-06 54.3 102 34.3
Lalb_Chr10g0106061 Lupinus albus HOM05D002489 ORTHO05D002653 8.8e-06 54.3 105 33.3
Lalb_Chr17g0347751 Lupinus albus HOM05D002489 ORTHO05D002653 8.8e-06 54.3 104 32.7
Nitab4.5_0002567g0120 Nicotiana tabacum HOM05D002489 ORTHO05D002653 8.8e-06 54.3 125 31.2
RcHm_v2.0_Chr1g0328761 Rosa chinensis HOM05D002489 ORTHO05D002653 8.8e-06 54.3 114 34.2
Sp6g35820 Schrenkiella parvula HOM05D002489 ORTHO05D002653 8.8e-06 54.3 75 40.0
Sed0020453 Sechium edule HOM05D002489 ORTHO05D002653 8.8e-06 54.3 104 34.6
SMO358G0741 Selaginella moellendorffii HOM05D020496 ORTHO05D009197 8.8e-06 54.3 89 34.8
HPP92_002225 Vanilla planifolia HOM05D002489 ORTHO05D002653 8.8e-06 54.3 75 41.3


User provided reference genes

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