Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG08G009670 Citrullus lanatus HOM05D005213 ORTHO05D006229 9.9e-190 666.8 373 100.0
MELO3C026560.2 Cucumis melo HOM05D005213 ORTHO05D006229 2.6e-105 386.3 395 65.6
CsaV3_6G031800 Cucumis sativus L. HOM05D005213 ORTHO05D006229 1.4e-103 380.6 389 66.1
Sed0001538 Sechium edule HOM05D005213 ORTHO05D006229 1.4e-58 231.1 327 54.4
Ciclev10008490m.g Citrus clementina HOM05D005213 ORTHO05D006229 8.7e-53 211.8 408 40.4
Prupe.1G401300 Prunus persica HOM05D005213 ORTHO05D006229 1.5e-52 211.1 404 39.1
Potri.006G217900 Populus trichocarpa HOM05D005213 ORTHO05D006229 2.2e-51 207.2 413 39.2
Manes.03G055700 Manihot esculenta HOM05D005213 ORTHO05D006229 3.7e-51 206.5 376 40.2
TAR624G0676 Trochodendron aralioides HOM05D005213 ORTHO05D006229 3.1e-50 203.4 395 39.2
Manes.16G087800 Manihot esculenta HOM05D005213 ORTHO05D006229 5.3e-50 202.6 396 39.4
TWI34G0479 Tripterygium wilfordii HOM05D005213 ORTHO05D006229 4.5e-49 199.5 395 39.5
Gohir.D05G039200 Gossypium hirsutum HOM05D005213 ORTHO05D006229 5.9e-49 199.1 379 38.5
RcHm_v2.0_Chr6g0304741 Rosa chinensis HOM05D005213 ORTHO05D006229 1.3e-48 198.0 412 42.0
Duzib187G1454 Durio zibethinus HOM05D005213 ORTHO05D006229 2.2e-48 197.2 376 41.0
MD15G1047100 Malus domestica HOM05D005213 ORTHO05D006229 2.9e-48 196.8 416 38.9
Gorai.009G039700 Gossypium raimondii HOM05D005213 ORTHO05D006229 3.8e-48 196.4 379 38.8
Nitab4.5_0000508g0090 Nicotiana tabacum HOM05D005213 ORTHO05D006229 1.2e-46 191.4 391 37.1
FvH4_2g37040 Fragaria vesca HOM05D005213 ORTHO05D006229 2.1e-46 190.7 409 40.3
FAN27G3126 Fragaria x ananassa HOM05D005213 ORTHO05D006229 3.6e-46 189.9 409 39.9
Cpa.g.sc82.19 Carica papaya HOM05D005213 ORTHO05D006229 7.9e-46 188.7 384 38.0
Lj7P206T8 Lonicera japonica HOM05D005213 ORTHO05D006229 1.4e-45 188.0 322 41.9
FAN15G1397 Fragaria x ananassa HOM05D005213 ORTHO05D006229 1.8e-45 187.6 411 39.7
CiPaw.16G068600 Carya illinoinensis HOM05D005213 ORTHO05D006229 2.3e-45 187.2 391 38.1
Thecc.09G066400 Theobroma cacao HOM05D005213 ORTHO05D006229 3.9e-45 186.4 383 39.2
FAN20G0215 Fragaria x ananassa HOM05D005213 ORTHO05D006229 6.7e-45 185.7 409 39.4
MD08G1046900 Malus domestica HOM05D005213 ORTHO05D006229 6.7e-45 185.7 415 36.4
Cfa023359 Carpinus fangiana HOM05D005213 ORTHO05D006229 1.5e-44 184.5 404 37.6
Migut.A00332 Erythranthe guttata HOM05D005213 ORTHO05D006229 1.9e-44 184.1 388 38.1
Peaxi162Scf00922g00016 Petunia axillaris HOM05D005213 ORTHO05D006229 1.9e-44 184.1 376 36.7
Haze_13552 Corylus avellana HOM05D005213 ORTHO05D006229 2.5e-44 183.7 395 38.0
Cc08_g07800 Coffea canephora HOM05D005213 ORTHO05D006229 5.7e-44 182.6 403 36.5
EL10Ac5g11257 Beta vulgaris HOM05D005213 ORTHO05D006229 2.2e-43 180.6 408 36.5
Glyma.06G058600 Glycine max HOM05D005213 ORTHO05D006229 6.3e-43 179.1 380 39.5
Gorai.010G094100 Gossypium raimondii HOM05D005213 ORTHO05D006229 6.3e-43 179.1 376 36.4
VMungo1309G2063 Vigna mungo HOM05D005213 ORTHO05D006229 1.8e-42 177.6 378 38.1
Gohir.A06G081000 Gossypium hirsutum HOM05D005213 ORTHO05D006229 3.1e-42 176.8 376 36.4
Gohir.D06G080700 Gossypium hirsutum HOM05D005213 ORTHO05D006229 4.1e-42 176.4 376 36.2
Dinv41845 Davidia involucrata HOM05D005213 ORTHO05D006229 6.9e-42 175.6 425 39.5
Glyma.04G057900 Glycine max HOM05D005213 ORTHO05D006229 1.5e-41 174.5 391 37.1
Nitab4.5_0007212g0010 Nicotiana tabacum HOM05D005213 ORTHO05D006229 7.7e-41 172.2 392 36.7
CAN.G1059.3 Capsicum annuum HOM05D005213 ORTHO05D006229 1.0e-40 171.8 370 38.6
Eucgr.C00749 Eucalyptus grandis HOM05D005213 ORTHO05D006229 1.3e-40 171.4 399 38.6
Duzib150G1003 Durio zibethinus HOM05D005213 ORTHO05D006229 2.9e-40 170.2 341 39.0
Nn8g38551 Nelumbo nucifera HOM05D005213 ORTHO05D006229 3.8e-40 169.9 393 36.1
Lj1g0011388 Lotus japonicus HOM05D005213 ORTHO05D006229 2.5e-39 167.2 381 36.5
Lalb_Chr22g0349651 Lupinus albus HOM05D005213 ORTHO05D006229 3.2e-39 166.8 384 38.8
Phvul.009G084600 Phaseolus vulgaris HOM05D005213 ORTHO05D006229 5.5e-39 166.0 377 38.2
COL.COLO4_21169 Corchorus olitorius HOM05D005213 ORTHO05D006229 1.2e-38 164.9 400 37.0
Oeu020105.1 Olea europaea HOM05D005213 ORTHO05D006229 4.7e-38 162.9 381 37.8
Ca_15799_v3 Cicer arietinum L. HOM05D005213 ORTHO05D006229 2.3e-37 160.6 398 37.2
Hund02523 Selenicereus undatus HOM05D005213 ORTHO05D006229 2.3e-37 160.6 325 38.8
DCAR_001248 Daucus carota HOM05D005213 ORTHO05D006229 5.1e-37 159.5 378 35.4
TWI32G0481 Tripterygium wilfordii HOM05D005213 ORTHO05D006229 4.4e-36 156.4 373 35.1
TPR.G21422 Trifolium pratense HOM05D005213 ORTHO05D006229 7.4e-36 155.6 315 39.4
Aqoxy7G04081 Aquilegia oxysepala HOM05D005213 ORTHO05D006229 9.7e-36 155.2 395 34.4
Duzib168G1397 Durio zibethinus HOM05D005213 ORTHO05D006229 1.7e-35 154.5 365 35.6
MBI19_g18107_MAGBIO Magnolia biondii HOM05D004195 ORTHO05D005309 6.3e-35 152.5 392 34.2
Lalb_Chr11g0063421 Lupinus albus HOM05D005213 ORTHO05D006229 7.0e-34 149.1 322 35.4
CSS0041342 Camellia sinensis var. sinensis HOM05D005213 ORTHO05D006229 2.0e-33 147.5 474 34.4
Medtr3g105580 Medicago truncatula HOM05D005213 ORTHO05D006229 7.7e-33 145.6 312 37.5
GSVIVG01035506001 Vitis vinifera HOM05D005213 ORTHO05D006229 1.3e-32 144.8 371 34.8
HanXRQChr03g0067421 Helianthus annuus HOM05D005213 ORTHO05D006229 2.2e-32 144.1 368 32.9
Rhsim04G0156600 Rhododendron simsii HOM05D005213 ORTHO05D006229 2.2e-32 144.1 320 36.6
CDE05G3316 Ceratophyllum demersum HOM05D005213 ORTHO05D006229 2.9e-32 143.7 367 34.3
TPR.G38861 Trifolium pratense HOM05D005213 ORTHO05D006229 3.8e-32 143.3 388 34.5
Psat5g033280 Pisum sativum HOM05D005213 ORTHO05D006229 5.0e-32 142.9 318 39.6
Cfa017841 Carpinus fangiana HOM05D005213 ORTHO05D006229 1.4e-31 141.4 324 37.7
HanXRQChr08g0228011 Helianthus annuus HOM05D005213 ORTHO05D006229 1.9e-31 141.0 359 33.1
vmacro08659 Vaccinium macrocarpon HOM05D005213 ORTHO05D006229 2.5e-31 140.6 356 37.9
ECA240G0440 Erigeron canadensis HOM05D005213 ORTHO05D006229 3.6e-30 136.7 377 36.1
Haze_18367 Corylus avellana HOM05D005213 ORTHO05D006229 8.0e-30 135.6 368 35.3
Medtr1g014750 Medicago truncatula HOM05D005213 ORTHO05D006229 1.4e-29 134.8 350 36.3
SGA_v2.0_scaffold22G09922 Striga asiatica HOM05D005213 ORTHO05D006229 1.4e-29 134.8 359 34.3
PSO386G0069 Papaver somniferum HOM05D005213 ORTHO05D006229 1.8e-29 134.4 438 34.9
Sc10g0009530 Simmondsia chinensis HOM05D005213 ORTHO05D006229 8.8e-29 132.1 314 36.3
Nn6g35650 Nelumbo nucifera HOM05D005213 ORTHO05D006229 1.5e-28 131.3 389 35.2
AUR62032196 Chenopodium quinoa HOM05D005213 ORTHO05D006229 2.6e-28 130.6 380 32.4
Hma1.2p1_0920F.1_g236590 Hydrangea macrophylla HOM05D005213 ORTHO05D006229 3.3e-28 130.2 336 33.3
ECA234G4818 Erigeron canadensis HOM05D005213 ORTHO05D006229 1.7e-27 127.9 370 33.8
ATR0681G043 Amborella trichopoda HOM05D005213 ORTHO05D006229 1.1e-26 125.2 394 31.7
CDE05G3450 Ceratophyllum demersum HOM05D005213 ORTHO05D006229 1.8e-26 124.4 384 29.9
THA.LOC104810950 Tarenaya hassleriana HOM05D005213 ORTHO05D006229 2.4e-26 124.0 373 36.2
Gohir.A05G037666 Gossypium hirsutum HOM05D005213 ORTHO05D006229 1.2e-25 121.7 164 42.1
HanXRQChr10g0309951 Helianthus annuus HOM05D005213 ORTHO05D006229 1.6e-25 121.3 365 34.2
PGR142G1942 Punica granatum HOM05D005213 ORTHO05D006229 5.9e-25 119.4 402 29.6
PSO223G0037 Papaver somniferum HOM05D005213 ORTHO05D006229 5.5e-23 112.8 440 30.2
MSTRG.11768 Avicennia marina HOM05D005213 ORTHO05D006229 7.2e-23 112.5 271 37.6
Zm00001eb019450 Zea mays HOM05D005213 ORTHO05D006229 9.4e-23 112.1 352 30.1
HPP92_002168 Vanilla planifolia HOM05D006173 ORTHO05D007685 2.1e-22 110.9 313 31.9
AUR62036963 Chenopodium quinoa HOM05D005213 ORTHO05D006229 1.4e-21 108.2 374 28.1
Oeu022129.1 Olea europaea HOM05D005213 ORTHO05D006229 4.0e-21 106.7 301 32.6
CDE11G0900 Ceratophyllum demersum HOM05D005213 ORTHO05D006229 5.2e-21 106.3 324 34.9
CANSAT25G2504 Cannabis sativa HOM05D005213 ORTHO05D006229 3.3e-20 103.6 316 33.9
unitig_32.g10930 Utricularia gibba HOM05D005213 ORTHO05D006229 4.4e-20 103.2 313 33.2
Psat6g023400 Pisum sativum HOM05D005213 ORTHO05D006229 2.8e-19 100.5 356 29.5
Oeu030214.1 Olea europaea HOM05D005213 ORTHO05D006229 1.4e-18 98.2 384 30.5
Phvul.001G044200 Phaseolus vulgaris HOM05D005213 ORTHO05D006229 1.8e-18 97.8 280 30.4
Solyc08g067270.3 Solanum lycopersicum HOM05D005213 ORTHO05D006229 1.0e-16 92.0 162 35.2
Atru.chr7.1814 Acer truncatum HOM05D005213 ORTHO05D006229 1.1e-15 88.6 110 50.9
BraA03t10361Z Brassica rapa HOM05D005213 ORTHO05D006229 1.5e-15 88.2 310 29.4
Ca_13089_v3 Cicer arietinum L. HOM05D005213 ORTHO05D006229 3.2e-15 87.0 278 33.8
Aa31LG1G13440 Aethionema arabicum HOM05D005213 ORTHO05D006229 1.6e-14 84.7 176 42.6
Sp6g23210 Schrenkiella parvula HOM05D005213 ORTHO05D006229 3.6e-14 83.6 52 88.5
HPP92_013274 Vanilla planifolia HOM05D005213 ORTHO05D006229 3.6e-14 83.6 323 27.9
Actinidia27819 Actinidia chinensis HOM05D005213 ORTHO05D006229 4.7e-14 83.2 183 40.4
A10p18740 Brassica napus HOM05D005213 ORTHO05D006229 1.0e-13 82.0 47 91.5
BraA10t43954Z Brassica rapa HOM05D005213 ORTHO05D006229 1.0e-13 82.0 47 91.5
BcaB08g36461 Brassica carinata HOM05D005213 ORTHO05D006229 1.4e-13 81.6 47 91.5
BcaC01g06616 Brassica carinata HOM05D005213 ORTHO05D006229 1.4e-13 81.6 47 91.5
C03p12080 Brassica napus HOM05D005213 ORTHO05D006229 1.4e-13 81.6 47 91.5
BolC3t13679H Brassica oleracea HOM05D005213 ORTHO05D006229 1.4e-13 81.6 47 91.5
BraA03t10362Z Brassica rapa HOM05D005213 ORTHO05D006229 1.4e-13 81.6 47 91.5
C09p54690 Brassica napus HOM05D005213 ORTHO05D006229 1.8e-13 81.3 47 91.5
BcaB01g04752 Brassica carinata HOM05D005213 ORTHO05D006229 3.0e-13 80.5 47 89.4
BolC9t58333H Brassica oleracea HOM05D005213 ORTHO05D006229 3.0e-13 80.5 51 86.3
BcaC04g19528 Brassica carinata HOM05D005213 ORTHO05D006229 4.0e-13 80.1 47 91.5
SalBow8G0306 Salvia bowleyana HOM05D005213 ORTHO05D006229 6.8e-13 79.3 351 30.2
A03p10500 Brassica napus HOM05D005213 ORTHO05D006229 8.8e-13 79.0 309 33.3
Phvul.001G044400 Phaseolus vulgaris HOM05D005213 ORTHO05D006229 8.8e-13 79.0 369 26.0
BcaB05g22758 Brassica carinata HOM05D005213 ORTHO05D006229 5.7e-12 76.3 44 90.9
BNapus_Darmor_BZH_scaffold_38p00940 Brassica napus HOM05D005213 ORTHO05D006229 5.7e-12 76.3 44 90.9
BraA02t05631Z Brassica rapa HOM05D005213 ORTHO05D006229 5.7e-12 76.3 44 90.9
CARHR191550 Cardamine hirsuta HOM05D005213 ORTHO05D006229 5.7e-12 76.3 44 90.9
Thhalv10014216m.g Eutrema salsugineum HOM05D005213 ORTHO05D006229 5.7e-12 76.3 44 90.9
Sopen08g021200 Solanum pennellii HOM05D005213 ORTHO05D006229 7.5e-12 75.9 87 40.2
AT5G21280 Arabidopsis thaliana HOM05D005213 ORTHO05D006229 9.8e-12 75.5 312 32.4
BcaC03g13850 Brassica carinata HOM05D005213 ORTHO05D006229 1.3e-11 75.1 43 90.7
Carub.0006s1962 Capsella rubella HOM05D005213 ORTHO05D006229 1.3e-11 75.1 44 88.6
BolC2t07127H Brassica oleracea HOM05D005213 ORTHO05D006229 2.8e-11 73.9 55 72.7
AL6G32940 Arabidopsis lyrata HOM05D005213 ORTHO05D006229 1.1e-10 72.0 62 67.7
VMungo0477G0001 Vigna mungo HOM05D005213 ORTHO05D006229 3.1e-10 70.5 187 38.0
Actinidia26432 Actinidia chinensis HOM05D005213 ORTHO05D006229 5.4e-10 69.7 98 37.8
HanXRQChr09g0261901 Helianthus annuus HOM05D005213 ORTHO05D006229 4.5e-09 66.6 181 34.3
Phvul.001G044300 Phaseolus vulgaris HOM05D005213 ORTHO05D006229 7.7e-09 65.9 183 35.0
arahy.Tifrunner.gnm1.ann1.3D63PE Arachis hypogaea HOM05D005213 ORTHO05D006229 5.0e-08 63.2 304 25.3
arahy.Tifrunner.gnm1.ann1.698XEU Arachis hypogaea HOM05D005213 ORTHO05D006229 8.6e-08 62.4 307 26.7
SEGI_40729 Sequoiadendron giganteum HOM05D005213 ORTHO05D006229 1.9e-07 61.2 40 60.0
Lalb_Chr08g0244621 Lupinus albus HOM05D005213 ORTHO05D006229 5.5e-07 59.7 82 37.8
ClCG05G015950 Citrullus lanatus HOM05D005213 ORTHO05D006229 8.0e-06 55.8 94 44.7


User provided reference genes

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