Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG08G009440 Citrullus lanatus HOM05D005125 ORTHO05D006777 1.2e-255 885.9 439 100.0
CsaV3_6G031580 Cucumis sativus L. HOM05D005125 ORTHO05D006777 1.1e-232 809.7 439 91.1
Sed0024407 Sechium edule HOM05D005125 ORTHO05D006777 4.9e-204 714.5 390 90.5
CiPaw.07G138900 Carya illinoinensis HOM05D005125 ORTHO05D006777 6.4e-188 661.0 447 75.6
MD15G1002000 Malus domestica HOM05D005125 ORTHO05D006777 2.4e-187 659.1 406 79.6
Cfa014076 Carpinus fangiana HOM05D005125 ORTHO05D006777 7.8e-186 654.1 443 74.9
Prupe.1G354500 Prunus persica HOM05D005125 ORTHO05D006777 1.7e-185 652.9 399 80.2
MD08G1002400 Malus domestica HOM05D005125 ORTHO05D006777 3.0e-185 652.1 440 75.5
FvH4_2g37450 Fragaria vesca HOM05D005125 ORTHO05D006777 8.7e-185 650.6 398 80.4
FAN27G2626 Fragaria x ananassa HOM05D005125 ORTHO05D006777 1.5e-184 649.8 398 80.2
Potri.005G250300 Populus trichocarpa HOM05D005125 ORTHO05D006777 1.9e-184 649.4 408 76.2
MELO3C026539.2 Cucumis melo HOM05D005125 ORTHO05D006777 3.3e-184 648.7 362 88.7
Potri.002G010800 Populus trichocarpa HOM05D005125 ORTHO05D006777 5.6e-184 647.9 438 73.7
Manes.05G134400 Manihot esculenta HOM05D005125 ORTHO05D006777 2.1e-183 646.0 421 75.5
FAN20G1306 Fragaria x ananassa HOM05D005125 ORTHO05D006777 4.7e-183 644.8 398 80.2
RcHm_v2.0_Chr6g0304271 Rosa chinensis HOM05D005125 ORTHO05D006777 4.7e-183 644.8 399 79.9
Sabra05G0193900 Salix brachista HOM05D005125 ORTHO05D006777 1.4e-182 643.3 400 77.5
Manes.18G005400 Manihot esculenta HOM05D005125 ORTHO05D006777 4.0e-182 641.7 434 73.5
CiPaw.08G073000 Carya illinoinensis HOM05D005125 ORTHO05D006777 5.3e-182 641.3 442 74.0
QL02p014036 Quercus lobata HOM05D005125 ORTHO05D006777 9.0e-182 640.6 434 73.7
Ciclev10003241m.g Citrus clementina HOM05D005125 ORTHO05D006777 1.2e-181 640.2 418 75.6
Cpa.g.sc26.198 Carica papaya HOM05D005125 ORTHO05D006777 7.6e-181 637.5 428 72.9
Duzib093G0577 Durio zibethinus HOM05D005125 ORTHO05D006777 9.9e-181 637.1 427 74.2
TWI56G0714 Tripterygium wilfordii HOM05D005125 ORTHO05D006777 9.9e-181 637.1 400 77.8
GSVIVG01013360001 Vitis vinifera HOM05D005125 ORTHO05D006777 9.9e-181 637.1 405 76.3
FAN15G0126 Fragaria x ananassa HOM05D005125 ORTHO05D006777 1.7e-180 636.3 412 77.4
CANSAT25G1708 Cannabis sativa HOM05D005125 ORTHO05D006777 1.9e-179 632.9 403 77.2
Ca_15433_v3 Cicer arietinum L. HOM05D005125 ORTHO05D006777 3.2e-179 632.1 413 75.8
Haze_22773 Corylus avellana HOM05D005125 ORTHO05D006777 3.2e-179 632.1 389 79.4
Lalb_Chr11g0061631 Lupinus albus HOM05D005125 ORTHO05D006777 1.6e-178 629.8 429 75.1
Gohir.A01G105600 Gossypium hirsutum HOM05D005125 ORTHO05D006777 3.5e-178 628.6 398 76.4
Gorai.002G117000 Gossypium raimondii HOM05D005125 ORTHO05D006777 7.8e-178 627.5 398 76.4
Gohir.D01G091900 Gossypium hirsutum HOM05D005125 ORTHO05D006777 2.3e-177 625.9 398 76.1
Thecc.08G058900 Theobroma cacao HOM05D005125 ORTHO05D006777 3.9e-177 625.2 398 76.4
Eucgr.L00923 Eucalyptus grandis HOM05D005125 ORTHO05D006777 5.1e-177 624.8 414 74.6
Lalb_Chr23g0265791 Lupinus albus HOM05D005125 ORTHO05D006777 8.7e-177 624.0 399 77.9
Duzib116G0840 Durio zibethinus HOM05D005125 ORTHO05D006777 1.1e-176 623.6 398 76.4
Glyma.06G018200 Glycine max HOM05D005125 ORTHO05D006777 1.1e-176 623.6 399 76.7
Hma1.2p1_0507F.1_g168460 Hydrangea macrophylla HOM05D005125 ORTHO05D006777 1.9e-176 622.9 402 76.1
Lj1g0005535 Lotus japonicus HOM05D005125 ORTHO05D006777 2.5e-176 622.5 399 76.9
Dinv31939 Davidia involucrata HOM05D005125 ORTHO05D006777 9.6e-176 620.5 427 72.6
THA.LOC104813172 Tarenaya hassleriana HOM05D005125 ORTHO05D006777 9.6e-176 620.5 407 73.5
CSS0022218 Camellia sinensis var. sinensis HOM05D005125 ORTHO05D006777 1.3e-175 620.2 399 75.7
Atru.chr13.135 Acer truncatum HOM05D005125 ORTHO05D006777 4.8e-175 618.2 413 73.4
TPR.G38202 Trifolium pratense HOM05D005125 ORTHO05D006777 1.8e-174 616.3 438 71.7
Actinidia37922 Actinidia chinensis HOM05D005125 ORTHO05D006777 3.1e-174 615.5 402 74.6
Glyma.04G017900 Glycine max HOM05D005125 ORTHO05D006777 5.3e-174 614.8 437 71.9
TAR625G0173 Trochodendron aralioides HOM05D005125 ORTHO05D006777 1.2e-173 613.6 401 74.6
Medtr3g115290 Medicago truncatula HOM05D005125 ORTHO05D006777 2.0e-173 612.8 429 71.8
PGR083G1107 Punica granatum HOM05D005125 ORTHO05D006777 9.9e-173 610.5 400 74.0
Rhsim06G0007400 Rhododendron simsii HOM05D005125 ORTHO05D006777 3.2e-171 605.5 399 73.2
PSO675G8084 Papaver somniferum HOM05D005125 ORTHO05D006777 5.4e-171 604.7 395 74.9
Phvul.009G010800 Phaseolus vulgaris HOM05D005125 ORTHO05D006777 5.4e-171 604.7 399 75.2
Aqoxy6G01728 Aquilegia oxysepala HOM05D005125 ORTHO05D006777 7.1e-171 604.4 400 73.2
BcaB07g31085 Brassica carinata HOM05D005125 ORTHO05D006777 7.1e-171 604.4 404 72.5
Lj4A11T69 Lonicera japonica HOM05D005125 ORTHO05D006777 9.3e-171 604.0 405 73.1
PSO541G3228 Papaver somniferum HOM05D005125 ORTHO05D006777 9.3e-171 604.0 395 74.9
EL10Ac1g01960 Beta vulgaris HOM05D005125 ORTHO05D006777 2.1e-170 602.8 426 70.0
MD12G1003300 Malus domestica HOM05D005125 ORTHO05D006777 6.0e-170 601.3 487 66.5
Carub.0008s0686 Capsella rubella HOM05D005125 ORTHO05D006777 1.0e-169 600.5 409 70.7
A09p19570 Brassica napus HOM05D005125 ORTHO05D006777 1.3e-169 600.1 408 71.6
Cc10_g00670 Coffea canephora HOM05D005125 ORTHO05D006777 1.3e-169 600.1 402 73.1
BcaC04g22006 Brassica carinata HOM05D005125 ORTHO05D006777 1.8e-169 599.7 408 71.6
C09p24930 Brassica napus HOM05D005125 ORTHO05D006777 1.8e-169 599.7 408 71.6
AL8G19280 Arabidopsis lyrata HOM05D005125 ORTHO05D006777 2.3e-169 599.4 394 73.1
BraA09t37570Z Brassica rapa HOM05D005125 ORTHO05D006777 2.3e-169 599.4 408 71.6
Lsat_1_v5_gn_2_5181 Lactuca sativa HOM05D005125 ORTHO05D006777 3.9e-169 598.6 411 70.1
Solyc04g082340.3 Solanum lycopersicum HOM05D005125 ORTHO05D006777 8.7e-169 597.4 400 72.5
Sopen04g035960 Solanum pennellii HOM05D005125 ORTHO05D006777 8.7e-169 597.4 400 72.5
AT5G42320 Arabidopsis thaliana HOM05D005125 ORTHO05D006777 1.1e-168 597.0 398 72.6
arahy.Tifrunner.gnm1.ann1.VXG7Z6 Arachis hypogaea HOM05D005125 ORTHO05D006777 2.1e-167 592.8 415 71.1
Aa31LG9G12440 Aethionema arabicum HOM05D005125 ORTHO05D006777 4.8e-167 591.7 438 68.3
arahy.Tifrunner.gnm1.ann1.1X7ZBM Arachis hypogaea HOM05D005125 ORTHO05D006777 1.1e-166 590.5 415 71.1
CARHR284930 Cardamine hirsuta HOM05D005125 ORTHO05D006777 1.8e-166 589.7 417 69.5
PGSC0003DMG400009979 Solanum tuberosum HOM05D005125 ORTHO05D006777 2.0e-165 586.3 413 70.2
Peaxi162Scf00893g00037 Petunia axillaris HOM05D005125 ORTHO05D006777 2.6e-165 585.9 400 73.2
HanXRQChr06g0183991 Helianthus annuus HOM05D005125 ORTHO05D006777 4.5e-165 585.1 387 71.6
Migut.C00961 Erythranthe guttata HOM05D005125 ORTHO05D006777 4.9e-164 581.6 402 69.9
Nitab4.5_0000588g0110 Nicotiana tabacum HOM05D005125 ORTHO05D006777 1.4e-163 580.1 387 73.6
Sp7g08250 Schrenkiella parvula HOM05D005125 ORTHO05D006777 1.4e-163 580.1 394 71.1
Ah.00g000800 Amaranthus hybridus HOM05D005125 ORTHO05D006777 5.5e-163 578.2 425 67.1
Rhsim07G0254900 Rhododendron simsii HOM05D005125 ORTHO05D006777 5.5e-163 578.2 389 72.5
Duzib041G0467 Durio zibethinus HOM05D005125 ORTHO05D006777 2.7e-162 575.9 422 69.0
SalBow7G1095 Salvia bowleyana HOM05D005125 ORTHO05D006777 1.0e-161 573.9 416 68.5
EL10Ac7g16836 Beta vulgaris HOM05D005125 ORTHO05D006777 3.9e-161 572.0 426 67.4
CAN.G311.115 Capsicum annuum HOM05D005125 ORTHO05D006777 1.1e-160 570.5 392 71.9
Actinidia28601 Actinidia chinensis HOM05D005125 ORTHO05D006777 1.5e-160 570.1 419 68.0
vmacro21811 Vaccinium macrocarpon HOM05D005125 ORTHO05D006777 4.3e-160 568.5 473 62.4
AUR62036871 Chenopodium quinoa HOM05D005125 ORTHO05D006777 5.6e-160 568.2 384 70.8
ECA238G0848 Erigeron canadensis HOM05D005125 ORTHO05D006777 9.6e-160 567.4 381 71.9
Lsat_1_v5_gn_8_26201 Lactuca sativa HOM05D005125 ORTHO05D006777 6.2e-159 564.7 393 68.4
SGA_v2.0_scaffold108G30863 Striga asiatica HOM05D005125 ORTHO05D006777 2.7e-154 549.3 431 64.7
vmacro04403 Vaccinium macrocarpon HOM05D005125 ORTHO05D006777 5.1e-153 545.0 423 65.5
Ca_15458_v3 Cicer arietinum L. HOM05D005125 ORTHO05D006777 8.7e-153 544.3 342 77.2
Hund05112 Selenicereus undatus HOM05D005125 ORTHO05D006777 4.8e-151 538.5 387 68.0
Nn5g30942 Nelumbo nucifera HOM05D005125 ORTHO05D006777 5.3e-150 535.0 353 73.1
VMungo1309G1587 Vigna mungo HOM05D005125 ORTHO05D006777 2.0e-149 533.1 354 74.6
Eucgr.E03516 Eucalyptus grandis HOM05D005125 ORTHO05D006777 2.6e-149 532.7 414 66.7
MBI08_g41521_MAGBIO Magnolia biondii HOM05D005125 ORTHO05D006777 7.9e-146 521.2 400 65.8
unitig_747.g21516 Utricularia gibba HOM05D005125 ORTHO05D006777 6.9e-142 508.1 394 61.7
Thhalv10027780m.g Eutrema salsugineum HOM05D005125 ORTHO05D006777 2.0e-141 506.5 336 72.0
Zm00001eb209310 Zea mays HOM05D005125 ORTHO05D006777 5.9e-141 505.0 388 63.7
Os02g0119300 Oryza sativa ssp. japonica HOM05D005125 ORTHO05D006777 2.5e-139 499.6 391 61.6
HPP92_007117 Vanilla planifolia HOM05D005125 ORTHO05D006777 1.6e-138 496.9 401 62.3
ATR0661G305 Amborella trichopoda HOM05D005125 ORTHO05D006777 3.3e-136 489.2 395 61.8
DCAR_016769 Daucus carota HOM05D005125 ORTHO05D006777 1.3e-135 487.3 388 62.4
CSS0019336 Camellia sinensis var. sinensis HOM05D005125 ORTHO05D006777 1.1e-134 484.2 302 76.8
CDE05G1644 Ceratophyllum demersum HOM05D005125 ORTHO05D006777 2.6e-133 479.6 359 64.9
Sc15g0004430 Simmondsia chinensis HOM05D005125 ORTHO05D006777 8.0e-130 468.0 299 73.6
SHI07997 Sapria himalayana HOM05D005125 ORTHO05D006777 3.9e-129 465.7 414 58.2
Gorai.009G188100 Gossypium raimondii HOM05D005125 ORTHO05D006777 9.7e-128 461.1 311 68.5
Gohir.D05G182800 Gossypium hirsutum HOM05D005125 ORTHO05D006777 1.4e-126 457.2 311 67.8
Gohir.A05G179600 Gossypium hirsutum HOM05D005125 ORTHO05D006777 3.8e-124 449.1 311 66.9
COL.COLO4_06662 Corchorus olitorius HOM05D005125 ORTHO05D006777 2.7e-117 426.4 282 73.8
Dinv05534 Davidia involucrata HOM05D005125 ORTHO05D006777 1.1e-110 404.4 272 72.8
Psat5g159120 Pisum sativum HOM05D005125 ORTHO05D006777 2.5e-107 393.3 281 70.8
AagrBONN_evm.TU.Sc2ySwM_362.2863 Anthoceros agrestis HOM05D005125 ORTHO05D006777 1.2e-104 384.4 310 59.7
Mapoly0045s0063 Marchantia polymorpha HOM05D005125 ORTHO05D006777 2.3e-100 370.2 304 57.9
SMO358G0159 Selaginella moellendorffii HOM05D005125 ORTHO05D006777 1.5e-91 340.9 276 60.5
Pp3c20_16570 Physcomitrium patens HOM05D005125 ORTHO05D006777 2.3e-89 333.6 403 44.9
ECA238G3411 Erigeron canadensis HOM05D005125 ORTHO05D006777 4.0e-89 332.8 220 70.5
BcaNung05255 Brassica carinata HOM05D005125 ORTHO05D006777 2.1e-77 293.9 214 67.8
Cre11.g467631 Chlamydomonas reinhardtii HOM05D005125 ORTHO05D006777 3.0e-76 290.0 316 46.2
MD00G1076900 Malus domestica HOM05D005125 ORTHO05D006777 2.2e-71 273.9 232 64.2
PRCOL_00006814 Prasinoderma coloniale HOM05D005125 ORTHO05D006777 5.1e-68 262.7 235 54.9
SGA_v2.0_scaffold195G40773 Striga asiatica HOM05D005125 ORTHO05D006777 5.1e-68 262.7 205 64.9
SEGI_03459 Sequoiadendron giganteum HOM05D005125 ORTHO05D006777 3.3e-67 260.0 195 64.1
BcaNung05254 Brassica carinata HOM05D005125 ORTHO05D006777 4.4e-64 249.6 172 69.2
Oeu056206.2 Olea europaea HOM05D005125 ORTHO05D006777 7.6e-56 222.2 142 74.6
BolC9t55384H Brassica oleracea HOM05D005125 ORTHO05D006777 4.0e-49 199.9 150 69.3
ECA233G3085 Erigeron canadensis HOM05D000006 ORTHO05D000001 2.1e-42 177.6 110 71.8
SEGI_37631 Sequoiadendron giganteum HOM05D005125 ORTHO05D006777 4.5e-40 169.9 114 64.0
MCO16G405 Micromonas commoda HOM05D005125 ORTHO05D006777 2.7e-37 160.6 134 54.5
SGA_v2.0_scaffold83G26467 Striga asiatica HOM05D005125 ORTHO05D006777 1.5e-35 154.8 130 62.3
ECA238G2450 Erigeron canadensis HOM05D000240 ORTHO05D002721 3.8e-31 140.2 181 43.6
Sc15g0004440 Simmondsia chinensis HOM05D005125 ORTHO05D006777 3.2e-30 137.1 123 59.3
Cc00_g07920 Coffea canephora HOM05D005125 ORTHO05D006777 9.4e-30 135.6 155 52.9
PRCOL_00005708 Prasinoderma coloniale HOM05D005125 ORTHO05D034490 3.0e-28 130.6 390 28.7
Cre16.g668950 Chlamydomonas reinhardtii HOM05D005125 ORTHO05D034490 3.9e-28 130.2 296 32.8
Oeu035185.1 Olea europaea HOM05D005125 ORTHO05D006777 1.3e-23 115.2 96 66.7
Lsat_1_v5_gn_1_87521 Lactuca sativa HOM05D005125 ORTHO05D007904 4.4e-19 100.1 63 68.3
Cc10_g14360 Coffea canephora HOM05D005125 ORTHO05D006777 3.8e-15 87.0 58 67.2
TPR.G33884 Trifolium pratense HOM05D005125 ORTHO05D006777 2.5e-14 84.3 52 71.2
ECA233G5321 Erigeron canadensis HOM05D000003 ORTHO05D000004 3.3e-11 73.9 54 64.8
C04p25390 Brassica napus HOM05D005125 ORTHO05D041222 9.1e-09 65.9 78 42.3
BolC4t24047H Brassica oleracea HOM05D005125 ORTHO05D041222 9.1e-09 65.9 78 42.3


User provided reference genes

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