Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG08G009090 Citrullus lanatus HOM05D004965 ORTHO05D004401 3.4e-55 218.0 104 100.0
CsaV3_6G036050 Cucumis sativus L. HOM05D004965 ORTHO05D004401 1.6e-33 146.0 107 73.8
MELO3C026507.2 Cucumis melo HOM05D004965 ORTHO05D004401 4.8e-33 144.4 102 72.5
Prupe.1G263100 Prunus persica HOM05D004965 ORTHO05D004401 1.3e-17 93.2 95 58.9
Dinv24933 Davidia involucrata HOM05D004965 ORTHO05D004401 1.2e-15 86.7 97 54.6
FAN22G1750 Fragaria x ananassa HOM05D004965 ORTHO05D004401 2.6e-15 85.5 107 50.5
Duzib248G0243 Durio zibethinus HOM05D004965 ORTHO05D004401 7.7e-15 84.0 102 44.1
MD13G1083500 Malus domestica HOM05D004965 ORTHO05D004401 1.7e-14 82.8 104 50.0
Duzib251G0216 Durio zibethinus HOM05D004965 ORTHO05D004401 2.9e-14 82.0 99 45.5
FvH4_4g35400 Fragaria vesca HOM05D004965 ORTHO05D004401 3.8e-14 81.6 104 47.1
Thecc.02G237300 Theobroma cacao HOM05D004965 ORTHO05D004401 3.8e-14 81.6 95 46.3
FAN07G0801 Fragaria x ananassa HOM05D004965 ORTHO05D004401 5.0e-14 81.3 104 47.1
Gorai.002G165000 Gossypium raimondii HOM05D004965 ORTHO05D004401 1.1e-13 80.1 97 44.3
RcHm_v2.0_Chr4g0445011 Rosa chinensis HOM05D004965 ORTHO05D004401 1.1e-13 80.1 103 47.6
CiPaw.05G143500 Carya illinoinensis HOM05D004965 ORTHO05D004401 1.9e-13 79.3 95 49.5
Ciclev10033175m.g Citrus clementina HOM05D004965 ORTHO05D004401 3.2e-13 78.6 95 51.6
CANSAT01G1612 Cannabis sativa HOM05D004965 ORTHO05D004401 4.2e-13 78.2 105 46.7
Gohir.D01G133500 Gossypium hirsutum HOM05D004965 ORTHO05D004401 5.5e-13 77.8 48 70.8
Duzib268G0529 Durio zibethinus HOM05D004965 ORTHO05D004401 7.2e-13 77.4 96 42.7
Gohir.A01G142000 Gossypium hirsutum HOM05D004965 ORTHO05D004401 9.4e-13 77.0 97 43.3
MD16G1082900 Malus domestica HOM05D004965 ORTHO05D004401 1.2e-12 76.6 96 49.0
FAN12G3850 Fragaria x ananassa HOM05D004965 ORTHO05D004401 2.1e-12 75.9 73 56.2
TAR374G1442 Trochodendron aralioides HOM05D004965 ORTHO05D004401 3.6e-12 75.1 94 47.9
Potri.010G039800 Populus trichocarpa HOM05D004965 ORTHO05D004401 4.6e-12 74.7 112 44.6
Aqoxy3G03187 Aquilegia oxysepala HOM05D004965 ORTHO05D004401 7.9e-12 73.9 105 42.9
CiPaw.06G078100 Carya illinoinensis HOM05D004965 ORTHO05D004401 7.9e-12 73.9 95 46.3
TAR629G2889 Trochodendron aralioides HOM05D004965 ORTHO05D004401 1.8e-11 72.8 95 45.3
GSVIVG01020127001 Vitis vinifera HOM05D004965 ORTHO05D004401 2.3e-11 72.4 94 45.7
Cc11_g13890 Coffea canephora HOM05D004965 ORTHO05D004401 3.9e-11 71.6 67 53.7
Gohir.A03G144700 Gossypium hirsutum HOM05D004965 ORTHO05D004401 3.9e-11 71.6 51 66.7
Gohir.D02G167800 Gossypium hirsutum HOM05D004965 ORTHO05D004401 3.9e-11 71.6 51 66.7
Gorai.005G188200 Gossypium raimondii HOM05D004965 ORTHO05D004401 3.9e-11 71.6 51 66.7
Lalb_Chr16g0382641 Lupinus albus HOM05D004965 ORTHO05D004401 3.9e-11 71.6 93 50.5
Glyma.01G038900 Glycine max HOM05D004965 ORTHO05D004401 5.1e-11 71.2 95 46.3
CSS0043755 Camellia sinensis var. sinensis HOM05D004965 ORTHO05D004401 8.8e-11 70.5 94 46.8
Dinv33690 Davidia involucrata HOM05D004965 ORTHO05D004401 1.1e-10 70.1 95 45.3
Glyma.02G025700 Glycine max HOM05D004965 ORTHO05D004401 1.5e-10 69.7 69 55.1
Lj2g0004313 Lotus japonicus HOM05D004965 ORTHO05D004401 1.5e-10 69.7 92 45.7
Lalb_Chr09g0326631 Lupinus albus HOM05D004965 ORTHO05D004401 2.0e-10 69.3 93 41.9
Dinv31145 Davidia involucrata HOM05D004965 ORTHO05D004401 2.5e-10 68.9 96 46.9
TAR369G0013 Trochodendron aralioides HOM05D004965 ORTHO05D004401 3.3e-10 68.6 98 43.9
Atru.chr11.1915 Acer truncatum HOM05D004965 ORTHO05D004401 4.3e-10 68.2 44 75.0
Nn3g17067 Nelumbo nucifera HOM05D004965 ORTHO05D004401 9.7e-10 67.0 52 63.5
vmacro16304 Vaccinium macrocarpon HOM05D004965 ORTHO05D004401 9.7e-10 67.0 91 42.9
PGSC0003DMG400022630 Solanum tuberosum HOM05D004965 ORTHO05D004401 1.7e-09 66.2 100 40.0
Actinidia12285 Actinidia chinensis HOM05D004965 ORTHO05D004401 2.2e-09 65.9 91 48.4
EL10Ac6g13083 Beta vulgaris HOM05D004965 ORTHO05D004401 2.2e-09 65.9 71 49.3
Eucgr.B02578 Eucalyptus grandis HOM05D004965 ORTHO05D004401 2.2e-09 65.9 98 38.8
Lalb_Chr05g0217401 Lupinus albus HOM05D004965 ORTHO05D004401 2.2e-09 65.9 93 41.9
MBI01_g13075_MAGBIO Magnolia biondii HOM05D004965 ORTHO05D004401 2.2e-09 65.9 74 50.0
Phvul.002G079000 Phaseolus vulgaris HOM05D004965 ORTHO05D004401 2.2e-09 65.9 35 85.7
Manes.05G094200 Manihot esculenta HOM05D004965 ORTHO05D004401 2.8e-09 65.5 95 43.2
Potri.008G191500 Populus trichocarpa HOM05D004965 ORTHO05D004401 2.8e-09 65.5 45 73.3
Thecc.04G069500 Theobroma cacao HOM05D004965 ORTHO05D004401 3.7e-09 65.1 37 75.7
arahy.Tifrunner.gnm1.ann1.0GIF91 Arachis hypogaea HOM05D004965 ORTHO05D004401 4.8e-09 64.7 31 93.5
Nn4g22977 Nelumbo nucifera HOM05D004965 ORTHO05D004401 6.3e-09 64.3 38 76.3
PGR119G0489 Punica granatum HOM05D004965 ORTHO05D004401 6.3e-09 64.3 36 80.6
Hund25308 Selenicereus undatus HOM05D004965 ORTHO05D004401 6.3e-09 64.3 48 66.7
MBI04_g09739_MAGBIO Magnolia biondii HOM05D004965 ORTHO05D004401 8.2e-09 63.9 59 57.6
Psat2g116360 Pisum sativum HOM05D004965 ORTHO05D004401 8.2e-09 63.9 59 55.9
Duzib187G0871 Durio zibethinus HOM05D004965 ORTHO05D004401 1.1e-08 63.5 44 63.6
CSS0014777 Camellia sinensis var. sinensis HOM05D004965 ORTHO05D004401 1.4e-08 63.2 85 42.4
Medtr5g037140 Medicago truncatula HOM05D004965 ORTHO05D004401 1.4e-08 63.2 31 90.3
Gohir.A07G216700 Gossypium hirsutum HOM05D004965 ORTHO05D004401 1.8e-08 62.8 97 37.1
QL02p079418 Quercus lobata HOM05D004965 ORTHO05D004401 2.4e-08 62.4 97 39.2
Cpa.g.sc14.63 Carica papaya HOM05D004965 ORTHO05D004401 4.1e-08 61.6 98 37.8
Gohir.D07G223500 Gossypium hirsutum HOM05D004965 ORTHO05D004401 4.1e-08 61.6 97 37.1
Gorai.001G257800 Gossypium raimondii HOM05D004965 ORTHO05D004401 4.1e-08 61.6 97 37.1
TWI36G1294 Tripterygium wilfordii HOM05D004965 ORTHO05D004401 4.1e-08 61.6 101 39.6
MSTRG.2369 Avicennia marina HOM05D004965 ORTHO05D004401 5.3e-08 61.2 33 81.8
Sabra10G0027200 Salix brachista HOM05D004965 ORTHO05D004401 5.3e-08 61.2 94 42.6
CiPaw.03G032200 Carya illinoinensis HOM05D004965 ORTHO05D004401 6.9e-08 60.8 93 40.9
TWI36G1686 Tripterygium wilfordii HOM05D004965 ORTHO05D004401 9.1e-08 60.5 114 38.6
COL.COLO4_36990 Corchorus olitorius HOM05D004965 ORTHO05D004401 1.2e-07 60.1 34 76.5
Lsat_1_v5_gn_8_161261 Lactuca sativa HOM05D004965 ORTHO05D004401 1.2e-07 60.1 38 76.3
Sed0010056 Sechium edule HOM05D031204 ORTHO05D004401 1.2e-07 60.1 102 38.2
CSS0011493 Camellia sinensis var. sinensis HOM05D004965 ORTHO05D004401 1.5e-07 59.7 89 40.4
DCAR_006716 Daucus carota HOM05D004965 ORTHO05D004401 2.0e-07 59.3 52 53.8
Manes.15G177900 Manihot esculenta HOM05D004965 ORTHO05D004401 2.0e-07 59.3 47 61.7
PGSC0003DMG400004191 Solanum tuberosum HOM05D004965 ORTHO05D004401 2.0e-07 59.3 93 36.6
TWI56G0241 Tripterygium wilfordii HOM05D004965 ORTHO05D004401 2.0e-07 59.3 96 38.5
CiPaw.04G021200 Carya illinoinensis HOM05D004965 ORTHO05D004401 2.6e-07 58.9 95 37.9
TAR622G1192 Trochodendron aralioides HOM05D004965 ORTHO05D004401 2.6e-07 58.9 84 45.2
Haze_14606 Corylus avellana HOM05D004965 ORTHO05D004401 3.4e-07 58.5 97 42.3
DCAR_026576 Daucus carota HOM05D004965 ORTHO05D004401 3.4e-07 58.5 42 59.5
SalBow8G5011 Salvia bowleyana HOM05D004965 ORTHO05D004401 4.5e-07 58.2 50 52.0
ECA246G4714 Erigeron canadensis HOM05D004965 ORTHO05D004401 5.9e-07 57.8 32 78.1
Lju41A28T116 Lonicera japonica HOM05D004965 ORTHO05D004401 5.9e-07 57.8 35 74.3
Solyc05g006610.4 Solanum lycopersicum HOM05D004965 ORTHO05D004401 5.9e-07 57.8 37 70.3
Sopen05g002550 Solanum pennellii HOM05D004965 ORTHO05D004401 5.9e-07 57.8 37 70.3
Atru.chr8.2466 Acer truncatum HOM05D004965 ORTHO05D004401 7.7e-07 57.4 35 68.6
FAN17G0917 Fragaria x ananassa HOM05D004965 ORTHO05D004401 1.0e-06 57.0 91 39.6
Psat1g077560 Pisum sativum HOM05D004965 ORTHO05D004401 1.0e-06 57.0 93 39.8
Potri.017G074600 Populus trichocarpa HOM05D004965 ORTHO05D004401 1.0e-06 57.0 46 54.3
PGR083G1219 Punica granatum HOM05D004965 ORTHO05D004401 1.0e-06 57.0 95 40.0
Actinidia06052 Actinidia chinensis HOM05D004965 ORTHO05D004401 1.3e-06 56.6 94 40.4
Sp5g25080 Schrenkiella parvula HOM05D010176 ORTHO05D012455 1.3e-06 56.6 73 49.3
CDE04G1822 Ceratophyllum demersum HOM05D004965 ORTHO05D004401 1.7e-06 56.2 92 39.1
TPR.G32595 Trifolium pratense HOM05D004965 ORTHO05D004401 1.7e-06 56.2 93 38.7
AT1G69970 Arabidopsis thaliana HOM05D010176 ORTHO05D012455 2.2e-06 55.8 51 58.8
CANSAT64G1053 Cannabis sativa HOM05D004965 ORTHO05D004401 2.2e-06 55.8 102 35.3
Sc04g0008760 Simmondsia chinensis HOM05D004965 ORTHO05D004401 2.2e-06 55.8 35 74.3
TWI75G1371 Tripterygium wilfordii HOM05D004965 ORTHO05D004401 2.2e-06 55.8 112 38.4
MELO3C012043.2 Cucumis melo HOM05D031204 ORTHO05D004401 3.8e-06 55.1 105 39.0
Aqoxy3G00848 Aquilegia oxysepala HOM05D004965 ORTHO05D004401 5.0e-06 54.7 43 65.1
Cpa.g.sc5.310 Carica papaya HOM05D004965 ORTHO05D004401 5.0e-06 54.7 85 40.0
ECA232G4812 Erigeron canadensis HOM05D006434 ORTHO05D008069 5.0e-06 54.7 54 55.6
Solyc01g011105.1 Solanum lycopersicum HOM05D004965 ORTHO05D004401 5.0e-06 54.7 41 61.0
HanXRQChr08g0209111 Helianthus annuus HOM05D004965 ORTHO05D004401 6.5e-06 54.3 29 82.8
BcaC08g45847 Brassica carinata HOM05D010176 ORTHO05D012455 8.5e-06 53.9 28 89.3


User provided reference genes

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