Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG08G008840 Citrullus lanatus HOM05D005519 ORTHO05D006423 2.3e-73 279.3 189 100.0
CsaV3_6G005050 Cucumis sativus L. HOM05D005519 ORTHO05D006423 1.2e-58 230.3 189 85.7
Sed0015682 Sechium edule HOM05D005519 ORTHO05D006423 8.6e-57 224.2 185 78.9
Cfa018287 Carpinus fangiana HOM05D005519 ORTHO05D006423 2.4e-51 206.1 197 73.6
Sed0018725 Sechium edule HOM05D005519 ORTHO05D006423 7.1e-51 204.5 188 64.4
CiPaw.15G012900 Carya illinoinensis HOM05D005519 ORTHO05D006423 1.7e-49 199.9 195 66.2
VMungo0720G0436 Vigna mungo HOM05D005519 ORTHO05D006423 3.9e-49 198.7 151 74.8
Glyma.02G079400 Glycine max HOM05D005519 ORTHO05D006423 5.1e-49 198.4 198 62.1
Glyma.16G163800 Glycine max HOM05D005519 ORTHO05D006423 5.1e-49 198.4 199 59.8
CiPaw.16G008800 Carya illinoinensis HOM05D005519 ORTHO05D006423 1.1e-48 197.2 149 77.2
Potri.005G196100 Populus trichocarpa HOM05D005519 ORTHO05D006423 1.5e-48 196.8 198 73.7
Glyma.10G222100 Glycine max HOM05D005519 ORTHO05D006423 3.3e-48 195.7 190 60.5
Glyma.20G169500 Glycine max HOM05D005519 ORTHO05D006423 5.6e-48 194.9 190 60.5
QL02p037831 Quercus lobata HOM05D005519 ORTHO05D006423 1.6e-47 193.4 151 72.2
arahy.Tifrunner.gnm1.ann1.8F5AL7 Arachis hypogaea HOM05D005519 ORTHO05D006423 2.1e-47 193.0 200 64.5
Phvul.004G091300 Phaseolus vulgaris HOM05D005519 ORTHO05D006423 2.8e-47 192.6 199 60.8
arahy.Tifrunner.gnm1.ann1.SKG6R6 Arachis hypogaea HOM05D005519 ORTHO05D006423 3.6e-47 192.2 200 64.0
Haze_17800 Corylus avellana HOM05D005519 ORTHO05D006423 6.2e-47 191.4 194 73.7
TPR.G17016 Trifolium pratense HOM05D005519 ORTHO05D006423 8.1e-47 191.0 150 76.7
Sabra05G0149500 Salix brachista HOM05D005519 ORTHO05D006423 1.1e-46 190.7 196 73.5
Manes.02G182800 Manihot esculenta HOM05D005519 ORTHO05D006423 1.4e-46 190.3 197 73.6
TWI32G0061 Tripterygium wilfordii HOM05D005519 ORTHO05D006423 1.4e-46 190.3 145 69.0
Potri.002G065000 Populus trichocarpa HOM05D005519 ORTHO05D006423 2.4e-46 189.5 198 66.2
QL02p038173 Quercus lobata HOM05D005519 ORTHO05D006423 2.4e-46 189.5 156 75.0
CANSAT25G1666 Cannabis sativa HOM05D005519 ORTHO05D006423 3.1e-46 189.1 190 66.8
VMungo0464G1678 Vigna mungo HOM05D005519 ORTHO05D006423 3.1e-46 189.1 201 68.7
Prupe.8G039900 Prunus persica HOM05D005519 ORTHO05D006423 4.0e-46 188.7 154 78.6
Phvul.007G083000 Phaseolus vulgaris HOM05D005519 ORTHO05D006423 8.9e-46 187.6 146 69.9
TWI34G0476 Tripterygium wilfordii HOM05D005519 ORTHO05D006423 1.5e-45 186.8 145 75.9
Manes.18G094400 Manihot esculenta HOM05D005519 ORTHO05D006423 2.6e-45 186.0 197 70.6
Nn5g28816 Nelumbo nucifera HOM05D005519 ORTHO05D006423 2.6e-45 186.0 155 73.5
Hma1.2p1_0358F.1_g134710 Hydrangea macrophylla HOM05D005519 ORTHO05D006423 3.4e-45 185.7 154 70.8
Peaxi162Scf00160g01746 Petunia axillaris HOM05D005519 ORTHO05D006423 4.4e-45 185.3 144 77.8
TAR381G0167 Trochodendron aralioides HOM05D005519 ORTHO05D006423 1.3e-44 183.7 147 70.7
MD05G1032800 Malus domestica HOM05D005519 ORTHO05D006423 1.7e-44 183.3 154 70.8
Ca_10667_v3 Cicer arietinum L. HOM05D005519 ORTHO05D006423 2.2e-44 183.0 147 64.6
Thecc.08G158600 Theobroma cacao HOM05D005519 ORTHO05D006423 2.9e-44 182.6 193 73.1
unitig_26.g9895 Utricularia gibba HOM05D005519 ORTHO05D006423 2.9e-44 182.6 146 74.7
Dinv25895 Davidia involucrata HOM05D005519 ORTHO05D006423 3.8e-44 182.2 150 80.7
Duzib093G1843 Durio zibethinus HOM05D005519 ORTHO05D006423 3.8e-44 182.2 200 64.0
Lj5g0019555 Lotus japonicus HOM05D005519 ORTHO05D006423 3.8e-44 182.2 199 62.3
Gohir.A05G246000 Gossypium hirsutum HOM05D005519 ORTHO05D006423 4.9e-44 181.8 202 63.4
Nitab4.5_0001103g0040 Nicotiana tabacum HOM05D005519 ORTHO05D006423 4.9e-44 181.8 146 71.9
Psat6g190880 Pisum sativum HOM05D005519 ORTHO05D006423 4.9e-44 181.8 192 56.8
Gohir.D02G068600 Gossypium hirsutum HOM05D005519 ORTHO05D006423 6.4e-44 181.4 189 68.3
MSTRG.25301 Avicennia marina HOM05D005519 ORTHO05D006423 8.4e-44 181.0 149 80.5
Gorai.005G077500 Gossypium raimondii HOM05D005519 ORTHO05D006423 1.1e-43 180.6 189 67.7
Cc10_g15180 Coffea canephora HOM05D005519 ORTHO05D006423 1.4e-43 180.3 154 76.0
Thhalv10008704m.g Eutrema salsugineum HOM05D005519 ORTHO05D006423 1.4e-43 180.3 147 74.8
Gohir.D05G247500 Gossypium hirsutum HOM05D005519 ORTHO05D006423 1.9e-43 179.9 202 63.4
Nitab4.5_0000872g0010 Nicotiana tabacum HOM05D005519 ORTHO05D006423 1.9e-43 179.9 146 75.3
Gorai.009G258300 Gossypium raimondii HOM05D005519 ORTHO05D006423 2.4e-43 179.5 202 63.4
Sabra02G0051900 Salix brachista HOM05D005519 ORTHO05D006423 3.2e-43 179.1 198 65.7
Aa31LG6G8220 Aethionema arabicum HOM05D005519 ORTHO05D006423 4.2e-43 178.7 152 75.7
BolC6t36346H Brassica oleracea HOM05D005519 ORTHO05D006423 4.2e-43 178.7 148 72.3
Medtr1g098280 Medicago truncatula HOM05D005519 ORTHO05D006423 4.2e-43 178.7 149 69.8
PGR042G3808 Punica granatum HOM05D005519 ORTHO05D006423 4.2e-43 178.7 159 74.2
PGSC0003DMG400018793 Solanum tuberosum HOM05D005519 ORTHO05D006423 4.2e-43 178.7 143 67.8
THA.LOC104806763 Tarenaya hassleriana HOM05D005519 ORTHO05D006423 4.2e-43 178.7 149 75.8
Lsat_1_v5_gn_9_42101 Lactuca sativa HOM05D005519 ORTHO05D006423 5.4e-43 178.3 146 74.7
Cpa.g.sc49.79 Carica papaya HOM05D005519 ORTHO05D006423 7.1e-43 177.9 139 77.7
Lj7A382T71 Lonicera japonica HOM05D005519 ORTHO05D006423 7.1e-43 177.9 147 72.8
BcaC08g43825 Brassica carinata HOM05D005519 ORTHO05D006423 9.2e-43 177.6 148 71.6
BraA09t38789Z Brassica rapa HOM05D005519 ORTHO05D006423 9.2e-43 177.6 148 75.7
CAN.G26.8 Capsicum annuum HOM05D005519 ORTHO05D006423 9.2e-43 177.6 150 74.0
Duzib116G0927 Durio zibethinus HOM05D005519 ORTHO05D006423 1.2e-42 177.2 150 67.3
MD10G1033800 Malus domestica HOM05D005519 ORTHO05D006423 1.2e-42 177.2 153 71.2
Lj2g0026694 Lotus japonicus HOM05D005519 ORTHO05D006423 1.6e-42 176.8 146 76.7
Sc26g0002910 Simmondsia chinensis HOM05D005519 ORTHO05D006423 1.6e-42 176.8 154 74.0
THA.LOC104825113 Tarenaya hassleriana HOM05D005519 ORTHO05D006423 1.6e-42 176.8 155 72.3
Lalb_Chr03g0035541 Lupinus albus HOM05D005519 ORTHO05D006423 2.7e-42 176.0 147 66.7
vmacro01488 Vaccinium macrocarpon HOM05D005519 ORTHO05D006423 2.7e-42 176.0 160 70.0
Lsat_1_v5_gn_6_101660 Lactuca sativa HOM05D005519 ORTHO05D006423 4.6e-42 175.3 156 69.9
RcHm_v2.0_Chr6g0274331 Rosa chinensis HOM05D005519 ORTHO05D006423 6.0e-42 174.9 140 77.9
PGSC0003DMG400025068 Solanum tuberosum HOM05D005519 ORTHO05D006423 6.0e-42 174.9 148 75.0
AL1G48440 Arabidopsis lyrata HOM05D005519 ORTHO05D006423 1.3e-41 173.7 148 73.0
SGA_v2.0_scaffold108G30869 Striga asiatica HOM05D005519 ORTHO05D006423 1.3e-41 173.7 137 77.4
BcaB04g17909 Brassica carinata HOM05D005519 ORTHO05D006423 2.3e-41 172.9 151 70.9
FvH4_2g13070 Fragaria vesca HOM05D005519 ORTHO05D006423 2.3e-41 172.9 151 74.8
Lalb_Chr19g0130091 Lupinus albus HOM05D005519 ORTHO05D006423 2.3e-41 172.9 192 55.2
Sopen12g029280 Solanum pennellii HOM05D005519 ORTHO05D006423 2.3e-41 172.9 144 65.3
CSS0002205 Camellia sinensis var. sinensis HOM05D005519 ORTHO05D006423 5.1e-41 171.8 143 77.6
Nitab4.5_0002812g0030 Nicotiana tabacum HOM05D005519 ORTHO05D006423 5.1e-41 171.8 145 77.9
AT1G34000 Arabidopsis thaliana HOM05D005519 ORTHO05D006423 6.6e-41 171.4 148 72.3
A09p32470 Brassica napus HOM05D005519 ORTHO05D006423 6.6e-41 171.4 148 74.3
Carub.0001s3208 Capsella rubella HOM05D005519 ORTHO05D006423 8.7e-41 171.0 149 72.5
Solyc12g056620.2 Solanum lycopersicum HOM05D005519 ORTHO05D006423 8.7e-41 171.0 148 64.9
DCAR_001160 Daucus carota HOM05D005519 ORTHO05D006423 1.1e-40 170.6 149 64.4
BcaB07g33022 Brassica carinata HOM05D005519 ORTHO05D006423 1.5e-40 170.2 149 75.2
CAN.G495.8 Capsicum annuum HOM05D005519 ORTHO05D006423 1.5e-40 170.2 151 74.2
FAN15G1092 Fragaria x ananassa HOM05D003947 ORTHO05D004614 1.5e-40 170.2 136 80.1
Lj4A703G50 Lonicera japonica HOM05D005519 ORTHO05D006423 1.5e-40 170.2 150 74.7
Peaxi162Scf00360g00028 Petunia axillaris HOM05D005519 ORTHO05D006423 1.5e-40 170.2 137 77.4
C06p12090 Brassica napus HOM05D005519 ORTHO05D006423 1.9e-40 169.9 147 73.5
MBI04_g08940_MAGBIO Magnolia biondii HOM05D005519 ORTHO05D006423 1.9e-40 169.9 139 79.1
HanXRQChr11g0320251 Helianthus annuus HOM05D005519 ORTHO05D006423 2.5e-40 169.5 153 72.5
Migut.C00964 Erythranthe guttata HOM05D005519 ORTHO05D006423 3.3e-40 169.1 189 59.3
Sopen04g027910 Solanum pennellii HOM05D005519 ORTHO05D006423 5.6e-40 168.3 191 59.7
A08p08390 Brassica napus HOM05D005519 ORTHO05D006423 9.6e-40 167.5 149 71.8
BraA08t32855Z Brassica rapa HOM05D005519 ORTHO05D006423 9.6e-40 167.5 149 71.8
Solyc04g071930.4 Solanum lycopersicum HOM05D005519 ORTHO05D006423 9.6e-40 167.5 194 62.4
Nitab4.5_0000099g0170 Nicotiana tabacum HOM05D005519 ORTHO05D006423 1.2e-39 167.2 136 81.6
Migut.N03201 Erythranthe guttata HOM05D005519 ORTHO05D006423 2.1e-39 166.4 142 74.6
PSO541G5828 Papaver somniferum HOM05D005519 ORTHO05D006423 2.1e-39 166.4 153 57.5
CARHR033380 Cardamine hirsuta HOM05D005519 ORTHO05D006423 6.2e-39 164.9 152 73.0
FAN24G1125 Fragaria x ananassa HOM05D003947 ORTHO05D004614 6.2e-39 164.9 136 76.5
PSO675G0400 Papaver somniferum HOM05D005519 ORTHO05D006423 6.2e-39 164.9 154 66.2
Rhsim11G0087200 Rhododendron simsii HOM05D005519 ORTHO05D006423 8.1e-39 164.5 154 70.1
Atru.chr13.2018 Acer truncatum HOM05D005519 ORTHO05D006423 1.4e-38 163.7 191 64.9
BolC8t47881H Brassica oleracea HOM05D005519 ORTHO05D006423 1.8e-38 163.3 152 71.7
Sp1g29260 Schrenkiella parvula HOM05D005519 ORTHO05D006423 4.0e-38 162.2 182 61.0
Ciclev10002625m.g Citrus clementina HOM05D005519 ORTHO05D006423 9.0e-38 161.0 156 69.2
Ah.05g168160 Amaranthus hybridus HOM05D005519 ORTHO05D006423 3.4e-37 159.1 197 58.9
HPP92_000679 Vanilla planifolia HOM05D005519 ORTHO05D006423 9.9e-37 157.5 161 60.2
ATR0580G316 Amborella trichopoda HOM05D005519 ORTHO05D006423 2.9e-36 156.0 153 67.3
FAN27G0467 Fragaria x ananassa HOM05D005519 ORTHO05D006423 8.4e-36 154.5 155 66.5
GSVIVG01034578001 Vitis vinifera HOM05D005519 ORTHO05D006423 8.4e-36 154.5 83 89.2
CDE04G2354 Ceratophyllum demersum HOM05D005519 ORTHO05D006423 7.1e-35 151.4 142 64.8
ECA246G0665 Erigeron canadensis HOM05D003947 ORTHO05D006423 9.3e-35 151.0 83 86.7
MELO3C029825.2 Cucumis melo HOM05D005519 ORTHO05D006423 1.6e-34 150.2 165 80.0
Nn1g06007 Nelumbo nucifera HOM05D005519 ORTHO05D006423 2.7e-34 149.4 136 75.7
Zm00001eb357520 Zea mays HOM05D005519 ORTHO05D006423 1.0e-33 147.5 211 54.5
Zm00001eb160790 Zea mays HOM05D005519 ORTHO05D006423 2.3e-33 146.4 215 51.6
AUR62026639 Chenopodium quinoa HOM05D003947 ORTHO05D004614 3.9e-33 145.6 88 79.5
MSTRG.1105 Avicennia marina HOM05D000084 ORTHO05D006423 1.1e-32 144.1 179 59.2
Os01g0589800 Oryza sativa ssp. japonica HOM05D005519 ORTHO05D006423 1.5e-29 133.7 70 90.0
AUR62034898 Chenopodium quinoa HOM05D005519 ORTHO05D006423 9.9e-29 131.0 75 82.7
COL.COLO4_03361 Corchorus olitorius HOM05D005519 ORTHO05D006423 3.8e-28 129.0 69 82.6
AagrBONN_evm.TU.Sc2ySwM_117.629 Anthoceros agrestis HOM05D005519 ORTHO05D006423 2.7e-26 122.9 145 60.7
Dinv41044 Davidia involucrata HOM05D005519 ORTHO05D006423 2.5e-24 116.3 111 74.8
Mapoly0065s0010 Marchantia polymorpha HOM05D005519 ORTHO05D006423 1.8e-22 110.2 82 63.4
SMO139G0065 Selaginella moellendorffii HOM05D005519 ORTHO05D006423 2.4e-22 109.8 153 56.9
Actinidia17771 Actinidia chinensis HOM05D005519 ORTHO05D006423 2.6e-21 106.3 105 56.2
A05p24090 Brassica napus HOM05D011378 ORTHO05D006423 6.4e-20 101.7 59 81.4
CBR_g32244 Chara braunii HOM05D005519 ORTHO05D006423 1.4e-19 100.5 80 58.8
Oeu051280.1 Olea europaea HOM05D005519 ORTHO05D006423 2.5e-19 99.8 123 64.2
BraA05t21288Z Brassica rapa HOM05D003947 ORTHO05D006423 9.3e-19 97.8 64 76.6
Hund30143 Selenicereus undatus HOM05D005519 ORTHO05D006423 6.0e-18 95.1 141 57.4
Cre06.g251150 Chlamydomonas reinhardtii HOM05D005519 ORTHO05D006423 1.3e-17 94.0 82 54.9
MCO05G699 Micromonas commoda HOM05D005519 ORTHO05D006423 2.3e-17 93.2 80 51.2
CSS0025090 Camellia sinensis var. sinensis HOM05D005519 ORTHO05D006423 1.6e-15 87.0 50 84.0
Eucgr.L00901 Eucalyptus grandis HOM05D005519 ORTHO05D006423 3.1e-14 82.8 114 64.0
PRCOL_00003386 Prasinoderma coloniale HOM05D005519 ORTHO05D006423 9.3e-11 71.2 67 55.2
Pp3c1_8300 Physcomitrium patens HOM05D005519 ORTHO05D006423 4.3e-08 62.4 39 66.7
Pp3c2_26700 Physcomitrium patens HOM05D005519 ORTHO05D006423 2.4e-06 56.6 107 52.3
unitig_749.g13910 Utricularia gibba HOM05D005519 ORTHO05D006423 9.0e-06 54.7 80 43.8


User provided reference genes

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