Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG08G008320 Citrullus lanatus HOM05D006601 ORTHO05D008281 3.8e-91 338.6 227 100.0
MELO3C019900.2 Cucumis melo HOM05D006601 ORTHO05D008281 2.2e-83 312.8 161 95.0
CsaV3_6G004290 Cucumis sativus L. HOM05D006601 ORTHO05D008281 7.1e-82 307.8 161 93.2
Sed0022988 Sechium edule HOM05D006601 ORTHO05D008281 1.3e-78 297.0 161 90.7
Cfa010329 Carpinus fangiana HOM05D006601 ORTHO05D008281 4.1e-69 265.4 162 81.5
CiPaw.13G041000 Carya illinoinensis HOM05D006601 ORTHO05D008281 1.2e-68 263.8 162 79.6
CSS0000414 Camellia sinensis var. sinensis HOM05D006601 ORTHO05D008281 2.2e-67 259.6 147 85.7
Eucgr.J00269 Eucalyptus grandis HOM05D006601 ORTHO05D008281 3.8e-67 258.8 162 77.2
GSVIVG01010682001 Vitis vinifera HOM05D006601 ORTHO05D008281 1.4e-66 256.9 161 81.4
Rhsim09G0141800 Rhododendron simsii HOM05D006601 ORTHO05D008281 1.9e-66 256.5 146 84.9
MD06G1038200 Malus domestica HOM05D006601 ORTHO05D008281 3.2e-66 255.8 162 77.2
Glyma.01G052400 Glycine max HOM05D006601 ORTHO05D008281 4.2e-66 255.4 162 77.8
RcHm_v2.0_Chr6g0269151 Rosa chinensis HOM05D006601 ORTHO05D008281 5.5e-66 255.0 162 76.5
Glyma.02G110700 Glycine max HOM05D006601 ORTHO05D008281 9.3e-66 254.2 162 77.2
FvH4_2g10940 Fragaria vesca HOM05D006601 ORTHO05D008281 1.6e-65 253.4 162 76.5
FAN24G1745 Fragaria x ananassa HOM05D006601 ORTHO05D008281 1.6e-65 253.4 162 76.5
Lj2g0012177 Lotus japonicus HOM05D006601 ORTHO05D008281 2.1e-65 253.1 162 77.2
Duzib114G0052 Durio zibethinus HOM05D006601 ORTHO05D008281 2.7e-65 252.7 162 76.5
HanXRQChr11g0321661 Helianthus annuus HOM05D006601 ORTHO05D008281 2.7e-65 252.7 164 76.8
Phvul.002G091600 Phaseolus vulgaris HOM05D006601 ORTHO05D008281 2.7e-65 252.7 162 75.9
Potri.008G019100 Populus trichocarpa HOM05D006601 ORTHO05D008281 2.7e-65 252.7 145 84.8
Potri.010G240300 Populus trichocarpa HOM05D006601 ORTHO05D008281 2.7e-65 252.7 162 77.2
Thecc.10G114200 Theobroma cacao HOM05D006601 ORTHO05D008281 3.5e-65 252.3 160 77.5
Gohir.A05G287400 Gossypium hirsutum HOM05D006601 ORTHO05D008281 4.6e-65 251.9 162 76.5
Lsat_1_v5_gn_0_8161 Lactuca sativa HOM05D006601 ORTHO05D008281 6.1e-65 251.5 150 80.0
MBI17_g13115_MAGBIO Magnolia biondii HOM05D006601 ORTHO05D008281 6.1e-65 251.5 144 82.6
Gohir.D05G288500 Gossypium hirsutum HOM05D006601 ORTHO05D008281 7.9e-65 251.1 162 75.9
Gorai.009G303600 Gossypium raimondii HOM05D006601 ORTHO05D008281 7.9e-65 251.1 162 75.9
Manes.10G062700 Manihot esculenta HOM05D006601 ORTHO05D008281 7.9e-65 251.1 161 78.9
Dinv12840 Davidia involucrata HOM05D006601 ORTHO05D008281 1.3e-64 250.4 161 78.9
Lalb_Chr10g0098441 Lupinus albus HOM05D006601 ORTHO05D008281 2.3e-64 249.6 162 75.9
Atru.chr12.1047 Acer truncatum HOM05D006601 ORTHO05D008281 3.0e-64 249.2 160 76.2
ECA232G0968 Erigeron canadensis HOM05D006601 ORTHO05D008281 3.9e-64 248.8 151 80.8
QL04p046797 Quercus lobata HOM05D006601 ORTHO05D008281 5.1e-64 248.4 161 75.8
QL04p047245 Quercus lobata HOM05D006601 ORTHO05D008281 5.1e-64 248.4 161 75.8
Prupe.5G030400 Prunus persica HOM05D006601 ORTHO05D008281 8.7e-64 247.7 162 75.3
COL.COLO4_03655 Corchorus olitorius HOM05D006601 ORTHO05D008281 2.5e-63 246.1 159 76.1
RcHm_v2.0_Chr2g0160691 Rosa chinensis HOM05D006601 ORTHO05D008281 3.3e-63 245.7 162 74.7
arahy.Tifrunner.gnm1.ann1.VBS9AQ Arachis hypogaea HOM05D006601 ORTHO05D008281 5.7e-63 245.0 163 76.7
DCAR_006335 Daucus carota HOM05D006601 ORTHO05D008281 7.4e-63 244.6 146 80.1
Cc02_g09570 Coffea canephora HOM05D006601 ORTHO05D008281 9.7e-63 244.2 143 83.2
Hund22273 Selenicereus undatus HOM05D006601 ORTHO05D008281 9.7e-63 244.2 154 77.9
PSO339G2358 Papaver somniferum HOM05D006601 ORTHO05D008281 1.3e-62 243.8 150 80.7
PGR044G2546 Punica granatum HOM05D006601 ORTHO05D008281 1.3e-62 243.8 162 73.5
THA.LOC104823558 Tarenaya hassleriana HOM05D006601 ORTHO05D008281 2.2e-62 243.0 145 81.4
SGA_v2.0_scaffold62G21313 Striga asiatica HOM05D006601 ORTHO05D008281 3.7e-62 242.3 162 74.7
TAR633G2162 Trochodendron aralioides HOM05D006601 ORTHO05D008281 4.8e-62 241.9 148 79.1
Oeu030223.2 Olea europaea HOM05D006601 ORTHO05D008281 8.2e-62 241.1 158 77.8
TWI38G1517 Tripterygium wilfordii HOM05D006601 ORTHO05D008281 8.2e-62 241.1 158 74.7
Ca_04833_v3 Cicer arietinum L. HOM05D006601 ORTHO05D008281 1.1e-61 240.7 152 78.9
vmacro10311 Vaccinium macrocarpon HOM05D006601 ORTHO05D008281 1.1e-61 240.7 168 71.4
CAN.G1417.5 Capsicum annuum HOM05D006601 ORTHO05D008281 1.4e-61 240.4 144 79.9
Sp5g10040 Schrenkiella parvula HOM05D006601 ORTHO05D008281 1.8e-61 240.0 150 77.3
Nitab4.5_0009484g0010 Nicotiana tabacum HOM05D006601 ORTHO05D008281 2.4e-61 239.6 144 79.9
Migut.F00866 Erythranthe guttata HOM05D006601 ORTHO05D008281 3.1e-61 239.2 163 74.2
Psat2g116120 Pisum sativum HOM05D006601 ORTHO05D008281 3.1e-61 239.2 162 72.2
Oeu026608.1 Olea europaea HOM05D006601 ORTHO05D008281 4.1e-61 238.8 143 81.1
A09p45280 Brassica napus HOM05D006601 ORTHO05D008281 5.3e-61 238.4 150 75.3
BraA09t39991Z Brassica rapa HOM05D006601 ORTHO05D008281 5.3e-61 238.4 150 75.3
Medtr5g042160 Medicago truncatula HOM05D006601 ORTHO05D008281 6.9e-61 238.0 162 72.8
Thhalv10010678m.g Eutrema salsugineum HOM05D006601 ORTHO05D008281 9.0e-61 237.7 150 76.7
Ciclev10016593m.g Citrus clementina HOM05D006601 ORTHO05D008281 1.5e-60 236.9 162 73.5
Carub.0005s1858 Capsella rubella HOM05D006601 ORTHO05D008281 2.6e-60 236.1 149 76.5
AL5G32810 Arabidopsis lyrata HOM05D006601 ORTHO05D008281 4.5e-60 235.3 149 76.5
AT3G52220 Arabidopsis thaliana HOM05D006601 ORTHO05D008281 4.5e-60 235.3 149 76.5
Peaxi162Scf00125g00234 Petunia axillaris HOM05D006601 ORTHO05D008281 4.5e-60 235.3 144 77.1
Solyc11g006760.3 Solanum lycopersicum HOM05D006601 ORTHO05D008281 4.5e-60 235.3 144 78.5
Sopen11g002690 Solanum pennellii HOM05D006601 ORTHO05D008281 4.5e-60 235.3 144 78.5
PGSC0003DMG400023966 Solanum tuberosum HOM05D006601 ORTHO05D008281 4.5e-60 235.3 144 78.5
CARHR161980 Cardamine hirsuta HOM05D006601 ORTHO05D008281 5.9e-60 235.0 149 75.8
Aqoxy2G01120 Aquilegia oxysepala HOM05D006601 ORTHO05D008281 2.9e-59 232.6 146 78.8
C08p27460 Brassica napus HOM05D006601 ORTHO05D008281 2.9e-59 232.6 147 74.8
BolC8t50363H Brassica oleracea HOM05D006601 ORTHO05D008281 2.9e-59 232.6 147 74.8
MSTRG.9054 Avicennia marina HOM05D006601 ORTHO05D008281 3.8e-59 232.3 143 78.3
AUR62041519 Chenopodium quinoa HOM05D006601 ORTHO05D008281 3.8e-59 232.3 158 73.4
SalBow3G0796 Salvia bowleyana HOM05D006601 ORTHO05D008281 3.8e-59 232.3 145 77.2
FAN15G0841 Fragaria x ananassa HOM05D006601 ORTHO05D008281 5.0e-59 231.9 164 70.7
Os08g0558700 Oryza sativa ssp. japonica HOM05D006601 ORTHO05D008281 8.5e-59 231.1 143 77.6
TPR.G31604 Trifolium pratense HOM05D006601 ORTHO05D008281 8.5e-59 231.1 134 83.6
unitig_899.g14469 Utricularia gibba HOM05D006601 ORTHO05D008281 4.2e-58 228.8 131 82.4
Lj3A925T73 Lonicera japonica HOM05D006601 ORTHO05D008281 2.1e-57 226.5 147 76.2
HPP92_000012 Vanilla planifolia HOM05D006601 ORTHO05D008281 2.7e-57 226.1 150 72.7
FAN20G1775 Fragaria x ananassa HOM05D006601 ORTHO05D008281 1.4e-56 223.8 133 82.0
Sabra10G0188100 Salix brachista HOM05D006601 ORTHO05D008281 2.3e-56 223.0 224 56.2
Aa31LG10G7330 Aethionema arabicum HOM05D006601 ORTHO05D008281 5.1e-56 221.9 187 62.6
Nn6g34864 Nelumbo nucifera HOM05D006601 ORTHO05D008281 5.1e-56 221.9 132 81.8
arahy.Tifrunner.gnm1.ann1.0XG3CD Arachis hypogaea HOM05D006601 ORTHO05D008281 2.4e-53 213.0 163 69.9
TWI63G1188 Tripterygium wilfordii HOM05D006601 ORTHO05D008281 9.1e-53 211.1 147 71.4
SEGI_26123 Sequoiadendron giganteum HOM05D006601 ORTHO05D008281 5.9e-52 208.4 136 73.5
ATR0776G086 Amborella trichopoda HOM05D006601 ORTHO05D008281 1.0e-43 181.0 147 63.3
Pp3c1_22490 Physcomitrium patens HOM05D006601 ORTHO05D008281 1.7e-43 180.3 139 62.6
SMO367G0990 Selaginella moellendorffii HOM05D006601 ORTHO05D008281 1.7e-43 180.3 160 58.8
Mapoly0044s0087 Marchantia polymorpha HOM05D006601 ORTHO05D008281 5.5e-42 175.3 135 60.7
CDE04G0959 Ceratophyllum demersum HOM05D006601 ORTHO05D008281 8.0e-41 171.4 162 55.6
Haze_03300 Corylus avellana HOM05D006601 ORTHO05D008281 1.1e-39 167.5 118 74.6
Actinidia31106 Actinidia chinensis HOM05D006601 ORTHO05D008281 6.3e-38 161.8 91 82.4
AUR62042084 Chenopodium quinoa HOM05D006601 ORTHO05D008281 1.1e-34 151.0 158 55.1
BcaC07g39592 Brassica carinata HOM05D006601 ORTHO05D008281 7.2e-34 148.3 153 54.2
Nitab4.5_0002586g0010 Nicotiana tabacum HOM05D006601 ORTHO05D008281 9.4e-34 147.9 101 75.2
Sc09g0005300 Simmondsia chinensis HOM05D006601 ORTHO05D008281 8.0e-33 144.8 104 73.1
MCO05G050 Micromonas commoda HOM05D006601 ORTHO05D008281 2.4e-29 133.3 131 54.2
Cre18.g749347 Chlamydomonas reinhardtii HOM05D006601 ORTHO05D008281 4.5e-28 129.0 147 47.6
PSO692G0001 Papaver somniferum HOM05D006601 ORTHO05D008281 5.0e-27 125.6 104 69.2
PSO801G0555 Papaver somniferum HOM05D006601 ORTHO05D008281 5.0e-27 125.6 104 69.2
Ah.06g186680 Amaranthus hybridus HOM05D006601 ORTHO05D008281 8.3e-22 108.2 73 78.1
Aqoxy2G01116 Aquilegia oxysepala HOM05D006601 ORTHO05D008281 1.6e-20 104.0 102 58.8
Zm00001eb039400 Zea mays HOM05D006601 ORTHO05D008281 1.7e-19 100.5 66 77.3
CiPaw.14G033700 Carya illinoinensis HOM05D006601 ORTHO05D008281 3.8e-19 99.4 83 67.5
Cfa024623 Carpinus fangiana HOM05D006601 ORTHO05D008281 6.8e-16 88.6 108 41.7
Lsat_1_v5_gn_4_8660 Lactuca sativa HOM05D006601 ORTHO05D008281 1.2e-12 77.8 79 55.7
BcaC02g09271 Brassica carinata HOM05D006601 ORTHO05D008281 4.3e-10 69.3 98 51.0
EL10Ac7g17292 Beta vulgaris HOM05D006601 ORTHO05D008281 6.2e-09 65.5 31 80.6
Hma1.2p1_1491F.1_g286720 Hydrangea macrophylla HOM05D006601 ORTHO05D008281 6.2e-09 65.5 37 86.5
Aqoxy2G01117 Aquilegia oxysepala HOM05D006601 ORTHO05D008281 5.2e-08 62.4 31 77.4
AagrBONN_evm.TU.Sc2ySwM_228.2727 Anthoceros agrestis HOM05D006601 ORTHO05D008281 1.7e-06 57.4 58 51.7


User provided reference genes

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