Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG08G008260 Citrullus lanatus HOM05D007039 ORTHO05D008886 7.8e-166 587.0 290 100.0
MELO3C019894.2 Cucumis melo HOM05D007039 ORTHO05D008886 3.8e-128 461.8 282 81.6
Sed0014501 Sechium edule HOM05D007039 ORTHO05D008886 1.9e-116 422.9 282 74.8
CsaV3_6G004220 Cucumis sativus L. HOM05D007039 ORTHO05D008886 1.1e-98 364.0 185 91.9
vmacro10308 Vaccinium macrocarpon HOM05D007039 ORTHO05D008886 4.2e-95 352.1 302 59.9
Rhsim09G0142000 Rhododendron simsii HOM05D007039 ORTHO05D008886 7.9e-94 347.8 289 60.6
Cc02_g09650 Coffea canephora HOM05D007039 ORTHO05D008886 2.3e-93 346.3 288 60.8
GSVIVG01001001001 Vitis vinifera HOM05D007039 ORTHO05D008886 5.1e-93 345.1 289 60.6
Eucgr.J00258 Eucalyptus grandis HOM05D007039 ORTHO05D008886 5.7e-92 341.7 287 62.0
MD02G1261300 Malus domestica HOM05D007039 ORTHO05D008886 1.7e-91 340.1 275 63.3
CANSAT56G1368 Cannabis sativa HOM05D007039 ORTHO05D008886 2.2e-91 339.7 269 62.1
Oeu025598.1 Olea europaea HOM05D007039 ORTHO05D008886 2.8e-91 339.3 283 61.5
Cfa011268 Carpinus fangiana HOM05D007039 ORTHO05D008886 8.2e-91 337.8 286 59.4
CiPaw.14G032800 Carya illinoinensis HOM05D007039 ORTHO05D008886 2.4e-90 336.3 287 59.6
Prupe.2G067300 Prunus persica HOM05D007039 ORTHO05D008886 1.2e-89 334.0 275 62.2
HanXRQChr08g0217501 Helianthus annuus HOM05D007039 ORTHO05D008886 2.0e-89 333.2 274 60.6
Migut.F00878 Erythranthe guttata HOM05D007039 ORTHO05D008886 1.7e-88 330.1 273 62.6
Lj2A32T31 Lonicera japonica HOM05D007039 ORTHO05D008886 3.8e-88 328.9 275 61.1
RcHm_v2.0_Chr1g0331721 Rosa chinensis HOM05D007039 ORTHO05D008886 5.0e-88 328.6 273 63.0
Dinv11837 Davidia involucrata HOM05D007039 ORTHO05D008886 1.4e-87 327.0 285 60.0
CSS0023700 Camellia sinensis var. sinensis HOM05D007039 ORTHO05D008886 1.9e-87 326.6 282 59.2
CAN.G186.55 Capsicum annuum HOM05D007039 ORTHO05D008886 1.9e-87 326.6 290 59.3
Thecc.07G140700 Theobroma cacao HOM05D007039 ORTHO05D008886 7.2e-87 324.7 272 59.9
PGSC0003DMG400016998 Solanum tuberosum HOM05D007039 ORTHO05D008886 2.1e-86 323.2 290 59.3
CSS0047124 Camellia sinensis var. sinensis HOM05D007039 ORTHO05D008886 1.0e-85 320.9 272 59.2
Oeu036842.1 Olea europaea HOM05D007039 ORTHO05D008886 3.0e-85 319.3 277 58.1
Sopen04g004820 Solanum pennellii HOM05D007039 ORTHO05D008886 3.0e-85 319.3 290 58.3
TAR623G0720 Trochodendron aralioides HOM05D007039 ORTHO05D008886 3.0e-85 319.3 289 57.8
SalBow6G1307 Salvia bowleyana HOM05D007039 ORTHO05D008886 5.2e-85 318.5 276 60.1
TWI63G1767 Tripterygium wilfordii HOM05D007039 ORTHO05D008886 6.7e-85 318.2 289 56.1
AUR62041513 Chenopodium quinoa HOM05D007039 ORTHO05D008886 8.8e-85 317.8 286 55.2
arahy.Tifrunner.gnm1.ann1.XC1RGZ Arachis hypogaea HOM05D007039 ORTHO05D008886 1.1e-84 317.4 276 57.6
Ciclev10016452m.g Citrus clementina HOM05D007039 ORTHO05D008886 1.5e-84 317.0 277 58.1
Solyc04g009700.3 Solanum lycopersicum HOM05D007039 ORTHO05D008886 1.5e-84 317.0 290 57.6
FAN06G3803 Fragaria x ananassa HOM05D007039 ORTHO05D008886 2.0e-84 316.6 272 60.3
SGA_v2.0_scaffold62G21336 Striga asiatica HOM05D007039 ORTHO05D008886 2.0e-84 316.6 290 57.9
Lsat_1_v5_gn_8_24101 Lactuca sativa HOM05D007039 ORTHO05D008886 2.6e-84 316.2 274 57.7
arahy.Tifrunner.gnm1.ann1.2NV5LW Arachis hypogaea HOM05D007039 ORTHO05D008886 3.3e-84 315.8 276 57.6
Sabra10G0186900 Salix brachista HOM05D007039 ORTHO05D008886 4.4e-84 315.5 289 56.4
FAN10G1571 Fragaria x ananassa HOM05D007039 ORTHO05D008886 9.7e-84 314.3 272 61.0
FAN01G2006 Fragaria x ananassa HOM05D007039 ORTHO05D008886 1.3e-83 313.9 272 60.3
PSO384G1372 Papaver somniferum HOM05D007039 ORTHO05D008886 2.2e-83 313.2 288 56.2
MD07G1059500 Malus domestica HOM05D007039 ORTHO05D008886 2.8e-83 312.8 275 58.9
Ah.06g186600 Amaranthus hybridus HOM05D007039 ORTHO05D008886 6.3e-83 311.6 286 57.3
Potri.010G238700 Populus trichocarpa HOM05D007039 ORTHO05D008886 6.3e-83 311.6 289 56.7
PSO339G1176 Papaver somniferum HOM05D007039 ORTHO05D008886 8.2e-83 311.2 288 55.9
FAN03G1588 Fragaria x ananassa HOM05D007039 ORTHO05D008886 1.1e-82 310.8 272 59.2
Hund22275 Selenicereus undatus HOM05D007039 ORTHO05D008886 1.8e-82 310.1 289 54.7
Atru.chr12.1023 Acer truncatum HOM05D007039 ORTHO05D008886 2.4e-82 309.7 287 54.7
AUR62042080 Chenopodium quinoa HOM05D007039 ORTHO05D008886 4.1e-82 308.9 271 55.7
Aqoxy2G01207 Aquilegia oxysepala HOM05D007039 ORTHO05D008886 7.0e-82 308.1 286 56.3
EL10Ac4g08687 Beta vulgaris HOM05D007039 ORTHO05D008886 9.1e-82 307.8 286 55.2
Manes.07G087400 Manihot esculenta HOM05D007039 ORTHO05D008886 9.1e-82 307.8 273 56.4
QL04p044873 Quercus lobata HOM05D007039 ORTHO05D008886 2.6e-81 306.2 277 56.0
Sc20g0001160 Simmondsia chinensis HOM05D007039 ORTHO05D008886 2.6e-81 306.2 294 54.1
Ca_25665_v3 Cicer arietinum L. HOM05D007039 ORTHO05D008886 3.5e-81 305.8 276 57.2
COL.COLO4_17444 Corchorus olitorius HOM05D007039 ORTHO05D008886 5.9e-81 305.1 274 56.9
Duzib106G1061 Durio zibethinus HOM05D007039 ORTHO05D008886 7.7e-81 304.7 285 54.4
Gohir.D06G182700 Gossypium hirsutum HOM05D007039 ORTHO05D008886 7.7e-81 304.7 286 54.9
Gorai.010G214000 Gossypium raimondii HOM05D007039 ORTHO05D008886 1.7e-80 303.5 286 54.9
Nn6g34917 Nelumbo nucifera HOM05D007039 ORTHO05D008886 1.7e-80 303.5 289 55.7
Gohir.D06G183000 Gossypium hirsutum HOM05D007039 ORTHO05D008886 8.5e-80 301.2 286 53.8
TPR.G2471 Trifolium pratense HOM05D007039 ORTHO05D008886 8.5e-80 301.2 278 55.0
Gohir.A06G173100 Gossypium hirsutum HOM05D007039 ORTHO05D008886 1.1e-79 300.8 286 53.8
Lalb_Chr06g0166411 Lupinus albus HOM05D007039 ORTHO05D008886 1.5e-79 300.4 275 55.6
Potri.008G020500 Populus trichocarpa HOM05D007039 ORTHO05D008886 1.5e-79 300.4 289 55.7
Gorai.010G214100 Gossypium raimondii HOM05D007039 ORTHO05D008886 1.9e-79 300.1 286 54.2
Medtr1g112080 Medicago truncatula HOM05D007039 ORTHO05D008886 2.5e-79 299.7 278 55.0
unitig_748.g8774 Utricularia gibba HOM05D007039 ORTHO05D008886 2.5e-79 299.7 284 54.2
Glyma.20G110700 Glycine max HOM05D007039 ORTHO05D008886 5.5e-79 298.5 276 55.1
Gohir.D06G183100 Gossypium hirsutum HOM05D007039 ORTHO05D008886 5.5e-79 298.5 286 54.2
THA.LOC104801579 Tarenaya hassleriana HOM05D007039 ORTHO05D008886 5.5e-79 298.5 281 53.7
Phvul.007G022300 Phaseolus vulgaris HOM05D007039 ORTHO05D008886 1.6e-78 297.0 276 54.3
Psat6g231000 Pisum sativum HOM05D007039 ORTHO05D008886 6.1e-78 295.0 278 56.1
VMungo0720G0617 Vigna mungo HOM05D007039 ORTHO05D008886 2.3e-77 293.1 276 52.9
Lj5g0024269 Lotus japonicus HOM05D007039 ORTHO05D008886 1.5e-76 290.4 272 55.5
Zm00001eb366890 Zea mays HOM05D007039 ORTHO05D008886 2.6e-76 289.7 284 52.1
Os01g0859400 Oryza sativa ssp. japonica HOM05D007039 ORTHO05D008886 3.7e-75 285.8 284 51.4
Peaxi162Scf00195g01020 Petunia axillaris HOM05D007039 ORTHO05D008886 3.7e-75 285.8 290 54.5
Zm00001eb147230 Zea mays HOM05D007039 ORTHO05D008886 1.1e-74 284.3 284 51.8
Nitab4.5_0003927g0060 Nicotiana tabacum HOM05D007039 ORTHO05D008886 1.8e-74 283.5 276 56.5
HPP92_006806 Vanilla planifolia HOM05D007039 ORTHO05D008886 3.5e-73 279.3 286 51.4
TAR633G1803 Trochodendron aralioides HOM05D007039 ORTHO05D008886 5.9e-73 278.5 271 51.7
Cpa.g.sc56.15 Carica papaya HOM05D007039 ORTHO05D008886 1.0e-69 267.7 228 58.3
Dinv09617 Davidia involucrata HOM05D007039 ORTHO05D008886 1.8e-66 256.9 289 50.5
ECA233G2799 Erigeron canadensis HOM05D007039 ORTHO05D008886 1.3e-64 250.8 220 55.9
MSTRG.9060 Avicennia marina HOM05D007039 ORTHO05D008886 2.5e-63 246.5 182 63.2
HPP92_009768 Vanilla planifolia HOM05D007039 ORTHO05D008886 3.2e-63 246.1 266 47.0
Eucgr.J00257 Eucalyptus grandis HOM05D007039 ORTHO05D008886 4.2e-63 245.7 182 67.0
FvH4_7g05130 Fragaria vesca HOM05D007039 ORTHO05D008886 5.5e-63 245.4 179 65.9
PGSC0003DMG400023289 Solanum tuberosum HOM05D007039 ORTHO05D008886 5.5e-63 245.4 183 63.9
Oeu036841.1 Olea europaea HOM05D007039 ORTHO05D008886 7.2e-63 245.0 182 63.2
HPP92_009745 Vanilla planifolia HOM05D007039 ORTHO05D008886 1.2e-62 244.2 266 46.6
PGR142G0235 Punica granatum HOM05D007039 ORTHO05D008886 1.6e-62 243.8 183 63.9
Zm00001eb092690 Zea mays HOM05D007039 ORTHO05D008886 1.6e-57 227.3 273 44.0
CSS0008887 Camellia sinensis var. sinensis HOM05D007039 ORTHO05D008886 2.0e-57 226.9 178 62.4
Glyma.10G279000 Glycine max HOM05D007039 ORTHO05D008886 1.7e-56 223.8 272 47.1
Os12g0152800 Oryza sativa ssp. japonica HOM05D007039 ORTHO05D008886 5.6e-55 218.8 274 43.4
Mapoly0010s0050 Marchantia polymorpha HOM05D007039 ORTHO05D008886 8.0e-54 214.9 262 42.7
CSS0041399 Camellia sinensis var. sinensis HOM05D007039 ORTHO05D008886 1.8e-50 203.8 175 60.0
CDE08G0883 Ceratophyllum demersum HOM05D007039 ORTHO05D008886 2.3e-48 196.8 152 57.2
CBR_g32363 Chara braunii HOM05D007039 ORTHO05D008886 6.6e-48 195.3 240 42.5
SMO367G0592 Selaginella moellendorffii HOM05D007039 ORTHO05D008886 2.5e-47 193.4 263 40.3
AagrBONN_evm.TU.Sc2ySwM_362.1562 Anthoceros agrestis HOM05D007039 ORTHO05D008886 3.1e-45 186.4 272 37.5
Pp3c15_5790 Physcomitrium patens HOM05D007039 ORTHO05D008886 5.8e-44 182.2 287 36.9
DCAR_019005 Daucus carota HOM05D007039 ORTHO05D008886 3.7e-43 179.5 109 68.8
AagrBONN_evm.TU.Sc2ySwM_228.3073 Anthoceros agrestis HOM05D007039 ORTHO05D008886 6.4e-43 178.7 249 39.8
Zm00001eb197030 Zea mays HOM05D007039 ORTHO05D008886 2.4e-42 176.8 178 46.1
SMO353G0277 Selaginella moellendorffii HOM05D007039 ORTHO05D008886 1.2e-33 147.9 184 41.8
Nitab4.5_0000691g0070 Nicotiana tabacum HOM05D007039 ORTHO05D008886 5.4e-26 122.5 275 35.3
MD04G1248500 Malus domestica HOM05D007039 ORTHO05D008886 9.2e-26 121.7 105 60.0
Cre01.g018100 Chlamydomonas reinhardtii HOM05D007039 ORTHO05D008886 5.2e-21 105.9 248 27.4
PRCOL_00002076 Prasinoderma coloniale HOM05D007039 ORTHO05D008886 1.9e-15 87.4 304 23.0


User provided reference genes

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