Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG08G008060 Citrullus lanatus HOM05D003420 ORTHO05D003970 2.8e-77 292.0 156 100.0
CsaV3_6G004750 Cucumis sativus L. HOM05D003420 ORTHO05D003970 1.0e-34 150.6 174 58.6
Cpa.g.sc88.64 Carica papaya HOM05D003420 ORTHO05D003970 5.0e-34 148.3 176 56.8
ClCG08G008720 Citrullus lanatus HOM05D003420 ORTHO05D003970 8.5e-34 147.5 174 58.0
DCAR_013169 Daucus carota HOM05D003420 ORTHO05D003970 1.1e-33 147.1 151 62.3
Sed0005269 Sechium edule HOM05D003420 ORTHO05D003970 1.1e-33 147.1 174 58.0
CSS0045751 Camellia sinensis var. sinensis HOM05D003420 ORTHO05D003970 1.4e-33 146.7 174 58.0
Lalb_Chr01g0009891 Lupinus albus HOM05D003420 ORTHO05D003970 1.9e-33 146.4 174 56.3
Hma1.2p1_0276F.1_g111220 Hydrangea macrophylla HOM05D003420 ORTHO05D003970 2.5e-33 146.0 174 57.5
Thecc.01G140700 Theobroma cacao HOM05D003420 ORTHO05D003970 2.5e-33 146.0 174 55.7
GSVIVG01038535001 Vitis vinifera HOM05D003420 ORTHO05D003970 3.2e-33 145.6 174 59.2
Lj4C710T4 Lonicera japonica HOM05D003420 ORTHO05D003970 4.2e-33 145.2 174 56.9
QL02p034947 Quercus lobata HOM05D003420 ORTHO05D003970 4.2e-33 145.2 174 56.3
CiPaw.15G007400 Carya illinoinensis HOM05D003420 ORTHO05D003970 7.2e-33 144.4 174 55.7
Lj4g0005231 Lotus japonicus HOM05D003420 ORTHO05D003970 7.2e-33 144.4 174 55.7
PGR102G1634 Punica granatum HOM05D003420 ORTHO05D003970 7.2e-33 144.4 174 55.7
Rhsim05G0166700 Rhododendron simsii HOM05D003420 ORTHO05D003970 7.2e-33 144.4 174 57.5
TPR.G31331 Trifolium pratense HOM05D003420 ORTHO05D003970 7.2e-33 144.4 161 57.8
GSVIVG01022846001 Vitis vinifera HOM05D003420 ORTHO05D003970 9.4e-33 144.1 174 58.6
Duzib187G1187 Durio zibethinus HOM05D003420 ORTHO05D003970 1.2e-32 143.7 174 56.3
Prupe.4G277400 Prunus persica HOM05D003420 ORTHO05D003970 1.2e-32 143.7 174 55.7
QL05p025121 Quercus lobata HOM05D003420 ORTHO05D003970 1.2e-32 143.7 174 56.3
Gohir.A10G068000 Gossypium hirsutum HOM05D003420 ORTHO05D003970 1.6e-32 143.3 174 55.7
Gohir.D10G107600 Gossypium hirsutum HOM05D003420 ORTHO05D003970 1.6e-32 143.3 174 55.7
Gorai.011G117900 Gossypium raimondii HOM05D003420 ORTHO05D003970 1.6e-32 143.3 174 55.7
Medtr4g024570 Medicago truncatula HOM05D003420 ORTHO05D003970 1.6e-32 143.3 174 54.0
Cc10_g06190 Coffea canephora HOM05D003420 ORTHO05D003970 2.1e-32 142.9 174 56.3
Oeu027630.1 Olea europaea HOM05D003420 ORTHO05D003970 2.1e-32 142.9 174 56.3
vmacro11080 Vaccinium macrocarpon HOM05D003420 ORTHO05D003970 2.1e-32 142.9 153 62.7
Glyma.03G026900 Glycine max HOM05D003420 ORTHO05D003970 2.7e-32 142.5 174 54.6
MD14G1071700 Malus domestica HOM05D003420 ORTHO05D003970 2.7e-32 142.5 173 56.6
Phvul.010G082700 Phaseolus vulgaris HOM05D003420 ORTHO05D003970 2.7e-32 142.5 174 54.6
Aqoxy2G01386 Aquilegia oxysepala HOM05D003420 ORTHO05D003970 3.6e-32 142.1 175 57.1
EL10Ac8g19742 Beta vulgaris HOM05D003420 ORTHO05D003970 4.6e-32 141.7 163 57.1
CSS0008854 Camellia sinensis var. sinensis HOM05D003420 ORTHO05D003970 4.6e-32 141.7 181 55.8
CANSAT25G1859 Cannabis sativa HOM05D003420 ORTHO05D003970 4.6e-32 141.7 174 55.2
Glyma.01G140600 Glycine max HOM05D003420 ORTHO05D003970 4.6e-32 141.7 174 54.0
Psat7g231160 Pisum sativum HOM05D003420 ORTHO05D003970 4.6e-32 141.7 174 53.4
SGA_v2.0_scaffold48G18027 Striga asiatica HOM05D003420 ORTHO05D003970 4.6e-32 141.7 173 56.6
TAR625G1262 Trochodendron aralioides HOM05D003420 ORTHO05D003970 4.6e-32 141.7 174 56.3
VMungo0331G1041 Vigna mungo HOM05D003420 ORTHO05D003970 4.6e-32 141.7 174 55.2
Potri.013G117400 Populus trichocarpa HOM05D003420 ORTHO05D003970 6.1e-32 141.4 174 55.7
QL05p046655 Quercus lobata HOM05D003420 ORTHO05D003970 6.1e-32 141.4 174 55.7
Nn8g40471 Nelumbo nucifera HOM05D003420 ORTHO05D003970 7.9e-32 141.0 174 55.7
PSO210G4421 Papaver somniferum HOM05D003420 ORTHO05D003970 7.9e-32 141.0 175 55.4
PSO447G0346 Papaver somniferum HOM05D003420 ORTHO05D003970 7.9e-32 141.0 175 55.4
RcHm_v2.0_Chr3g0482841 Rosa chinensis HOM05D003420 ORTHO05D003970 7.9e-32 141.0 174 56.3
TWI32G0430 Tripterygium wilfordii HOM05D003420 ORTHO05D003970 7.9e-32 141.0 174 53.4
Lalb_Chr19g0129871 Lupinus albus HOM05D003420 ORTHO05D003970 1.0e-31 140.6 174 54.0
Nitab4.5_0001307g0060 Nicotiana tabacum HOM05D003420 ORTHO05D003970 1.0e-31 140.6 174 55.2
Nitab4.5_0002608g0090 Nicotiana tabacum HOM05D003420 ORTHO05D003970 1.0e-31 140.6 174 55.2
Peaxi162Scf00226g00925 Petunia axillaris HOM05D003420 ORTHO05D003970 1.0e-31 140.6 174 56.3
Potri.019G088100 Populus trichocarpa HOM05D003420 ORTHO05D003970 1.0e-31 140.6 174 55.7
Sabra13G0099500 Salix brachista HOM05D003420 ORTHO05D003970 1.0e-31 140.6 174 55.2
Actinidia22448 Actinidia chinensis HOM05D003420 ORTHO05D003970 1.4e-31 140.2 174 55.2
FAN14G5243 Fragaria x ananassa HOM05D003420 ORTHO05D003970 1.4e-31 140.2 174 55.7
Eucgr.F04156 Eucalyptus grandis HOM05D003420 ORTHO05D003970 1.8e-31 139.8 174 54.0
FvH4_6g24280 Fragaria vesca HOM05D003420 ORTHO05D003970 1.8e-31 139.8 174 55.7
Sc02g0003530 Simmondsia chinensis HOM05D003420 ORTHO05D003970 1.8e-31 139.8 173 56.1
THA.LOC104800101 Tarenaya hassleriana HOM05D003420 ORTHO05D003970 2.3e-31 139.4 174 54.6
CAN.G1010.15 Capsicum annuum HOM05D003420 ORTHO05D003970 3.0e-31 139.0 174 55.7
Cfa018227 Carpinus fangiana HOM05D003420 ORTHO05D003970 3.0e-31 139.0 174 54.6
arahy.Tifrunner.gnm1.ann1.GQ31QR Arachis hypogaea HOM05D003420 ORTHO05D003970 3.9e-31 138.7 174 53.4
arahy.Tifrunner.gnm1.ann1.PV9APJ Arachis hypogaea HOM05D003420 ORTHO05D003970 3.9e-31 138.7 174 53.4
FAN02G2135 Fragaria x ananassa HOM05D003420 ORTHO05D003970 3.9e-31 138.7 174 55.2
HanXRQChr10g0278771 Helianthus annuus HOM05D003420 ORTHO05D003970 3.9e-31 138.7 174 55.7
COL.COLO4_12104 Corchorus olitorius HOM05D003420 ORTHO05D003970 5.1e-31 138.3 172 54.1
Manes.02G187400 Manihot esculenta HOM05D003420 ORTHO05D003970 5.1e-31 138.3 174 54.0
FAN05G2825 Fragaria x ananassa HOM05D003420 ORTHO05D003970 6.7e-31 137.9 174 55.2
Solyc04g072290.3 Solanum lycopersicum HOM05D003420 ORTHO05D003970 8.8e-31 137.5 174 55.2
Sopen04g028480 Solanum pennellii HOM05D003420 ORTHO05D003970 8.8e-31 137.5 174 55.2
Manes.18G097100 Manihot esculenta HOM05D003420 ORTHO05D003970 1.1e-30 137.1 172 54.1
CiPaw.15G007500 Carya illinoinensis HOM05D003420 ORTHO05D003970 1.5e-30 136.7 174 54.0
TWI32G0245 Tripterygium wilfordii HOM05D003420 ORTHO05D003970 1.5e-30 136.7 174 52.3
unitig_46.g18008 Utricularia gibba HOM05D003420 ORTHO05D003970 1.5e-30 136.7 174 54.6
Atru.chr13.1894 Acer truncatum HOM05D003420 ORTHO05D003970 2.0e-30 136.3 174 54.6
MSTRG.963 Avicennia marina HOM05D003420 ORTHO05D003970 3.3e-30 135.6 174 53.4
MBI05_g36581_MAGBIO Magnolia biondii HOM05D003420 ORTHO05D003970 3.3e-30 135.6 153 56.9
Oeu042182.1 Olea europaea HOM05D003420 ORTHO05D003970 4.3e-30 135.2 185 54.6
ECA246G4467 Erigeron canadensis HOM05D003420 ORTHO05D003970 9.7e-30 134.0 174 54.0
MBI05_g43692_MAGBIO Magnolia biondii HOM05D003420 ORTHO05D003970 4.8e-29 131.7 174 51.7
Lsat_1_v5_gn_6_100921 Lactuca sativa HOM05D003420 ORTHO05D003970 6.3e-29 131.3 174 53.4
ATR0815G027 Amborella trichopoda HOM05D003420 ORTHO05D003970 1.1e-28 130.6 174 50.6
HanXRQChr10g0278751 Helianthus annuus HOM05D003420 ORTHO05D003970 2.4e-28 129.4 174 51.7
MBI02_g44124_MAGBIO Magnolia biondii HOM05D003420 ORTHO05D003970 2.4e-28 129.4 160 54.4
Ah.09g232700 Amaranthus hybridus HOM05D003420 ORTHO05D003970 3.1e-28 129.0 186 50.0
BcaB03g15619 Brassica carinata HOM05D003420 ORTHO05D003970 5.3e-28 128.3 174 52.9
BcaC08g45755 Brassica carinata HOM05D003420 ORTHO05D003970 5.3e-28 128.3 174 52.9
A07p30580 Brassica napus HOM05D003420 ORTHO05D003970 5.3e-28 128.3 174 52.9
C06p35360 Brassica napus HOM05D003420 ORTHO05D003970 5.3e-28 128.3 174 52.9
BolC6t38641H Brassica oleracea HOM05D003420 ORTHO05D003970 5.3e-28 128.3 174 52.9
BraA07t30693Z Brassica rapa HOM05D003420 ORTHO05D003970 5.3e-28 128.3 174 52.9
DCAR_009600 Daucus carota HOM05D003420 ORTHO05D003970 5.3e-28 128.3 148 56.1
Migut.C00172 Erythranthe guttata HOM05D003420 ORTHO05D003970 5.3e-28 128.3 173 50.9
AT1G71820 Arabidopsis thaliana HOM05D003420 ORTHO05D003970 6.9e-28 127.9 174 52.3
Aa31LG4G8810 Aethionema arabicum HOM05D003420 ORTHO05D003970 9.1e-28 127.5 174 52.3
Ciclev10000395m.g Citrus clementina HOM05D003420 ORTHO05D003970 9.1e-28 127.5 174 51.7
Ciclev10000376m.g Citrus clementina HOM05D003420 ORTHO05D003970 1.2e-27 127.1 174 51.1
MBI02_g35947_MAGBIO Magnolia biondii HOM05D003420 ORTHO05D003970 1.5e-27 126.7 155 56.1
Sp5g26850 Schrenkiella parvula HOM05D003420 ORTHO05D003970 1.5e-27 126.7 174 51.7
SpUn0020_0120 Schrenkiella parvula HOM05D003420 ORTHO05D003970 1.5e-27 126.7 174 51.7
HPP92_002340 Vanilla planifolia HOM05D003420 ORTHO05D003970 1.5e-27 126.7 172 52.3
AL2G31400 Arabidopsis lyrata HOM05D003420 ORTHO05D003970 2.0e-27 126.3 174 51.7
Carub.0002s1858 Capsella rubella HOM05D003420 ORTHO05D003970 2.0e-27 126.3 174 51.7
CARHR290960 Cardamine hirsuta HOM05D003420 ORTHO05D003970 2.0e-27 126.3 174 51.7
Thhalv10018180m.g Eutrema salsugineum HOM05D003420 ORTHO05D003970 2.0e-27 126.3 174 51.7
SHI09125 Sapria himalayana HOM05D003420 ORTHO05D003970 2.0e-27 126.3 171 49.7
Atru.chr6.1390 Acer truncatum HOM05D003420 ORTHO05D003970 2.6e-27 125.9 174 51.1
MBI05_g36592_MAGBIO Magnolia biondii HOM05D003420 ORTHO05D003970 2.6e-27 125.9 174 51.1
BcaC08g46613 Brassica carinata HOM05D003420 ORTHO05D003970 4.5e-27 125.2 174 51.1
A07p37970 Brassica napus HOM05D003420 ORTHO05D003970 4.5e-27 125.2 174 51.1
C06p45890 Brassica napus HOM05D003420 ORTHO05D003970 4.5e-27 125.2 174 51.1
BolC6t39641H Brassica oleracea HOM05D003420 ORTHO05D003970 4.5e-27 125.2 174 51.1
BraA07t31362Z Brassica rapa HOM05D003420 ORTHO05D003970 4.5e-27 125.2 174 51.1
Sabra19G0098400 Salix brachista HOM05D003420 ORTHO05D003970 5.9e-27 124.8 206 47.6
Actinidia15626 Actinidia chinensis HOM05D003420 ORTHO05D003970 1.3e-26 123.6 177 50.3
Atru.chr7.57 Acer truncatum HOM05D003420 ORTHO05D003970 1.7e-26 123.2 175 50.9
Sabra19G0101900 Salix brachista HOM05D003420 ORTHO05D003970 2.9e-26 122.5 206 47.1
Migut.C00145 Erythranthe guttata HOM05D003420 ORTHO05D003970 8.5e-26 120.9 176 47.7
ATR0824G022 Amborella trichopoda HOM05D003420 ORTHO05D003970 2.5e-25 119.4 161 50.9
HanXRQChr01g0002061 Helianthus annuus HOM05D003420 ORTHO05D003970 1.3e-21 107.1 177 46.3
CDE04G0884 Ceratophyllum demersum HOM05D003420 ORTHO05D003970 2.4e-20 102.8 149 49.0
AagrBONN_evm.TU.Sc2ySwM_228.2748 Anthoceros agrestis HOM05D003420 ORTHO05D003970 9.1e-20 100.9 172 41.9
MELO3C019945.2 Cucumis melo HOM05D003420 ORTHO05D003970 9.1e-20 100.9 107 59.8
Mapoly0001s0359 Marchantia polymorpha HOM05D003420 ORTHO05D003970 9.1e-20 100.9 173 42.2
Atru.chr13.1960 Acer truncatum HOM05D003420 ORTHO05D003970 2.0e-19 99.8 207 40.1
AUR62027528 Chenopodium quinoa HOM05D003420 ORTHO05D003970 7.7e-19 97.8 177 43.5
AUR62030227 Chenopodium quinoa HOM05D003420 ORTHO05D003970 7.7e-19 97.8 177 43.5
AagrBONN_evm.TU.Sc2ySwM_117.1499 Anthoceros agrestis HOM05D003420 ORTHO05D003970 1.0e-18 97.4 179 40.8
Ca_19960_v3 Cicer arietinum L. HOM05D003420 ORTHO05D003970 2.2e-18 96.3 147 47.6
Pp3c8_3920 Physcomitrium patens HOM05D003420 ORTHO05D003970 3.8e-18 95.5 173 41.0
Haze_13388 Corylus avellana HOM05D011287 ORTHO05D013061 3.2e-17 92.4 61 80.3
SMO298G0019 Selaginella moellendorffii HOM05D003420 ORTHO05D003970 1.4e-15 87.0 175 40.6
CBR_g30506 Chara braunii HOM05D003420 ORTHO05D003970 2.6e-14 82.8 168 39.3
SEGI_12719 Sequoiadendron giganteum HOM05D003420 ORTHO05D003970 9.7e-14 80.9 53 77.4
Hma1.2p1_1261F.1_g271140 Hydrangea macrophylla HOM05D003420 ORTHO05D003970 1.6e-11 73.6 90 57.8
GSVIVG01022862001 Vitis vinifera HOM05D003420 ORTHO05D003970 2.6e-11 72.8 119 49.6
Actinidia06762 Actinidia chinensis HOM05D003420 ORTHO05D003970 1.3e-10 70.5 118 48.3
Haze_13391 Corylus avellana HOM05D003420 ORTHO05D003970 1.2e-08 63.9 46 76.1
Cfa000383 Carpinus fangiana HOM05D003420 ORTHO05D003970 2.7e-08 62.8 44 79.5
Os02g0749500 Oryza sativa ssp. japonica HOM05D003420 ORTHO05D003970 3.6e-08 62.4 89 49.4
MELO3C030259.2 Cucumis melo HOM05D003420 ORTHO05D003970 4.7e-08 62.0 44 77.3
Haze_13390 Corylus avellana HOM05D003420 ORTHO05D003970 2.3e-07 59.7 41 80.5
BcaB04g20817 Brassica carinata HOM05D003420 ORTHO05D027085 5.2e-07 58.5 117 41.0
vmacro03706 Vaccinium macrocarpon HOM05D003420 ORTHO05D003970 6.7e-07 58.2 44 77.3
SGA_v2.0_scaffold24G10292 Striga asiatica HOM05D003420 ORTHO05D003970 1.2e-06 57.4 65 50.8
SEGI_15136 Sequoiadendron giganteum HOM05D003420 ORTHO05D003970 2.0e-06 56.6 42 76.2
C01p42750 Brassica napus HOM05D011622 ORTHO05D016081 2.6e-06 56.2 52 61.5


User provided reference genes

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