Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG08G007930 Citrullus lanatus HOM05D003470 ORTHO05D004157 0.0e+00 1723.4 921 100.0
Sed0009504 Sechium edule HOM05D003470 ORTHO05D004157 9.4e-266 920.6 939 59.4
Gohir.A10G200100 Gossypium hirsutum HOM05D003470 ORTHO05D004157 3.5e-127 460.3 1080 34.9
Duzib114G1051 Durio zibethinus HOM05D003470 ORTHO05D004157 6.1e-124 449.5 1162 32.7
PSO063G0006 Papaver somniferum HOM05D003470 ORTHO05D004157 3.1e-115 420.6 1089 32.8
Potri.008G029800 Populus trichocarpa HOM05D003470 ORTHO05D004157 2.4e-112 411.0 1089 32.3
TAR633G0390 Trochodendron aralioides HOM05D003470 ORTHO05D004157 7.0e-112 409.5 1192 31.5
Duzib106G0260 Durio zibethinus HOM05D003470 ORTHO05D004157 7.8e-111 406.0 1161 31.9
Sabra08G0020000 Salix brachista HOM05D003470 ORTHO05D004157 3.3e-109 400.6 1174 30.8
PSO339G3515 Papaver somniferum HOM05D003470 ORTHO05D004157 4.7e-108 396.7 1077 31.7
Thecc.10G090100 Theobroma cacao HOM05D003470 ORTHO05D004157 3.1e-107 394.0 1178 30.7
Gorai.011G233700 Gossypium raimondii HOM05D003470 ORTHO05D004157 6.8e-107 392.9 1080 32.5
Gohir.D10G208000 Gossypium hirsutum HOM05D003470 ORTHO05D004157 3.4e-106 390.6 1080 32.3
Aqoxy1G01047 Aquilegia oxysepala HOM05D003470 ORTHO05D004157 2.4e-104 384.4 1140 30.7
CSS0002390 Camellia sinensis var. sinensis HOM05D003470 ORTHO05D004157 1.7e-102 378.3 1130 30.9
Ciclev10033678m.g Citrus clementina HOM05D003470 ORTHO05D004157 1.1e-101 375.6 1183 29.9
DCAR_006389 Daucus carota HOM05D003470 ORTHO05D004157 1.6e-100 371.7 1060 31.5
GSVIVG01016161001 Vitis vinifera HOM05D003470 ORTHO05D004157 1.4e-96 358.6 990 31.3
MD14G1098000 Malus domestica HOM05D003470 ORTHO05D004157 4.1e-96 357.1 986 31.3
TAR623G0591 Trochodendron aralioides HOM05D003470 ORTHO05D004157 4.1e-96 357.1 1170 30.2
Haze_16780 Corylus avellana HOM05D003470 ORTHO05D004157 9.2e-96 355.9 557 42.2
TWI38G0957 Tripterygium wilfordii HOM05D003470 ORTHO05D004157 1.9e-93 348.2 770 35.6
Dinv37350 Davidia involucrata HOM05D003470 ORTHO05D004157 7.3e-93 346.3 1051 30.8
COL.COLO4_32876 Corchorus olitorius HOM05D003470 ORTHO05D004157 3.6e-92 344.0 1038 30.8
Actinidia18557 Actinidia chinensis HOM05D003470 ORTHO05D004157 1.4e-91 342.0 1056 31.7
Ca_10457_v3 Cicer arietinum L. HOM05D003470 ORTHO05D004157 2.1e-87 328.2 997 30.9
Nn6g35185 Nelumbo nucifera HOM05D003470 ORTHO05D004157 1.1e-85 322.4 1143 29.4
Eucgr.G02735 Eucalyptus grandis HOM05D003470 ORTHO05D004157 1.5e-85 322.0 1096 28.8
Psat6g173600 Pisum sativum HOM05D003470 ORTHO05D004157 4.8e-84 317.0 922 29.7
Haze_16781 Corylus avellana HOM05D003470 ORTHO05D004157 1.4e-83 315.5 911 32.7
MD12G1103600 Malus domestica HOM05D003470 ORTHO05D004157 1.8e-83 315.1 994 30.0
AUR62035493 Chenopodium quinoa HOM05D003470 ORTHO05D004157 2.4e-83 314.7 1129 27.8
Manes.10G053000 Manihot esculenta HOM05D003470 ORTHO05D004157 2.4e-83 314.7 983 30.1
Haze_19469 Corylus avellana HOM05D003470 ORTHO05D004157 4.0e-83 313.9 970 30.2
Nn2g13883 Nelumbo nucifera HOM05D003470 ORTHO05D004157 5.3e-83 313.5 1169 28.1
CiPaw.09G004500 Carya illinoinensis HOM05D003470 ORTHO05D004157 3.4e-82 310.8 966 30.3
Glyma.10G198700 Glycine max HOM05D003470 ORTHO05D004157 3.4e-82 310.8 1000 30.2
Phvul.007G145600 Phaseolus vulgaris HOM05D003470 ORTHO05D004157 2.2e-81 308.1 996 30.5
CSS0012208 Camellia sinensis var. sinensis HOM05D003470 ORTHO05D004157 2.1e-79 301.6 1055 28.7
QL07p041535 Quercus lobata HOM05D003470 ORTHO05D004157 6.0e-79 300.1 989 29.0
Atru.chr8.1716 Acer truncatum HOM05D003470 ORTHO05D004157 8.7e-78 296.2 964 30.9
Medtr1g090807 Medicago truncatula HOM05D003470 ORTHO05D004157 1.1e-77 295.8 910 29.7
Prupe.7G123700 Prunus persica HOM05D003470 ORTHO05D004157 3.7e-76 290.8 977 29.4
CSS0007947 Camellia sinensis var. sinensis HOM05D003470 ORTHO05D004157 1.1e-75 289.3 1055 28.4
CiPaw.10G002200 Carya illinoinensis HOM05D003470 ORTHO05D004157 5.3e-75 287.0 983 28.8
Thecc.05G074600 Theobroma cacao HOM05D003470 ORTHO05D004157 7.6e-74 283.1 971 29.4
TAR369G0117 Trochodendron aralioides HOM05D003470 ORTHO05D004157 9.9e-74 282.7 426 43.7
Zm00001eb404310 Zea mays HOM05D003470 ORTHO05D004157 1.3e-73 282.3 977 28.4
Lsat_1_v5_gn_2_103301 Lactuca sativa HOM05D003470 ORTHO05D004157 2.9e-73 281.2 999 28.4
RcHm_v2.0_Chr3g0471201 Rosa chinensis HOM05D003470 ORTHO05D004157 3.8e-73 280.8 980 29.7
VMungo0720G1037 Vigna mungo HOM05D003470 ORTHO05D004157 4.9e-73 280.4 1038 29.3
TWI74G0295 Tripterygium wilfordii HOM05D003470 ORTHO05D004157 5.5e-72 276.9 985 28.0
Lalb_Chr02g0151131 Lupinus albus HOM05D003470 ORTHO05D004157 3.5e-71 274.2 980 28.0
Dinv31268 Davidia involucrata HOM05D003470 ORTHO05D004157 2.3e-70 271.6 1032 29.0
ECA238G1102 Erigeron canadensis HOM05D003470 ORTHO05D004157 8.7e-70 269.6 943 27.9
Sopen11g003760 Solanum pennellii HOM05D003470 ORTHO05D004157 3.3e-69 267.7 1073 28.1
ECA233G4972 Erigeron canadensis HOM05D003470 ORTHO05D004157 4.3e-69 267.3 1053 26.9
Duzib128G1576 Durio zibethinus HOM05D003470 ORTHO05D004157 5.6e-69 266.9 955 29.0
Solyc11g007900.3 Solanum lycopersicum HOM05D003470 ORTHO05D004157 6.9e-67 260.0 1070 27.7
Phvul.007G226600 Phaseolus vulgaris HOM05D003470 ORTHO05D004157 1.2e-66 259.2 969 28.0
Sc20g0001480 Simmondsia chinensis HOM05D003470 ORTHO05D004157 3.4e-66 257.7 1200 25.2
GSVIVG01033709001 Vitis vinifera HOM05D003470 ORTHO05D004157 7.6e-66 256.5 969 28.9
Glyma.10G062800 Glycine max HOM05D003470 ORTHO05D004157 1.0e-65 256.1 973 28.2
CAN.G135.27 Capsicum annuum HOM05D003470 ORTHO05D004157 1.1e-64 252.7 1057 27.2
CANSAT78G0551 Cannabis sativa HOM05D003470 ORTHO05D004157 2.5e-64 251.5 888 28.8
FAN05G3818 Fragaria x ananassa HOM05D003470 ORTHO05D004157 3.2e-64 251.1 1015 27.5
HanXRQChr08g0218281 Helianthus annuus HOM05D003470 ORTHO05D004157 9.3e-64 249.6 950 26.9
Duzib093G1940 Durio zibethinus HOM05D003470 ORTHO05D004157 6.0e-63 246.9 883 28.4
PGR142G1299 Punica granatum HOM05D003470 ORTHO05D004157 1.3e-62 245.7 963 28.7
Nitab4.5_0000255g0010 Nicotiana tabacum HOM05D003470 ORTHO05D004157 3.9e-62 244.2 1089 26.3
Hund06764 Selenicereus undatus HOM05D003470 ORTHO05D004157 3.9e-62 244.2 976 26.9
TPR.G37812 Trifolium pratense HOM05D003470 ORTHO05D004157 1.1e-61 242.7 911 29.2
CDE06G1109 Ceratophyllum demersum HOM05D003470 ORTHO05D004157 7.4e-61 240.0 500 35.0
Gohir.A09G143900 Gossypium hirsutum HOM05D003470 ORTHO05D004157 7.4e-61 240.0 923 28.8
Rhsim03G0111500 Rhododendron simsii HOM05D003470 ORTHO05D004157 7.4e-61 240.0 1100 25.7
CsaV3_3G036530 Cucumis sativus L. HOM05D003470 ORTHO05D004157 3.7e-60 237.7 952 27.2
FAN09G0366 Fragaria x ananassa HOM05D003470 ORTHO05D004157 3.7e-60 237.7 992 27.4
FAN05G4328 Fragaria x ananassa HOM05D003470 ORTHO05D004157 1.4e-59 235.7 1011 27.7
Lj5g0018822 Lotus japonicus HOM05D003470 ORTHO05D004157 2.4e-59 235.0 926 26.7
Sc06g0002130 Simmondsia chinensis HOM05D003470 ORTHO05D004157 5.3e-59 233.8 1106 26.2
MELO3C009401.2 Cucumis melo HOM05D003470 ORTHO05D004157 1.5e-58 232.3 944 26.7
Lj5g0020068 Lotus japonicus HOM05D003470 ORTHO05D004157 1.5e-58 232.3 964 26.0
Nitab4.5_0004731g0020 Nicotiana tabacum HOM05D003470 ORTHO05D004157 2.6e-58 231.5 952 26.7
Zm00001eb391920 Zea mays HOM05D003470 ORTHO05D004157 2.9e-57 228.0 967 26.9
FvH4_6g17113 Fragaria vesca HOM05D003470 ORTHO05D004157 6.5e-57 226.9 1011 27.3
Nitab4.5_0000593g0330 Nicotiana tabacum HOM05D003470 ORTHO05D004157 2.5e-56 224.9 1086 26.5
ATR0043G047 Amborella trichopoda HOM05D003470 ORTHO05D004157 2.1e-55 221.9 992 27.1
Actinidia26639 Actinidia chinensis HOM05D003470 ORTHO05D004157 2.7e-55 221.5 1027 26.8
CDE03G0074 Ceratophyllum demersum HOM05D003470 ORTHO05D004157 2.7e-55 221.5 482 34.0
Solyc09g008530.3 Solanum lycopersicum HOM05D003470 ORTHO05D004157 2.7e-55 221.5 972 27.0
vmacro07200 Vaccinium macrocarpon HOM05D003470 ORTHO05D004157 2.7e-55 221.5 1104 25.6
Cpa.g.sc53.171 Carica papaya HOM05D003470 ORTHO05D004157 6.1e-55 220.3 960 28.1
Zm00001eb000590 Zea mays HOM05D003470 ORTHO05D004157 7.9e-55 219.9 930 26.5
FAN14G5641 Fragaria x ananassa HOM05D003470 ORTHO05D004157 1.0e-54 219.5 1011 27.0
Nitab4.5_0003906g0030 Nicotiana tabacum HOM05D003470 ORTHO05D004157 1.0e-54 219.5 976 25.9
Sopen09g003360 Solanum pennellii HOM05D003470 ORTHO05D004157 1.5e-53 215.7 982 26.3
Glyma.13G147300 Glycine max HOM05D003470 ORTHO05D004157 2.5e-53 214.9 967 26.0
Manes.08G016800 Manihot esculenta HOM05D003470 ORTHO05D004157 2.5e-53 214.9 931 26.7
Sabra06G0094700 Salix brachista HOM05D003470 ORTHO05D004157 7.4e-53 213.4 955 26.8
Potri.006G120400 Populus trichocarpa HOM05D003470 ORTHO05D004157 8.2e-52 209.9 955 27.4
HanXRQChr14g0456131 Helianthus annuus HOM05D003470 ORTHO05D004157 3.1e-51 208.0 973 25.1
MSTRG.19203 Avicennia marina HOM05D003470 ORTHO05D004157 7.7e-50 203.4 1060 26.0
PGSC0003DMG400003903 Solanum tuberosum HOM05D003470 ORTHO05D004157 1.0e-49 203.0 966 25.7
Peaxi162Scf00138g00213 Petunia axillaris HOM05D003470 ORTHO05D004157 1.1e-48 199.5 858 26.2
Ca_11537_v3 Cicer arietinum L. HOM05D003470 ORTHO05D004157 2.7e-47 194.9 971 23.8
Gorai.006G160300 Gossypium raimondii HOM05D003470 ORTHO05D004157 6.1e-47 193.7 931 26.3
Peaxi162Scf00543g00019 Petunia axillaris HOM05D003470 ORTHO05D004157 1.8e-46 192.2 1063 24.9
Oeu026700.1 Olea europaea HOM05D003470 ORTHO05D004157 6.7e-46 190.3 1050 25.3
TPR.G22446 Trifolium pratense HOM05D003470 ORTHO05D004157 8.8e-46 189.9 837 25.6
Cpa.g.sc5.136 Carica papaya HOM05D003470 ORTHO05D004157 3.7e-44 184.5 505 30.7
Rhsim03G0087000 Rhododendron simsii HOM05D003470 ORTHO05D004157 6.5e-41 173.7 1050 24.9
PSO478G4813 Papaver somniferum HOM05D003470 ORTHO05D004157 4.2e-40 171.0 359 35.9
SalBow3G0781 Salvia bowleyana HOM05D003470 ORTHO05D004157 2.1e-39 168.7 1062 23.3
ClCG10G019700 Citrullus lanatus HOM05D003470 ORTHO05D004157 3.6e-39 167.9 965 24.9
Medtr1g062200 Medicago truncatula HOM05D003470 ORTHO05D004157 2.3e-38 165.2 837 24.9
CAN.G1038.4 Capsicum annuum HOM05D003470 ORTHO05D004157 6.7e-38 163.7 819 26.5
SEGI_27097 Sequoiadendron giganteum HOM05D003470 ORTHO05D004157 1.7e-36 159.1 1067 23.0
HPP92_008497 Vanilla planifolia HOM05D003470 ORTHO05D004157 4.8e-36 157.5 1102 23.3
Haze_16782 Corylus avellana HOM05D003470 ORTHO05D004157 9.1e-35 153.3 607 30.8
Gohir.D09G139850 Gossypium hirsutum HOM05D003470 ORTHO05D004157 1.2e-34 152.9 283 37.5
Lsat_1_v5_gn_6_28040 Lactuca sativa HOM05D003470 ORTHO05D004157 1.2e-34 152.9 506 29.6
Cc06_g04710 Coffea canephora HOM05D003470 ORTHO05D004157 1.6e-34 152.5 968 23.1
Actinidia28929 Actinidia chinensis HOM05D003470 ORTHO05D004157 4.5e-34 151.0 316 35.4
VMungo0720G2647 Vigna mungo HOM05D003470 ORTHO05D000001 4.5e-34 151.0 936 23.2
DCAR_015016 Daucus carota HOM05D005722 ORTHO05D007934 2.9e-33 148.3 933 25.1
Actinidia28930 Actinidia chinensis HOM05D003470 ORTHO05D004157 5.0e-33 147.5 681 26.9
Atru.chr12.915 Acer truncatum HOM05D003470 ORTHO05D004157 8.0e-31 140.2 198 43.9
Migut.J00469 Erythranthe guttata HOM05D003470 ORTHO05D004157 8.8e-30 136.7 935 23.4
arahy.Tifrunner.gnm1.ann1.8W3QW7 Arachis hypogaea HOM05D003470 ORTHO05D004157 1.2e-29 136.3 860 22.4
arahy.Tifrunner.gnm1.ann1.FKX1H2 Arachis hypogaea HOM05D003470 ORTHO05D004157 1.2e-29 136.3 860 22.4
Ca_11528_v3 Cicer arietinum L. HOM05D003470 ORTHO05D004157 1.2e-29 136.3 681 23.6
Sed0013053 Sechium edule HOM05D003470 ORTHO05D004157 1.5e-29 136.0 869 23.6
Lj3C994T12 Lonicera japonica HOM05D003470 ORTHO05D004157 1.1e-27 129.8 949 23.1
AagrBONN_evm.TU.Sc2ySwM_344.3028 Anthoceros agrestis HOM05D003470 ORTHO05D004157 1.4e-27 129.4 555 26.3
ECA233G0686 Erigeron canadensis HOM05D003470 ORTHO05D004157 1.8e-27 129.0 923 22.4
SalBow6G0046 Salvia bowleyana HOM05D003470 ORTHO05D004157 2.4e-27 128.6 910 22.7
vmacro07330 Vaccinium macrocarpon HOM05D003470 ORTHO05D004157 3.5e-26 124.8 1057 22.4
Psat6g076760 Pisum sativum HOM05D003470 ORTHO05D004157 1.3e-25 122.9 890 22.6
Sed0006633 Sechium edule HOM05D003470 ORTHO05D004157 1.7e-25 122.5 953 23.0
CDE02G3590 Ceratophyllum demersum HOM05D003470 ORTHO05D004157 4.2e-24 117.9 578 24.2
arahy.Tifrunner.gnm1.ann1.08YI9Q Arachis hypogaea HOM05D003470 ORTHO05D004157 9.4e-24 116.7 342 29.2
Atru.chr12.917 Acer truncatum HOM05D003470 ORTHO05D004157 6.8e-22 110.5 355 30.1
Os10g0547000 Oryza sativa ssp. japonica HOM05D003470 ORTHO05D004157 8.8e-22 110.2 344 28.8
AUR62019445 Chenopodium quinoa HOM05D002464 ORTHO05D002530 1.5e-21 109.4 179 38.0
Lsat_1_v5_gn_8_17720 Lactuca sativa HOM05D003470 ORTHO05D004157 1.4e-19 102.8 358 27.1
CDE02G1862 Ceratophyllum demersum HOM05D003470 ORTHO05D004157 5.4e-19 100.9 188 35.6
Eucgr.A01602 Eucalyptus grandis HOM05D003470 ORTHO05D004157 1.7e-17 95.9 907 21.8
COL.COLO4_22242 Corchorus olitorius HOM05D003470 ORTHO05D004157 3.8e-17 94.7 932 23.1
Gohir.D10G208200 Gossypium hirsutum HOM05D003470 ORTHO05D022439 1.1e-16 93.2 355 28.2
Atru.chr12.916 Acer truncatum HOM05D003470 ORTHO05D004157 4.2e-16 91.3 263 27.4
Lj3A935T49 Lonicera japonica HOM05D003470 ORTHO05D004157 9.5e-16 90.1 815 23.1
SEGI_39816 Sequoiadendron giganteum HOM05D003470 ORTHO05D004157 2.1e-15 89.0 955 20.9
Gorai.011G233900 Gossypium raimondii HOM05D003470 ORTHO05D022439 3.6e-15 88.2 431 26.9
Gohir.D09G139800 Gossypium hirsutum HOM05D003470 ORTHO05D004157 1.0e-14 86.7 376 26.9
Thecc.10G089600 Theobroma cacao HOM05D003470 ORTHO05D022439 3.0e-14 85.1 397 27.0
Gohir.A10G200300 Gossypium hirsutum HOM05D003470 ORTHO05D022439 4.0e-14 84.7 431 26.5
TAR369G0811 Trochodendron aralioides HOM05D003470 ORTHO05D004157 6.8e-14 84.0 719 22.4
COL.COLO4_32886 Corchorus olitorius HOM05D003470 ORTHO05D022439 1.2e-13 83.2 179 32.4
Duzib128G1410 Durio zibethinus HOM05D003470 ORTHO05D022439 5.7e-13 80.9 534 24.3
TWI38G0799 Tripterygium wilfordii HOM05D003470 ORTHO05D004157 7.5e-13 80.5 331 25.7
HanXRQChr13g0400491 Helianthus annuus HOM05D003470 ORTHO05D004157 6.3e-12 77.4 946 20.7
SGA_v2.0_scaffold40G15455 Striga asiatica HOM05D003470 ORTHO05D003317 6.3e-12 77.4 258 29.5
Os03g0107400 Oryza sativa ssp. japonica HOM05D003470 ORTHO05D004157 1.8e-11 75.9 433 24.9
SMO301G0074 Selaginella moellendorffii HOM05D004450 ORTHO05D004157 4.1e-11 74.7 528 22.0
Cpa.g.sc850.1 Carica papaya HOM05D003470 ORTHO05D004157 5.4e-11 74.3 408 25.0
unitig_27.g25387 Utricularia gibba HOM05D003470 ORTHO05D004157 5.9e-10 70.9 392 25.5
SEGI_22593 Sequoiadendron giganteum HOM05D001888 ORTHO05D001842 2.5e-08 65.5 795 21.1
SEGI_12183 Sequoiadendron giganteum HOM05D001888 ORTHO05D001842 2.8e-07 62.0 870 20.1
Migut.F01673 Erythranthe guttata HOM05D003470 ORTHO05D004157 3.6e-07 61.6 555 22.0
Psat6g076800 Pisum sativum HOM05D003470 ORTHO05D004157 3.6e-07 61.6 142 32.4
Phvul.002G287700 Phaseolus vulgaris HOM05D001888 ORTHO05D001842 8.0e-07 60.5 674 23.0
HanXRQChr07g0186251 Helianthus annuus HOM05D003470 ORTHO05D004157 1.8e-06 59.3 236 28.4
ClCG02G016160 Citrullus lanatus HOM05D004923 ORTHO05D005940 6.8e-06 57.4 554 22.7


User provided reference genes

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