Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG08G007450 Citrullus lanatus HOM05D003701 ORTHO05D004771 2.1e-247 858.6 440 100.0
MELO3C019790.2 Cucumis melo HOM05D003701 ORTHO05D004771 1.0e-241 839.7 440 97.7
CsaV3_6G036360 Cucumis sativus L. HOM05D003701 ORTHO05D004771 5.0e-241 837.4 440 97.3
Sed0016616 Sechium edule HOM05D003701 ORTHO05D004771 8.0e-231 803.5 440 93.0
Gohir.A10G206500 Gossypium hirsutum HOM05D003701 ORTHO05D004771 2.1e-199 699.1 432 80.3
Thecc.10G072600 Theobroma cacao HOM05D003701 ORTHO05D004771 6.2e-199 697.6 428 80.6
Gohir.D10G214600 Gossypium hirsutum HOM05D003701 ORTHO05D004771 1.4e-198 696.4 432 80.1
CANSAT56G3258 Cannabis sativa HOM05D003701 ORTHO05D004771 1.2e-197 693.3 430 80.2
CiPaw.02G174300 Carya illinoinensis HOM05D003701 ORTHO05D004771 1.2e-197 693.3 442 80.8
Duzib106G0278 Durio zibethinus HOM05D003701 ORTHO05D004771 1.5e-197 693.0 428 79.7
Gohir.D05G297000 Gossypium hirsutum HOM05D003701 ORTHO05D004771 2.0e-197 692.6 428 79.9
Gorai.009G314200 Gossypium raimondii HOM05D003701 ORTHO05D004771 2.0e-197 692.6 428 79.9
VMungo0720G1162 Vigna mungo HOM05D003701 ORTHO05D004771 2.0e-197 692.6 430 79.5
arahy.Tifrunner.gnm1.ann1.X76XU5 Arachis hypogaea HOM05D003701 ORTHO05D004771 5.8e-197 691.0 429 79.5
Gohir.A05G297100 Gossypium hirsutum HOM05D003701 ORTHO05D004771 5.8e-197 691.0 428 79.4
arahy.Tifrunner.gnm1.ann1.V7IKH4 Arachis hypogaea HOM05D003701 ORTHO05D004771 9.9e-197 690.3 429 79.5
Glyma.20G179500 Glycine max HOM05D003701 ORTHO05D004771 2.2e-196 689.1 435 78.2
Atru.chr12.740 Acer truncatum HOM05D003701 ORTHO05D004771 3.8e-196 688.3 442 78.7
FAN03G0046 Fragaria x ananassa HOM05D003701 ORTHO05D004771 4.9e-196 688.0 428 82.0
FAN10G2919 Fragaria x ananassa HOM05D003701 ORTHO05D004771 6.4e-196 687.6 428 82.0
TWI74G0111 Tripterygium wilfordii HOM05D003701 ORTHO05D004771 8.4e-196 687.2 439 78.6
TWI74G0263 Tripterygium wilfordii HOM05D003701 ORTHO05D004771 8.4e-196 687.2 439 78.6
Glyma.10G211400 Glycine max HOM05D003701 ORTHO05D004771 1.1e-195 686.8 435 77.5
Potri.010G221600 Populus trichocarpa HOM05D003701 ORTHO05D004771 1.4e-195 686.4 440 79.5
MD01G1108900 Malus domestica HOM05D003701 ORTHO05D004771 1.9e-195 686.0 434 79.7
FvH4_7g19670 Fragaria vesca HOM05D003701 ORTHO05D004771 3.2e-195 685.3 428 82.0
FAN06G0474 Fragaria x ananassa HOM05D003701 ORTHO05D004771 4.2e-195 684.9 431 81.2
Ciclev10031547m.g Citrus clementina HOM05D003701 ORTHO05D004771 5.4e-195 684.5 438 79.5
TPR.G1904 Trifolium pratense HOM05D003701 ORTHO05D004771 1.2e-194 683.3 440 78.0
Ca_10573_v3 Cicer arietinum L. HOM05D003701 ORTHO05D004771 1.6e-194 682.9 438 76.7
Ca_29596_v3 Cicer arietinum L. HOM05D003701 ORTHO05D004771 1.6e-194 682.9 438 76.7
MD07G1175200 Malus domestica HOM05D003701 ORTHO05D004771 1.6e-194 682.9 435 79.8
RcHm_v2.0_Chr1g0363491 Rosa chinensis HOM05D003701 ORTHO05D004771 6.0e-194 681.0 440 79.8
Potri.008G040700 Populus trichocarpa HOM05D003701 ORTHO05D004771 1.1e-192 676.8 440 78.9
Sabra08G0027700 Salix brachista HOM05D003701 ORTHO05D004771 1.1e-192 676.8 446 78.9
Hund12041 Selenicereus undatus HOM05D003701 ORTHO05D004771 2.5e-192 675.6 429 78.8
TAR623G1268 Trochodendron aralioides HOM05D003701 ORTHO05D004771 3.3e-192 675.2 430 79.8
THA.LOC104827296 Tarenaya hassleriana HOM05D003701 ORTHO05D004771 4.3e-192 674.9 428 79.2
Phvul.007G094200 Phaseolus vulgaris HOM05D003701 ORTHO05D004771 7.3e-192 674.1 428 77.3
Manes.10G045200 Manihot esculenta HOM05D003701 ORTHO05D004771 9.6e-192 673.7 429 78.6
GSVIVG01016288001 Vitis vinifera HOM05D003701 ORTHO05D004771 1.6e-191 672.9 441 77.1
Medtr1g095250 Medicago truncatula HOM05D003701 ORTHO05D004771 2.8e-191 672.2 437 76.7
TAR633G1876 Trochodendron aralioides HOM05D003701 ORTHO05D004771 2.8e-191 672.2 429 78.3
Sp1g35740 Schrenkiella parvula HOM05D003701 ORTHO05D004771 3.6e-191 671.8 428 78.3
BcaB02g11304 Brassica carinata HOM05D003701 ORTHO05D004771 6.2e-191 671.0 434 77.2
A08p04400 Brassica napus HOM05D003701 ORTHO05D004771 8.1e-191 670.6 428 78.3
BolC8t47272H Brassica oleracea HOM05D003701 ORTHO05D004771 8.1e-191 670.6 428 78.3
BcaC07g37102 Brassica carinata HOM05D003701 ORTHO05D004771 1.4e-190 669.8 428 78.3
C08p04710 Brassica napus HOM05D003701 ORTHO05D004771 1.4e-190 669.8 428 78.3
BraA08t32466Z Brassica rapa HOM05D003701 ORTHO05D004771 1.8e-190 669.5 428 78.0
BcaB04g17381 Brassica carinata HOM05D003701 ORTHO05D004771 4.0e-190 668.3 428 78.3
QL08p056106 Quercus lobata HOM05D003701 ORTHO05D004771 6.9e-190 667.5 427 79.4
Thhalv10011486m.g Eutrema salsugineum HOM05D003701 ORTHO05D004771 9.0e-190 667.2 428 77.6
Cpa.g.sc53.71 Carica papaya HOM05D003701 ORTHO05D004771 1.5e-189 666.4 449 76.4
BcaC05g27549 Brassica carinata HOM05D003701 ORTHO05D004771 3.4e-189 665.2 428 77.6
C05p35350 Brassica napus HOM05D003701 ORTHO05D004771 3.4e-189 665.2 428 77.6
BolC5t32248H Brassica oleracea HOM05D003701 ORTHO05D004771 3.4e-189 665.2 428 77.6
MBI10_g04889_MAGBIO Magnolia biondii HOM05D003701 ORTHO05D004771 4.4e-189 664.8 438 76.5
AL1G55580 Arabidopsis lyrata HOM05D003701 ORTHO05D004771 5.8e-189 664.5 429 77.2
Gorai.011G240100 Gossypium raimondii HOM05D003701 ORTHO05D004771 5.8e-189 664.5 428 76.4
Sabra10G0171500 Salix brachista HOM05D003701 ORTHO05D004771 1.7e-188 662.9 489 71.6
A05p20860 Brassica napus HOM05D003701 ORTHO05D004771 2.2e-188 662.5 428 77.3
BraA05t20991Z Brassica rapa HOM05D003701 ORTHO05D004771 2.2e-188 662.5 428 77.3
Carub.0001s3800 Capsella rubella HOM05D003701 ORTHO05D004771 2.9e-188 662.1 429 76.9
CARHR038850 Cardamine hirsuta HOM05D003701 ORTHO05D004771 6.4e-188 661.0 428 76.6
Lj5g0008768 Lotus japonicus HOM05D003701 ORTHO05D004771 8.4e-188 660.6 429 76.7
AT1G48850 Arabidopsis thaliana HOM05D003701 ORTHO05D004771 1.4e-187 659.8 428 76.9
Eucgr.G02824 Eucalyptus grandis HOM05D003701 ORTHO05D004771 1.9e-187 659.4 428 76.9
FAN01G1080 Fragaria x ananassa HOM05D003701 ORTHO05D004771 1.9e-187 659.4 467 74.5
Lalb_Chr06g0162271 Lupinus albus HOM05D003701 ORTHO05D004771 1.9e-187 659.4 430 76.3
Gohir.A10G206400 Gossypium hirsutum HOM05D003701 ORTHO05D004771 4.2e-187 658.3 428 75.2
Dinv11780 Davidia involucrata HOM05D003701 ORTHO05D004771 5.4e-187 657.9 438 76.3
Sc09g0006470 Simmondsia chinensis HOM05D003701 ORTHO05D004771 7.1e-187 657.5 430 77.2
Lsat_1_v5_gn_2_114381 Lactuca sativa HOM05D003701 ORTHO05D004771 9.3e-187 657.1 430 78.4
Nn2g13085 Nelumbo nucifera HOM05D003701 ORTHO05D004771 9.3e-187 657.1 430 76.7
Gorai.011G240200 Gossypium raimondii HOM05D003701 ORTHO05D004771 1.2e-186 656.8 393 81.7
Ah.06g192010 Amaranthus hybridus HOM05D003701 ORTHO05D004771 2.1e-186 656.0 440 75.2
FAN10G2344 Fragaria x ananassa HOM05D003701 ORTHO05D004771 3.5e-186 655.2 428 79.4
CSS0025729 Camellia sinensis var. sinensis HOM05D003701 ORTHO05D004771 4.6e-186 654.8 429 76.9
Sc06g0004590 Simmondsia chinensis HOM05D003701 ORTHO05D004771 4.6e-186 654.8 429 76.7
MBI02_g43493_MAGBIO Magnolia biondii HOM05D003701 ORTHO05D004771 7.8e-186 654.1 429 76.5
ATR0115G006 Amborella trichopoda HOM05D003701 ORTHO05D004771 1.3e-185 653.3 436 75.5
CDE04G2332 Ceratophyllum demersum HOM05D003701 ORTHO05D004771 1.3e-185 653.3 430 76.3
arahy.Tifrunner.gnm1.ann1.6FL4NC Arachis hypogaea HOM05D003701 ORTHO05D004771 1.7e-185 652.9 433 75.8
Hma1.2p1_1004F.1_g246800 Hydrangea macrophylla HOM05D003701 ORTHO05D004771 1.5e-184 649.8 435 76.1
Aa31LG10G4830 Aethionema arabicum HOM05D003701 ORTHO05D004771 1.9e-184 649.4 441 74.1
HanXRQChr09g0249701 Helianthus annuus HOM05D003701 ORTHO05D004771 1.9e-184 649.4 436 75.9
Nitab4.5_0005490g0010 Nicotiana tabacum HOM05D003701 ORTHO05D004771 3.3e-184 648.7 431 76.6
AUR62041045 Chenopodium quinoa HOM05D003701 ORTHO05D004771 5.6e-184 647.9 429 76.7
Lalb_Chr02g0142141 Lupinus albus HOM05D003701 ORTHO05D004771 5.6e-184 647.9 433 75.1
PSO339G3023 Papaver somniferum HOM05D003701 ORTHO05D004771 5.6e-184 647.9 403 78.7
DCAR_015315 Daucus carota HOM05D003701 ORTHO05D004771 9.6e-184 647.1 433 76.4
Sopen04g019270 Solanum pennellii HOM05D003701 ORTHO05D004771 9.6e-184 647.1 435 74.9
Solyc04g049350.4 Solanum lycopersicum HOM05D003701 ORTHO05D004771 1.3e-183 646.7 434 74.4
MSTRG.8153 Avicennia marina HOM05D003701 ORTHO05D004771 1.6e-183 646.4 430 75.6
PSO063G5795 Papaver somniferum HOM05D003701 ORTHO05D004771 1.6e-183 646.4 403 78.4
Aqoxy1G01249 Aquilegia oxysepala HOM05D003701 ORTHO05D004771 3.6e-183 645.2 428 76.4
PGSC0003DMG400024392 Solanum tuberosum HOM05D003701 ORTHO05D004771 4.8e-183 644.8 430 76.0
HanXRQChr15g0496661 Helianthus annuus HOM05D003701 ORTHO05D004771 6.2e-183 644.4 441 74.6
Peaxi162Scf00747g00122 Petunia axillaris HOM05D003701 ORTHO05D004771 3.1e-182 642.1 430 76.3
MSTRG.367 Avicennia marina HOM05D003701 ORTHO05D004771 9.0e-182 640.6 430 74.4
AUR62037661 Chenopodium quinoa HOM05D003701 ORTHO05D004771 9.0e-182 640.6 449 73.5
PGR142G1908 Punica granatum HOM05D003701 ORTHO05D004771 7.6e-181 637.5 428 75.7
PGSC0003DMG400016016 Solanum tuberosum HOM05D003701 ORTHO05D004771 2.9e-180 635.6 429 74.8
SGA_v2.0_scaffold51G18675 Striga asiatica HOM05D003701 ORTHO05D004771 2.9e-180 635.6 437 74.4
Actinidia38848 Actinidia chinensis HOM05D003701 ORTHO05D004771 3.8e-180 635.2 430 75.1
Migut.F01774 Erythranthe guttata HOM05D003701 ORTHO05D004771 4.9e-180 634.8 430 73.7
CAN.G186.45 Capsicum annuum HOM05D003701 ORTHO05D004771 8.4e-180 634.0 429 74.6
Sopen04g004770 Solanum pennellii HOM05D003701 ORTHO05D004771 1.1e-179 633.6 430 73.5
ECA232G2521 Erigeron canadensis HOM05D003701 ORTHO05D004771 3.2e-179 632.1 432 75.9
Lj1A914T43 Lonicera japonica HOM05D003701 ORTHO05D004771 5.4e-179 631.3 429 74.8
Solyc04g009620.4 Solanum lycopersicum HOM05D003701 ORTHO05D004771 7.1e-179 630.9 430 73.5
EL10Ac2g03249 Beta vulgaris HOM05D003701 ORTHO05D004771 2.1e-178 629.4 429 75.1
Duzib114G1041 Durio zibethinus HOM05D003701 ORTHO05D004771 3.5e-178 628.6 432 73.8
Nitab4.5_0001029g0070 Nicotiana tabacum HOM05D003701 ORTHO05D004771 1.8e-177 626.3 459 71.7
HPP92_012666 Vanilla planifolia HOM05D003701 ORTHO05D004771 5.6e-176 621.3 426 73.2
Os03g0254800 Oryza sativa ssp. japonica HOM05D003701 ORTHO05D004771 1.8e-174 616.3 394 75.9
Gohir.D05G297025 Gossypium hirsutum HOM05D003701 ORTHO05D004771 4.0e-174 615.1 430 72.8
vmacro04876 Vaccinium macrocarpon HOM05D003701 ORTHO05D004771 5.3e-174 614.8 544 61.4
SEGI_31492 Sequoiadendron giganteum HOM05D003701 ORTHO05D004771 2.0e-173 612.8 430 73.0
Rhsim09G0152400 Rhododendron simsii HOM05D003701 ORTHO05D004771 1.4e-171 606.7 506 63.8
unitig_899.g14441 Utricularia gibba HOM05D003701 ORTHO05D004771 4.2e-171 605.1 437 71.6
Actinidia03057 Actinidia chinensis HOM05D003701 ORTHO05D004771 2.1e-170 602.8 429 71.1
CSS0011231 Camellia sinensis var. sinensis HOM05D003701 ORTHO05D004771 4.6e-170 601.7 430 70.9
SalBow4G1339 Salvia bowleyana HOM05D003701 ORTHO05D004771 1.8e-169 599.7 390 75.6
AagrBONN_evm.TU.Sc2ySwM_369.393 Anthoceros agrestis HOM05D003701 ORTHO05D004771 1.6e-167 593.2 397 75.8
Mapoly0007s0052 Marchantia polymorpha HOM05D003701 ORTHO05D004771 1.1e-166 590.5 406 74.1
DCAR_012659 Daucus carota HOM05D003701 ORTHO05D004771 1.4e-166 590.1 379 76.5
SMO146G0105 Selaginella moellendorffii HOM05D003701 ORTHO05D004771 2.4e-166 589.3 413 71.7
Migut.F01773 Erythranthe guttata HOM05D003701 ORTHO05D004771 3.1e-166 589.0 385 74.5
Prupe.2G214400 Prunus persica HOM05D003701 ORTHO05D004771 2.0e-165 586.3 362 80.9
CAN.G186.44 Capsicum annuum HOM05D003701 ORTHO05D004771 4.9e-164 581.6 386 73.8
GSVIVG01025176001 Vitis vinifera HOM05D003701 ORTHO05D004771 2.5e-163 579.3 428 68.7
arahy.Tifrunner.gnm1.ann1.914CGH Arachis hypogaea HOM05D003701 ORTHO05D004771 9.3e-163 577.4 342 81.3
Psat6g184400 Pisum sativum HOM05D003701 ORTHO05D004771 3.9e-161 572.0 362 77.3
CiPaw.01G273500 Carya illinoinensis HOM05D003701 ORTHO05D004771 9.7e-160 567.4 337 84.6
CANSAT78G2428 Cannabis sativa HOM05D003701 ORTHO05D004771 2.2e-151 539.7 389 69.4
Oeu027479.1 Olea europaea HOM05D003701 ORTHO05D004771 2.9e-148 529.3 344 77.3
Zm00001eb011020 Zea mays HOM05D003701 ORTHO05D004771 1.6e-146 523.5 330 77.9
Oeu007390.4 Olea europaea HOM05D003701 ORTHO05D004771 2.1e-146 523.1 335 76.7
MCO05G587 Micromonas commoda HOM05D003701 ORTHO05D004771 6.1e-146 521.5 370 70.8
CDE07G1562 Ceratophyllum demersum HOM05D003701 ORTHO05D004771 8.8e-145 517.7 430 64.2
Cre03.g145747 Chlamydomonas reinhardtii HOM05D003701 ORTHO05D004771 4.4e-144 515.4 371 70.4
Dinv31329 Davidia involucrata HOM05D003701 ORTHO05D004771 3.1e-142 509.2 337 76.6
PRCOL_00001179 Prasinoderma coloniale HOM05D003701 ORTHO05D004771 1.3e-140 503.8 393 67.7
unitig_736.g22517 Utricularia gibba HOM05D003701 ORTHO05D004771 4.7e-138 495.4 426 61.5
Eucgr.J01090 Eucalyptus grandis HOM05D003701 ORTHO05D004771 1.1e-136 490.7 346 72.5
COL.COLO4_23690 Corchorus olitorius HOM05D003701 ORTHO05D004771 2.4e-126 456.4 261 83.1
Zm00001eb398410 Zea mays HOM05D003701 ORTHO05D004771 4.7e-122 442.2 329 66.9
Pp3c1_35940 Physcomitrium patens HOM05D003701 ORTHO05D004771 1.6e-114 417.2 293 72.0
COL.COLO4_23691 Corchorus olitorius HOM05D003701 ORTHO05D004771 1.8e-113 413.7 257 80.2
CBR_g41627 Chara braunii HOM05D003701 ORTHO05D004771 4.5e-109 399.1 378 57.4
Haze_16899 Corylus avellana HOM05D003701 ORTHO05D004771 7.8e-101 371.7 230 81.3
Gohir.D10G214532 Gossypium hirsutum HOM05D003701 ORTHO05D004771 7.5e-96 355.1 243 72.4
Cc09_g02030 Coffea canephora HOM05D003701 ORTHO05D004771 1.5e-88 330.9 232 72.0
Haze_27259 Corylus avellana HOM05D003701 ORTHO05D004771 3.1e-81 306.6 367 46.3
Cc09_g02040 Coffea canephora HOM05D003701 ORTHO05D004771 5.8e-80 302.4 182 81.3
Gohir.D10G214466 Gossypium hirsutum HOM05D003701 ORTHO05D004771 7.6e-80 302.0 181 80.1
Cfa022484 Carpinus fangiana HOM05D003701 ORTHO05D004771 1.7e-79 300.8 352 49.1
SHI12194 Sapria himalayana HOM05D003666 ORTHO05D004770 3.3e-67 260.0 154 79.9
RcHm_v2.0_Chr4g0427911 Rosa chinensis HOM05D003701 ORTHO05D004771 3.4e-64 250.0 221 65.6
FAN12G0728 Fragaria x ananassa HOM05D003701 ORTHO05D004771 1.5e-59 234.6 244 58.6
TAR636G0034 Trochodendron aralioides HOM05D003701 ORTHO05D004771 3.3e-59 233.4 186 61.8
TAR636G0416 Trochodendron aralioides HOM05D003701 ORTHO05D004771 3.3e-59 233.4 186 61.8
MSTRG.366 Avicennia marina HOM05D003701 ORTHO05D004771 2.1e-58 230.7 146 76.7
MD01G1109200 Malus domestica HOM05D003701 ORTHO05D004771 5.1e-44 183.0 157 64.3
Glyma.14G185633 Glycine max HOM05D003701 ORTHO05D004771 1.6e-42 177.9 101 85.1
FAN17G1952 Fragaria x ananassa HOM05D003701 ORTHO05D004771 2.0e-40 171.0 297 43.1
SMO173G0015 Selaginella moellendorffii HOM05D003701 ORTHO05D004771 1.7e-31 141.4 220 45.9
QL07p006097 Quercus lobata HOM05D003701 ORTHO05D030296 1.8e-28 131.3 82 81.7
VMungo0647G0194 Vigna mungo HOM05D003701 ORTHO05D432816 9.4e-22 109.0 89 65.2
Oeu052763.1 Olea europaea HOM05D003701 ORTHO05D030296 8.0e-21 105.9 60 85.0
FAN01G1877 Fragaria x ananassa HOM05D003701 ORTHO05D208017 8.8e-20 102.4 79 69.6
QL07p006183 Quercus lobata HOM05D003701 ORTHO05D030296 8.8e-20 102.4 63 82.5
QL09p045974 Quercus lobata HOM05D003701 ORTHO05D030296 8.8e-20 102.4 63 82.5
FAN12G0587 Fragaria x ananassa HOM05D003701 ORTHO05D004771 7.5e-19 99.4 90 57.8
Medtr0368s0020 Medicago truncatula HOM05D003701 ORTHO05D026922 2.9e-15 87.4 48 81.2
Glyma.14G185666 Glycine max HOM05D003701 ORTHO05D026922 1.5e-14 85.1 50 78.0
Oeu043945.1 Olea europaea HOM05D003701 ORTHO05D004771 3.6e-13 80.5 46 80.4
C02p38530 Brassica napus HOM05D003701 ORTHO05D101262 5.4e-09 66.6 74 50.0
BolC2t09870H Brassica oleracea HOM05D003701 ORTHO05D041413 2.0e-08 64.7 74 50.0
C05p40290 Brassica napus HOM05D003701 ORTHO05D041413 5.9e-08 63.2 74 50.0
CBR_g74262 Chara braunii HOM05D003701 ORTHO05D004771 5.9e-08 63.2 43 72.1
Rhsim05G0028600 Rhododendron simsii HOM05D000745 ORTHO05D000641 1.5e-06 58.5 28 89.3
MBI09_g06128_MAGBIO Magnolia biondii HOM05D018637 ORTHO05D012924 4.2e-06 57.0 45 62.2
Actinidia38274 Actinidia chinensis HOM05D003701 ORTHO05D012924 5.5e-06 56.6 38 68.4


User provided reference genes

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