Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG08G007340 Citrullus lanatus HOM05D005921 ORTHO05D007374 3.1e-292 1007.7 487 100.0
CsaV3_6G004990 Cucumis sativus L. HOM05D005921 ORTHO05D007374 3.6e-264 914.4 487 91.2
Sed0007537 Sechium edule HOM05D005921 ORTHO05D007374 2.7e-248 861.7 487 85.2
MELO3C019977.2 Cucumis melo HOM05D005921 ORTHO05D007374 1.6e-219 766.1 388 94.1
MD05G1033700 Malus domestica HOM05D005921 ORTHO05D007374 6.9e-191 671.0 491 67.0
Thecc.08G159700 Theobroma cacao HOM05D005921 ORTHO05D007374 2.0e-190 669.5 475 68.0
Gohir.A05G270866 Gossypium hirsutum HOM05D005921 ORTHO05D007374 4.9e-189 664.8 456 69.1
CANSAT25G0895 Cannabis sativa HOM05D005921 ORTHO05D007374 6.4e-189 664.5 484 67.6
Prupe.8G040700 Prunus persica HOM05D005921 ORTHO05D007374 6.4e-189 664.5 490 67.1
GSVIVG01001409001 Vitis vinifera HOM05D005921 ORTHO05D007374 1.1e-188 663.7 490 66.7
Cfa018279 Carpinus fangiana HOM05D005921 ORTHO05D007374 4.2e-188 661.8 450 69.6
Gorai.009G286300 Gossypium raimondii HOM05D005921 ORTHO05D007374 9.3e-188 660.6 488 65.6
Atru.chr13.2001 Acer truncatum HOM05D005921 ORTHO05D007374 2.1e-187 659.4 450 70.7
Lalb_Chr02g0141581 Lupinus albus HOM05D005921 ORTHO05D007374 1.7e-186 656.4 451 67.6
Lj5g0014499 Lotus japonicus HOM05D005921 ORTHO05D007374 3.9e-186 655.2 490 64.3
Rhsim11G0087800 Rhododendron simsii HOM05D005921 ORTHO05D007374 5.1e-186 654.8 490 67.1
TPR.G17011 Trifolium pratense HOM05D005921 ORTHO05D007374 6.6e-186 654.4 495 63.4
CiPaw.15G012300 Carya illinoinensis HOM05D005921 ORTHO05D007374 1.9e-185 652.9 489 64.8
Ca_10662_v3 Cicer arietinum L. HOM05D005921 ORTHO05D007374 1.9e-185 652.9 488 65.0
Lalb_Chr06g0161731 Lupinus albus HOM05D005921 ORTHO05D007374 9.6e-185 650.6 463 66.1
arahy.Tifrunner.gnm1.ann1.9JVG50 Arachis hypogaea HOM05D005921 ORTHO05D007374 1.3e-184 650.2 496 63.9
Glyma.10G221400 Glycine max HOM05D005921 ORTHO05D007374 1.3e-184 650.2 492 62.6
Psat0s899g0040 Pisum sativum HOM05D005921 ORTHO05D007374 1.3e-184 650.2 484 64.0
Glyma.20G170200 Glycine max HOM05D005921 ORTHO05D007374 2.1e-184 649.4 491 62.9
Hma1.2p1_0358F.1_g134840 Hydrangea macrophylla HOM05D005921 ORTHO05D007374 2.8e-184 649.0 490 65.3
Medtr1g097955 Medicago truncatula HOM05D005921 ORTHO05D007374 3.6e-184 648.7 476 64.9
RcHm_v2.0_Chr6g0274201 Rosa chinensis HOM05D005921 ORTHO05D007374 6.2e-184 647.9 490 65.9
arahy.Tifrunner.gnm1.ann1.TV90AE Arachis hypogaea HOM05D005921 ORTHO05D007374 3.4e-182 642.1 459 66.2
Duzib116G0900 Durio zibethinus HOM05D005921 ORTHO05D007374 5.8e-182 641.3 429 70.6
FAN24G0054 Fragaria x ananassa HOM05D005921 ORTHO05D007374 5.8e-182 641.3 491 64.6
AL2G31250 Arabidopsis lyrata HOM05D005921 ORTHO05D007374 6.4e-181 637.9 474 64.3
Eucgr.F04188 Eucalyptus grandis HOM05D005921 ORTHO05D007374 8.4e-181 637.5 487 63.7
Sp5g26720 Schrenkiella parvula HOM05D005921 ORTHO05D007374 1.9e-180 636.3 476 64.7
Potri.005G197000 Populus trichocarpa HOM05D005921 ORTHO05D007374 9.3e-180 634.0 488 63.7
FvH4_2g13020 Fragaria vesca HOM05D005921 ORTHO05D007374 1.2e-179 633.6 491 64.2
vmacro01494 Vaccinium macrocarpon HOM05D005921 ORTHO05D007374 3.9e-178 628.6 448 67.2
AT1G71696 Arabidopsis thaliana HOM05D005921 ORTHO05D007374 5.1e-178 628.2 473 63.4
BcaC03g15284 Brassica carinata HOM05D005921 ORTHO05D007374 6.7e-178 627.9 456 65.8
Manes.02G183400 Manihot esculenta HOM05D005921 ORTHO05D007374 1.1e-177 627.1 474 65.0
Aa31LG4G8950 Aethionema arabicum HOM05D005921 ORTHO05D007374 1.5e-177 626.7 442 66.3
COL.COLO4_13778 Corchorus olitorius HOM05D005921 ORTHO05D007374 2.5e-177 625.9 523 59.8
VMungo0720G0456 Vigna mungo HOM05D005921 ORTHO05D007374 4.3e-177 625.2 495 60.8
A02p17260 Brassica napus HOM05D005921 ORTHO05D007374 1.3e-176 623.6 456 65.1
Thhalv10018610m.g Eutrema salsugineum HOM05D005921 ORTHO05D007374 1.3e-176 623.6 415 69.9
Carub.0002s1845 Capsella rubella HOM05D005921 ORTHO05D007374 6.2e-176 621.3 459 65.1
CSS0006668 Camellia sinensis var. sinensis HOM05D005921 ORTHO05D007374 3.1e-175 619.0 457 65.6
BcaB05g24658 Brassica carinata HOM05D005921 ORTHO05D007374 6.9e-175 617.8 479 63.3
C02p28900 Brassica napus HOM05D005921 ORTHO05D007374 3.4e-174 615.5 472 63.3
FAN27G2380 Fragaria x ananassa HOM05D005921 ORTHO05D007374 7.6e-174 614.4 512 61.1
Migut.N02950 Erythranthe guttata HOM05D005921 ORTHO05D007374 1.0e-173 614.0 496 59.5
Sopen04g027990 Solanum pennellii HOM05D005921 ORTHO05D007374 2.9e-173 612.5 480 62.3
Solyc04g072010.3 Solanum lycopersicum HOM05D005921 ORTHO05D007374 4.9e-173 611.7 482 61.8
PGR044G0568 Punica granatum HOM05D005921 ORTHO05D007374 1.1e-172 610.5 449 63.3
CAN.G1252.3 Capsicum annuum HOM05D005921 ORTHO05D007374 1.4e-172 610.1 480 62.3
Eucgr.L02800 Eucalyptus grandis HOM05D005921 ORTHO05D007374 4.2e-172 608.6 539 57.7
Ciclev10003457m.g Citrus clementina HOM05D005921 ORTHO05D007374 5.5e-172 608.2 430 67.7
TAR381G0629 Trochodendron aralioides HOM05D005921 ORTHO05D007374 2.7e-171 605.9 493 61.3
Sc02g0003820 Simmondsia chinensis HOM05D005921 ORTHO05D007374 4.6e-171 605.1 389 72.5
TWI32G1095 Tripterygium wilfordii HOM05D005921 ORTHO05D007374 7.9e-171 604.4 493 60.9
Cc10_g15280 Coffea canephora HOM05D005921 ORTHO05D007374 1.0e-170 604.0 496 60.3
HanXRQChr02g0042431 Helianthus annuus HOM05D005921 ORTHO05D007374 1.8e-170 603.2 463 62.9
MBI01_g34168_MAGBIO Magnolia biondii HOM05D005921 ORTHO05D007374 3.3e-169 599.0 482 61.6
Gohir.D05G273101 Gossypium hirsutum HOM05D005921 ORTHO05D007374 7.4e-169 597.8 488 60.9
Aqoxy6G00427 Aquilegia oxysepala HOM05D005921 ORTHO05D007374 9.6e-169 597.4 479 62.0
EL10Ac1g01606 Beta vulgaris HOM05D005921 ORTHO05D007374 9.6e-169 597.4 446 64.1
Phvul.007G083600 Phaseolus vulgaris HOM05D005921 ORTHO05D007374 3.1e-167 592.4 402 66.7
Peaxi162Scf00360g00056 Petunia axillaris HOM05D005921 ORTHO05D007374 1.2e-166 590.5 443 65.0
CDE04G2034 Ceratophyllum demersum HOM05D005921 ORTHO05D007374 2.0e-166 589.7 485 58.4
CARHR291100 Cardamine hirsuta HOM05D005921 ORTHO05D007374 3.8e-165 585.5 396 68.7
Lsat_1_v5_gn_1_5181 Lactuca sativa HOM05D005921 ORTHO05D007374 3.8e-165 585.5 413 66.6
MSTRG.24492 Avicennia marina HOM05D005921 ORTHO05D007374 1.1e-164 583.9 499 57.9
FAN15G3525 Fragaria x ananassa HOM05D005921 ORTHO05D007374 1.4e-164 583.6 515 58.6
PSO675G2388 Papaver somniferum HOM05D005921 ORTHO05D007374 1.4e-164 583.6 486 58.4
Hund26678 Selenicereus undatus HOM05D005921 ORTHO05D007374 3.0e-162 575.9 528 56.1
MSTRG.22109 Avicennia marina HOM05D005921 ORTHO05D007374 2.5e-161 572.8 480 59.0
SalBow6G1744 Salvia bowleyana HOM05D005921 ORTHO05D007374 1.3e-160 570.5 509 55.6
ECA247G3881 Erigeron canadensis HOM05D005921 ORTHO05D007374 8.2e-160 567.8 373 70.5
Lj7A383T42 Lonicera japonica HOM05D005921 ORTHO05D007374 3.1e-159 565.8 442 64.7
unitig_578.g16229 Utricularia gibba HOM05D005921 ORTHO05D007374 1.0e-157 560.8 414 63.8
Ah.05g168190 Amaranthus hybridus HOM05D005921 ORTHO05D007374 6.5e-157 558.1 403 65.3
Lj4A704G63 Lonicera japonica HOM05D005921 ORTHO05D007374 4.6e-155 552.0 401 67.1
Zm00001eb377250 Zea mays HOM05D005921 ORTHO05D007374 1.4e-154 550.4 462 57.6
FAN20G2564 Fragaria x ananassa HOM05D005921 ORTHO05D007374 4.1e-151 538.9 515 56.3
ATR1120G060 Amborella trichopoda HOM05D004165 ORTHO05D005063 1.0e-149 534.3 396 63.6
AUR62034891 Chenopodium quinoa HOM05D005921 ORTHO05D007374 5.0e-149 531.9 437 59.7
Nn5g28835 Nelumbo nucifera HOM05D005921 ORTHO05D007374 8.5e-149 531.2 480 56.2
Sabra05G0149900 Salix brachista HOM05D005921 ORTHO05D007374 2.4e-143 513.1 476 56.5
Hma1.2p1_0358F.1_g134830 Hydrangea macrophylla HOM05D005921 ORTHO05D007374 2.9e-141 506.1 343 70.6
DCAR_001188 Daucus carota HOM05D005921 ORTHO05D007374 3.2e-140 502.7 300 75.0
SGA_v2.0_scaffold54G19682 Striga asiatica HOM05D005921 ORTHO05D007374 2.8e-136 489.6 476 52.9
AUR62026635 Chenopodium quinoa HOM05D005921 ORTHO05D007374 1.8e-135 486.9 392 59.7
Nitab4.5_0013157g0020 Nicotiana tabacum HOM05D005921 ORTHO05D007374 7.7e-134 481.5 359 65.5
SMO116G0063 Selaginella moellendorffii HOM05D005921 ORTHO05D007374 6.5e-133 478.4 429 54.8
Nitab4.5_0000099g0240 Nicotiana tabacum HOM05D005921 ORTHO05D007374 3.4e-129 466.1 499 51.9
Cpa.g.sc26.80 Carica papaya HOM05D005921 ORTHO05D007374 2.2e-128 463.4 327 67.0
AagrBONN_evm.TU.Sc2ySwM_344.3190 Anthoceros agrestis HOM05D005921 ORTHO05D007374 1.1e-127 461.1 357 59.1
Mapoly0096s0032 Marchantia polymorpha HOM05D005921 ORTHO05D007374 1.6e-126 457.2 369 57.5
HPP92_000681 Vanilla planifolia HOM05D005921 ORTHO05D007374 5.2e-122 442.2 334 63.8
Pp3c16_14030 Physcomitrium patens HOM05D005921 ORTHO05D007374 2.4e-119 433.3 331 58.9
Ciclev10003529m.g Citrus clementina HOM05D005921 ORTHO05D007374 5.9e-118 428.7 408 56.4
Haze_17806 Corylus avellana HOM05D005921 ORTHO05D007374 9.2e-111 404.8 285 69.1
Pp3c6_12100 Physcomitrium patens HOM05D005921 ORTHO05D007374 3.5e-94 349.7 365 48.8
QL02p037460 Quercus lobata HOM05D005921 ORTHO05D007374 8.6e-93 345.1 246 69.9
CBR_g30849 Chara braunii HOM05D005921 ORTHO05D007374 1.1e-92 344.7 345 48.4
QL02p037958 Quercus lobata HOM05D005921 ORTHO05D007374 1.1e-92 344.7 246 69.9
HPP92_000638 Vanilla planifolia HOM05D005921 ORTHO05D007374 2.1e-91 340.5 316 54.1
QL02p037446 Quercus lobata HOM05D005921 ORTHO05D007374 3.1e-90 336.7 246 64.2
QL02p037946 Quercus lobata HOM05D005921 ORTHO05D007374 3.1e-90 336.7 246 64.2
BolC2t08937H Brassica oleracea HOM05D005921 ORTHO05D007374 1.2e-86 324.7 219 69.4
BraA02t06774Z Brassica rapa HOM05D005921 ORTHO05D007374 1.2e-86 324.7 219 69.4
SHI09099 Sapria himalayana HOM05D005921 ORTHO05D007374 1.0e-85 321.6 298 54.7
Oeu017621.1 Olea europaea HOM05D005921 ORTHO05D007374 1.2e-83 314.7 178 77.5
MCO15G195 Micromonas commoda HOM05D005921 ORTHO05D007374 1.1e-68 265.0 373 38.3
BolC2t08936H Brassica oleracea HOM05D005921 ORTHO05D007374 9.0e-66 255.4 228 57.0
BraA02t06773Z Brassica rapa HOM05D005921 ORTHO05D007374 9.9e-65 251.9 221 57.0
PRCOL_00005633 Prasinoderma coloniale HOM05D005921 ORTHO05D007374 1.4e-63 248.1 353 37.1
Os06g0144600 Oryza sativa ssp. japonica HOM05D005921 ORTHO05D007374 2.9e-56 223.8 189 61.9
Zm00001eb035610 Zea mays HOM05D005921 ORTHO05D007374 1.2e-54 218.4 154 66.9
SEGI_33860 Sequoiadendron giganteum HOM05D005921 ORTHO05D007374 3.9e-53 213.4 163 62.6
Zm00001eb246880 Zea mays HOM05D005921 ORTHO05D007374 4.1e-42 176.8 108 73.1
SEGI_16149 Sequoiadendron giganteum HOM05D005921 ORTHO05D007374 4.2e-39 166.8 98 71.4
Cre07.g335900 Chlamydomonas reinhardtii HOM05D005921 ORTHO05D007374 6.7e-37 159.5 336 33.6
Cre06.g309450 Chlamydomonas reinhardtii HOM05D005921 ORTHO05D007374 2.2e-32 144.4 360 31.4
SHI09097 Sapria himalayana HOM05D005921 ORTHO05D007374 1.9e-31 141.4 88 73.9
Duzib093G1718 Durio zibethinus HOM05D005921 ORTHO05D007374 2.8e-27 127.5 73 76.7
MD10G1034600 Malus domestica HOM05D005921 ORTHO05D007374 2.6e-25 120.9 141 45.4
Pp3c27_7150 Physcomitrium patens HOM05D005921 ORTHO05D007374 2.0e-20 104.8 377 26.0
Zm00001eb035620 Zea mays HOM05D005921 ORTHO05D007374 5.3e-18 96.7 55 72.7
Prupe.8G040900 Prunus persica HOM05D005921 ORTHO05D007374 2.8e-11 74.3 97 47.4
Sabra02G0051300 Salix brachista HOM05D005921 ORTHO05D007374 5.4e-10 70.1 98 42.9


User provided reference genes

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