Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG08G007290 Citrullus lanatus HOM05D004300 ORTHO05D005171 3.5e-183 644.8 325 100.0
MELO3C019973.2 Cucumis melo HOM05D004300 ORTHO05D005171 3.0e-166 588.6 327 90.8
CsaV3_6G004960 Cucumis sativus L. HOM05D004300 ORTHO05D005171 5.1e-166 587.8 327 91.1
ClCG10G005160 Citrullus lanatus HOM05D004300 ORTHO05D005171 2.4e-155 552.4 325 88.3
Sed0000768 Sechium edule HOM05D004300 ORTHO05D005171 7.2e-152 540.8 325 85.8
Sed0018013 Sechium edule HOM05D004300 ORTHO05D005171 2.7e-135 485.7 326 77.9
Duzib168G1574 Durio zibethinus HOM05D004300 ORTHO05D005171 1.2e-90 337.4 321 57.9
GSVIVG01025511001 Vitis vinifera HOM05D004300 ORTHO05D005171 6.6e-89 331.6 318 58.2
Potri.001G000900 Populus trichocarpa HOM05D004300 ORTHO05D005171 1.1e-88 330.9 321 57.3
TWI34G2030 Tripterygium wilfordii HOM05D004300 ORTHO05D005171 3.3e-88 329.3 321 53.6
Thecc.09G206000 Theobroma cacao HOM05D004300 ORTHO05D005171 2.1e-87 326.6 327 56.9
Gorai.004G019900 Gossypium raimondii HOM05D004300 ORTHO05D005171 2.8e-87 326.2 319 54.5
Gohir.D08G020600 Gossypium hirsutum HOM05D004300 ORTHO05D005171 4.7e-87 325.5 319 54.2
Manes.03G085800 Manihot esculenta HOM05D004300 ORTHO05D005171 4.7e-87 325.5 317 53.6
QL01p007808 Quercus lobata HOM05D004300 ORTHO05D005171 2.3e-86 323.2 299 57.2
MD11G1000600 Malus domestica HOM05D004300 ORTHO05D005171 4.0e-86 322.4 321 56.1
Gohir.A08G014000 Gossypium hirsutum HOM05D004300 ORTHO05D005171 6.8e-86 321.6 319 53.9
TWI32G0643 Tripterygium wilfordii HOM05D004300 ORTHO05D005171 9.8e-85 317.8 322 52.5
TAR369G0454 Trochodendron aralioides HOM05D004300 ORTHO05D005171 5.4e-83 312.0 322 54.0
Actinidia16226 Actinidia chinensis HOM05D004300 ORTHO05D005171 1.6e-82 310.5 315 53.3
FAN25G0045 Fragaria x ananassa HOM05D004300 ORTHO05D005171 1.6e-82 310.5 321 54.2
FAN21G2148 Fragaria x ananassa HOM05D004300 ORTHO05D005171 6.0e-82 308.5 329 53.8
Rhsim09G0130300 Rhododendron simsii HOM05D004300 ORTHO05D005171 5.1e-81 305.4 319 53.6
Manes.15G111100 Manihot esculenta HOM05D004300 ORTHO05D005171 6.6e-81 305.1 331 50.5
TWI36G1534 Tripterygium wilfordii HOM05D004300 ORTHO05D005171 6.6e-81 305.1 322 51.2
Dinv31991 Davidia involucrata HOM05D004300 ORTHO05D005171 1.9e-80 303.5 307 55.0
Glyma.12G020500 Glycine max HOM05D004300 ORTHO05D005171 1.2e-79 300.8 320 50.9
Phvul.011G023200 Phaseolus vulgaris HOM05D004300 ORTHO05D005171 1.6e-79 300.4 322 50.6
Ciclev10015980m.g Citrus clementina HOM05D004300 ORTHO05D005171 2.1e-79 300.1 322 50.0
Ca_30870_v3 Cicer arietinum L. HOM05D004300 ORTHO05D005171 4.7e-79 298.9 324 52.5
CiPaw.13G179700 Carya illinoinensis HOM05D004300 ORTHO05D005171 8.1e-79 298.1 306 53.6
Haze_22917 Corylus avellana HOM05D004300 ORTHO05D005171 8.1e-79 298.1 301 54.8
MBI19_g24076_MAGBIO Magnolia biondii HOM05D004300 ORTHO05D005171 8.1e-79 298.1 323 52.9
Cpa.g.sc119.11 Carica papaya HOM05D004300 ORTHO05D005171 1.4e-78 297.4 318 53.5
Sabra01G0000800 Salix brachista HOM05D004300 ORTHO05D005171 8.9e-78 294.7 367 50.1
TAR623G1572 Trochodendron aralioides HOM05D004300 ORTHO05D005171 2.6e-77 293.1 320 53.1
Nitab4.5_0000075g0150 Nicotiana tabacum HOM05D004300 ORTHO05D005171 5.8e-77 292.0 330 50.3
FvH4_3g45990 Fragaria vesca HOM05D004300 ORTHO05D005171 9.9e-77 291.2 321 51.4
VMungo1127G0835 Vigna mungo HOM05D004300 ORTHO05D005171 9.9e-77 291.2 322 50.0
PSO339G2659 Papaver somniferum HOM05D004300 ORTHO05D005171 2.2e-76 290.0 317 52.1
Medtr1g055160 Medicago truncatula HOM05D004300 ORTHO05D005171 2.9e-76 289.7 318 51.6
FAN11G3171 Fragaria x ananassa HOM05D004300 ORTHO05D005171 3.8e-76 289.3 318 51.3
HanXRQChr03g0088211 Helianthus annuus HOM05D004300 ORTHO05D005171 6.4e-76 288.5 319 50.5
Cfa009526 Carpinus fangiana HOM05D004300 ORTHO05D005171 1.1e-75 287.7 295 53.9
Peaxi162Scf00186g01713 Petunia axillaris HOM05D004300 ORTHO05D005171 1.1e-75 287.7 330 50.9
Psat7g172560 Pisum sativum HOM05D004300 ORTHO05D005171 2.4e-75 286.6 320 51.2
AT3G13410 Arabidopsis thaliana HOM05D004300 ORTHO05D005171 4.1e-75 285.8 328 47.6
Cc03_g11060 Coffea canephora HOM05D004300 ORTHO05D005171 4.1e-75 285.8 323 50.5
Thhalv10021153m.g Eutrema salsugineum HOM05D004300 ORTHO05D005171 5.4e-75 285.4 329 47.4
Sabra02G0167600 Salix brachista HOM05D004300 ORTHO05D005171 7.1e-75 285.0 340 50.3
Sopen01g018940 Solanum pennellii HOM05D004300 ORTHO05D005171 9.2e-75 284.6 328 49.1
Solyc01g049890.3 Solanum lycopersicum HOM05D004300 ORTHO05D005171 1.2e-74 284.3 328 48.8
Ah.10g037910 Amaranthus hybridus HOM05D004300 ORTHO05D005171 3.5e-74 282.7 329 47.1
CARHR088020 Cardamine hirsuta HOM05D004300 ORTHO05D005171 3.5e-74 282.7 318 47.8
FAN16G3749 Fragaria x ananassa HOM05D004300 ORTHO05D005171 6.0e-74 282.0 329 49.8
AL1G63580 Arabidopsis lyrata HOM05D004300 ORTHO05D005171 1.0e-73 281.2 320 47.2
BcaC01g03994 Brassica carinata HOM05D004300 ORTHO05D005171 1.3e-73 280.8 317 48.6
BcaC05g29181 Brassica carinata HOM05D004300 ORTHO05D005171 1.3e-73 280.8 316 47.5
C05p54490 Brassica napus HOM05D004300 ORTHO05D005171 1.3e-73 280.8 316 47.5
BolC3t16904H Brassica oleracea HOM05D004300 ORTHO05D005171 1.3e-73 280.8 317 48.6
BolC5t34116H Brassica oleracea HOM05D004300 ORTHO05D005171 1.3e-73 280.8 316 47.5
Lj1A554T14 Lonicera japonica HOM05D004300 ORTHO05D005171 3.0e-73 279.6 282 52.5
Medtr4g076880 Medicago truncatula HOM05D004300 ORTHO05D005171 3.0e-73 279.6 318 51.6
MSTRG.20930 Avicennia marina HOM05D004300 ORTHO05D005171 3.9e-73 279.3 322 49.7
A03p38190 Brassica napus HOM05D004300 ORTHO05D005171 6.6e-73 278.5 319 48.6
A05p36120 Brassica napus HOM05D004300 ORTHO05D005171 6.6e-73 278.5 328 47.0
C03p46350 Brassica napus HOM05D004300 ORTHO05D005171 6.6e-73 278.5 317 48.3
BraA03t12972Z Brassica rapa HOM05D004300 ORTHO05D005171 6.6e-73 278.5 319 48.6
BraA05t22418Z Brassica rapa HOM05D004300 ORTHO05D005171 6.6e-73 278.5 328 47.0
BcaC09g48307 Brassica carinata HOM05D004300 ORTHO05D005171 8.6e-73 278.1 317 47.3
C01p51680 Brassica napus HOM05D004300 ORTHO05D005171 8.6e-73 278.1 317 47.3
BolC1t05112H Brassica oleracea HOM05D004300 ORTHO05D005171 8.6e-73 278.1 317 47.3
Sc14g0004840 Simmondsia chinensis HOM05D004300 ORTHO05D005171 8.6e-73 278.1 323 49.8
Aa31LG8G620 Aethionema arabicum HOM05D004300 ORTHO05D005171 1.1e-72 277.7 328 45.7
AL3G25280 Arabidopsis lyrata HOM05D004300 ORTHO05D005171 1.1e-72 277.7 328 46.3
A01p40190 Brassica napus HOM05D004300 ORTHO05D005171 1.1e-72 277.7 317 47.3
PSO384G2337 Papaver somniferum HOM05D004300 ORTHO05D005171 1.1e-72 277.7 319 50.8
BraA01t04057Z Brassica rapa HOM05D004300 ORTHO05D005171 1.5e-72 277.3 317 47.6
Sp3g11600 Schrenkiella parvula HOM05D004300 ORTHO05D005171 1.5e-72 277.3 316 46.2
ECA234G4359 Erigeron canadensis HOM05D004300 ORTHO05D005171 3.3e-72 276.2 318 48.7
Aa31LG10G690 Aethionema arabicum HOM05D004300 ORTHO05D005171 5.6e-72 275.4 329 46.5
AUR62023250 Chenopodium quinoa HOM05D004300 ORTHO05D005171 9.6e-72 274.6 330 47.6
BcaB04g18758 Brassica carinata HOM05D004300 ORTHO05D005171 1.2e-71 274.2 329 46.2
CSS0042366 Camellia sinensis var. sinensis HOM05D004300 ORTHO05D005171 2.1e-71 273.5 273 53.5
Carub.0003s1278 Capsella rubella HOM05D004300 ORTHO05D005171 2.8e-71 273.1 329 46.2
CARHR045240 Cardamine hirsuta HOM05D004300 ORTHO05D005171 2.8e-71 273.1 328 45.1
DCAR_019963 Daucus carota HOM05D004300 ORTHO05D005171 3.6e-71 272.7 323 49.2
CDE11G0372 Ceratophyllum demersum HOM05D004300 ORTHO05D005171 8.1e-71 271.6 322 48.4
Migut.D02580 Erythranthe guttata HOM05D004300 ORTHO05D005171 8.1e-71 271.6 319 49.5
Glyma.11G094000 Glycine max HOM05D004300 ORTHO05D005171 8.1e-71 271.6 322 46.3
RcHm_v2.0_Chr5g0084101 Rosa chinensis HOM05D004300 ORTHO05D005171 1.8e-70 270.4 329 46.2
arahy.Tifrunner.gnm1.ann1.S4YUBI Arachis hypogaea HOM05D004300 ORTHO05D005171 2.4e-70 270.0 329 47.1
Sp1g41170 Schrenkiella parvula HOM05D004300 ORTHO05D005171 2.4e-70 270.0 326 44.5
Nn7g35788 Nelumbo nucifera HOM05D004300 ORTHO05D005171 5.2e-70 268.9 321 47.7
CANSAT54G1622 Cannabis sativa HOM05D004300 ORTHO05D005171 6.9e-70 268.5 329 46.2
CDE02G0988 Ceratophyllum demersum HOM05D004300 ORTHO05D005171 1.5e-69 267.3 322 47.8
Eucgr.J01724 Eucalyptus grandis HOM05D004300 ORTHO05D005171 1.5e-69 267.3 327 47.7
EL10Ac2g04496 Beta vulgaris HOM05D004300 ORTHO05D005171 2.6e-69 266.5 329 46.8
Lj3g0008656 Lotus japonicus HOM05D004300 ORTHO05D005171 3.4e-69 266.2 326 46.3
Prupe.6G000900 Prunus persica HOM05D004300 ORTHO05D005171 3.4e-69 266.2 329 47.4
ATR0068G043 Amborella trichopoda HOM05D004300 ORTHO05D005171 4.4e-69 265.8 320 46.9
BcaB04g21013 Brassica carinata HOM05D004300 ORTHO05D005171 7.6e-69 265.0 316 46.8
THA.LOC104822689 Tarenaya hassleriana HOM05D004300 ORTHO05D005171 7.6e-69 265.0 300 47.7
COL.COLO4_35065 Corchorus olitorius HOM05D004300 ORTHO05D005171 2.2e-68 263.5 291 50.9
SalBow2G2450 Salvia bowleyana HOM05D004300 ORTHO05D005171 4.9e-68 262.3 328 47.0
CAN.G40.2 Capsicum annuum HOM05D004300 ORTHO05D005171 8.4e-68 261.5 330 47.0
Ah.16g101370 Amaranthus hybridus HOM05D003924 ORTHO05D005216 1.1e-67 261.2 329 44.1
SGA_v2.0_scaffold6G03345 Striga asiatica HOM05D004300 ORTHO05D005171 1.1e-67 261.2 322 48.4
Lsat_1_v5_gn_4_42220 Lactuca sativa HOM05D004300 ORTHO05D005171 2.4e-67 260.0 317 46.4
Sabra03G0048200 Salix brachista HOM05D004300 ORTHO05D005171 7.1e-67 258.5 394 44.2
THA.LOC104816065 Tarenaya hassleriana HOM05D004300 ORTHO05D005171 1.6e-66 257.3 323 44.3
Atru.chr3.2054 Acer truncatum HOM05D004300 ORTHO05D005171 2.1e-66 256.9 287 49.1
MSTRG.18890 Avicennia marina HOM05D004300 ORTHO05D005171 2.7e-66 256.5 324 45.1
CANSAT35G0440 Cannabis sativa HOM05D004300 ORTHO05D005171 4.6e-66 255.8 324 44.1
Carub.0001s4406 Capsella rubella HOM05D004300 ORTHO05D005171 1.3e-65 254.2 320 44.4
PGR119G1781 Punica granatum HOM05D004300 ORTHO05D005171 5.6e-64 248.8 323 44.6
PGSC0003DMG400021083 Solanum tuberosum HOM05D004300 ORTHO05D005171 1.3e-63 247.7 258 51.6
PGSC0003DMG400031504 Solanum tuberosum HOM05D004300 ORTHO05D005171 2.8e-63 246.5 258 51.6
SGA_v2.0_scaffold3G01707 Striga asiatica HOM05D004300 ORTHO05D005171 1.1e-62 244.6 321 48.0
Nn2g15910 Nelumbo nucifera HOM05D004300 ORTHO05D005171 1.8e-62 243.8 290 49.7
arahy.Tifrunner.gnm1.ann1.C8XIPM Arachis hypogaea HOM05D004300 ORTHO05D005171 4.0e-62 242.7 329 43.2
Hund16197 Selenicereus undatus HOM05D004300 ORTHO05D005171 6.9e-62 241.9 259 49.4
Zm00001eb195780 Zea mays HOM05D004300 ORTHO05D005171 9.0e-62 241.5 318 43.1
vmacro04045 Vaccinium macrocarpon HOM05D004300 ORTHO05D005171 1.5e-61 240.7 416 38.9
HPP92_021175 Vanilla planifolia HOM05D004300 ORTHO05D005171 3.4e-61 239.6 321 44.5
Potri.003G223601 Populus trichocarpa HOM05D004300 ORTHO05D005171 7.6e-61 238.4 261 52.9
Ca_18976_v3 Cicer arietinum L. HOM05D004300 ORTHO05D005171 2.9e-60 236.5 293 47.8
Lalb_Chr01g0001071 Lupinus albus HOM05D004300 ORTHO05D005171 4.9e-60 235.7 322 43.5
Lalb_Chr19g0139761 Lupinus albus HOM05D004300 ORTHO05D005171 1.4e-59 234.2 315 43.2
Os12g0123900 Oryza sativa ssp. japonica HOM05D004300 ORTHO05D005171 4.6e-58 229.2 304 42.4
Os11g0127700 Oryza sativa ssp. japonica HOM05D004300 ORTHO05D005171 1.0e-57 228.0 304 41.8
Zm00001eb093640 Zea mays HOM05D004300 ORTHO05D005171 5.1e-57 225.7 323 41.5
Duzib150G1501 Durio zibethinus HOM05D004300 ORTHO05D005171 6.7e-57 225.3 318 45.0
unitig_22.g5956 Utricularia gibba HOM05D004300 ORTHO05D005171 2.4e-54 216.9 329 43.8
TPR.G3681 Trifolium pratense HOM05D004300 ORTHO05D005171 4.2e-51 206.1 347 40.9
MD03G1001400 Malus domestica HOM05D004300 ORTHO05D005171 3.8e-44 183.0 223 46.6
Thhalv10011977m.g Eutrema salsugineum HOM05D004300 ORTHO05D005171 2.5e-43 180.3 215 47.0
SEGI_28087 Sequoiadendron giganteum HOM05D004300 ORTHO05D005171 1.2e-37 161.4 249 39.0
Nitab4.5_0000890g0150 Nicotiana tabacum HOM05D004300 ORTHO05D005171 1.1e-32 144.8 172 47.1
RcHm_v2.0_Chr4g0398051 Rosa chinensis HOM05D004300 ORTHO05D005171 3.7e-31 139.8 155 47.1
RcHm_v2.0_Chr7g0192441 Rosa chinensis HOM05D004300 ORTHO05D005171 9.1e-30 135.2 168 44.0
Mapoly0001s0434 Marchantia polymorpha HOM05D004300 ORTHO05D005171 2.1e-26 124.0 327 32.1
AUR62023204 Chenopodium quinoa HOM05D004300 ORTHO05D005171 4.6e-26 122.9 194 40.2
Pp3c1_26860 Physcomitrium patens HOM05D004300 ORTHO05D005171 3.9e-25 119.8 323 27.9
SMO134G0100 Selaginella moellendorffii HOM05D004300 ORTHO05D005171 1.8e-22 110.9 320 32.2
Pp3c14_9560 Physcomitrium patens HOM05D004300 ORTHO05D005171 7.7e-21 105.5 328 25.0
Potri.008G223987 Populus trichocarpa HOM05D004300 ORTHO05D005171 5.5e-19 99.4 111 51.4
AL1G23250 Arabidopsis lyrata HOM05D004300 ORTHO05D005171 9.4e-19 98.6 122 41.8
AL5G32130 Arabidopsis lyrata HOM05D004300 ORTHO05D005171 2.7e-18 97.1 122 41.0
FAN02G4318 Fragaria x ananassa HOM05D004300 ORTHO05D005171 9.7e-16 88.6 90 50.0
FAN17G1476 Fragaria x ananassa HOM05D004300 ORTHO05D005171 9.7e-16 88.6 90 50.0
Potri.012G124888 Populus trichocarpa HOM05D004300 ORTHO05D005171 1.1e-14 85.1 91 51.6
FAN20G0894 Fragaria x ananassa HOM05D004300 ORTHO05D005171 4.1e-14 83.2 98 46.9
Zm00001eb387380 Zea mays HOM05D004300 ORTHO05D005171 2.6e-13 80.5 89 44.9
AT1G55546 Arabidopsis thaliana HOM05D004300 ORTHO05D005171 5.9e-13 79.3 119 39.5
Zm00001eb043250 Zea mays HOM05D004300 ORTHO05D005171 5.9e-13 79.3 85 47.1
Zm00001eb363780 Zea mays HOM05D004300 ORTHO05D005171 1.0e-12 78.6 75 49.3
Actinidia00920 Actinidia chinensis HOM05D004300 ORTHO05D038087 8.5e-12 75.5 124 37.9
Zm00001eb080660 Zea mays HOM05D004300 ORTHO05D005171 4.2e-11 73.2 75 46.7
Zm00001eb132370 Zea mays HOM05D004300 ORTHO05D005171 9.7e-08 62.0 151 27.2


User provided reference genes

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