Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG08G007150 Citrullus lanatus HOM05D005529 ORTHO05D006800 4.0e-139 498.0 242 100.0
CsaV3_6G004830 Cucumis sativus L. HOM05D005529 ORTHO05D006800 1.6e-132 476.1 257 91.1
Sed0025527 Sechium edule HOM05D005529 ORTHO05D006800 7.5e-130 467.2 257 88.3
QL02p036323 Quercus lobata HOM05D005529 ORTHO05D006800 5.6e-117 424.5 255 81.6
QL02p036742 Quercus lobata HOM05D005529 ORTHO05D006800 5.6e-117 424.5 255 81.6
Cc10_g06360 Coffea canephora HOM05D005529 ORTHO05D006800 9.5e-117 423.7 257 80.5
Thecc.08G196300 Theobroma cacao HOM05D005529 ORTHO05D006800 9.5e-117 423.7 257 79.8
CANSAT25G1808 Cannabis sativa HOM05D005529 ORTHO05D006800 1.6e-116 422.9 255 82.7
Haze_17835 Corylus avellana HOM05D005529 ORTHO05D006800 2.8e-116 422.2 257 81.3
Haze_17841 Corylus avellana HOM05D005529 ORTHO05D006800 2.8e-116 422.2 257 81.3
Eucgr.F02670 Eucalyptus grandis HOM05D005529 ORTHO05D006800 2.8e-116 422.2 257 79.0
PGR042G1245 Punica granatum HOM05D005529 ORTHO05D006800 8.0e-116 420.6 257 79.8
CiPaw.15G011100 Carya illinoinensis HOM05D005529 ORTHO05D006800 1.0e-115 420.2 255 79.6
CiPaw.16G006900 Carya illinoinensis HOM05D005529 ORTHO05D006800 1.4e-115 419.9 255 80.4
Aqoxy6G00458 Aquilegia oxysepala HOM05D005529 ORTHO05D006800 1.8e-115 419.5 257 79.4
MD05G1037000 Malus domestica HOM05D005529 ORTHO05D006800 1.8e-115 419.5 257 80.5
GSVIVG01013675001 Vitis vinifera HOM05D005529 ORTHO05D006800 1.8e-115 419.5 257 80.2
Actinidia15622 Actinidia chinensis HOM05D005529 ORTHO05D006800 3.1e-115 418.7 257 80.2
CSS0023417 Camellia sinensis var. sinensis HOM05D005529 ORTHO05D006800 4.0e-115 418.3 257 78.6
Lj4A706T78 Lonicera japonica HOM05D005529 ORTHO05D006800 4.0e-115 418.3 255 79.2
Prupe.8G045100 Prunus persica HOM05D005529 ORTHO05D006800 4.0e-115 418.3 257 80.5
Migut.C00162 Erythranthe guttata HOM05D005529 ORTHO05D006800 5.2e-115 417.9 255 79.6
Migut.O00737 Erythranthe guttata HOM05D005529 ORTHO05D006800 5.2e-115 417.9 255 79.6
Cpa.g.sc26.128 Carica papaya HOM05D005529 ORTHO05D006800 2.6e-114 415.6 257 79.8
Solyc12g056770.3 Solanum lycopersicum HOM05D005529 ORTHO05D006800 3.4e-114 415.2 255 78.0
Sopen12g029450 Solanum pennellii HOM05D005529 ORTHO05D006800 3.4e-114 415.2 255 78.0
Glyma.10G219900 Glycine max HOM05D005529 ORTHO05D006800 5.8e-114 414.5 255 78.0
Lj5g0011658 Lotus japonicus HOM05D005529 ORTHO05D006800 1.7e-113 412.9 257 77.0
Peaxi162Scf00160g01637 Petunia axillaris HOM05D005529 ORTHO05D006800 1.7e-113 412.9 257 77.4
Atru.chr13.1964 Acer truncatum HOM05D005529 ORTHO05D006800 2.2e-113 412.5 257 79.8
CAN.G26.7 Capsicum annuum HOM05D005529 ORTHO05D006800 2.2e-113 412.5 257 77.4
RcHm_v2.0_Chr6g0273541 Rosa chinensis HOM05D005529 ORTHO05D006800 2.9e-113 412.1 257 78.6
Medtr1g097380 Medicago truncatula HOM05D005529 ORTHO05D006800 3.7e-113 411.8 257 77.4
Psat6g189800 Pisum sativum HOM05D005529 ORTHO05D006800 6.4e-113 411.0 257 77.4
Sc26g0003120 Simmondsia chinensis HOM05D005529 ORTHO05D006800 6.4e-113 411.0 257 78.2
Manes.02G186100 Manihot esculenta HOM05D005529 ORTHO05D006800 1.1e-112 410.2 258 79.5
Glyma.20G171800 Glycine max HOM05D005529 ORTHO05D006800 3.2e-112 408.7 255 77.3
arahy.Tifrunner.gnm1.ann1.MD2PB3 Arachis hypogaea HOM05D005529 ORTHO05D006800 4.1e-112 408.3 257 77.0
arahy.Tifrunner.gnm1.ann1.PZ5J07 Arachis hypogaea HOM05D005529 ORTHO05D006800 4.1e-112 408.3 257 77.0
Phvul.007G085400 Phaseolus vulgaris HOM05D005529 ORTHO05D006800 5.4e-112 407.9 257 76.7
MSTRG.965 Avicennia marina HOM05D005529 ORTHO05D006800 1.2e-111 406.8 257 76.7
COL.COLO4_05242 Corchorus olitorius HOM05D005529 ORTHO05D006800 1.6e-111 406.4 257 77.4
FvH4_2g12750 Fragaria vesca HOM05D005529 ORTHO05D006800 1.6e-111 406.4 257 78.2
FAN15G0152 Fragaria x ananassa HOM05D005529 ORTHO05D006800 1.6e-111 406.4 257 78.2
FAN27G2439 Fragaria x ananassa HOM05D005529 ORTHO05D006800 1.6e-111 406.4 257 78.2
TPR.G23153 Trifolium pratense HOM05D005529 ORTHO05D006800 2.0e-111 406.0 257 77.0
Ciclev10002214m.g Citrus clementina HOM05D005529 ORTHO05D006800 3.5e-111 405.2 255 78.8
CSS0035962 Camellia sinensis var. sinensis HOM05D005529 ORTHO05D006800 4.6e-111 404.8 257 77.8
Sabra05G0151800 Salix brachista HOM05D005529 ORTHO05D006800 4.6e-111 404.8 254 78.3
Potri.005G199600 Populus trichocarpa HOM05D005529 ORTHO05D006800 1.0e-110 403.7 254 78.3
CSS0031927 Camellia sinensis var. sinensis HOM05D005529 ORTHO05D006800 1.3e-110 403.3 257 77.4
FAN24G1078 Fragaria x ananassa HOM05D005529 ORTHO05D006800 1.7e-110 402.9 257 77.8
Lalb_Chr06g0161811 Lupinus albus HOM05D005529 ORTHO05D006800 1.7e-110 402.9 257 75.9
Lalb_Chr21g0305631 Lupinus albus HOM05D005529 ORTHO05D006800 6.6e-110 401.0 257 74.3
Oeu027223.1 Olea europaea HOM05D005529 ORTHO05D006800 6.6e-110 401.0 257 77.8
THA.LOC104800098 Tarenaya hassleriana HOM05D005529 ORTHO05D006800 6.6e-110 401.0 257 75.5
Nitab4.5_0004541g0010 Nicotiana tabacum HOM05D005529 ORTHO05D006800 8.6e-110 400.6 265 74.7
Ah.05g168410 Amaranthus hybridus HOM05D005529 ORTHO05D006800 3.3e-109 398.7 255 75.7
AUR62034931 Chenopodium quinoa HOM05D005529 ORTHO05D006800 9.5e-109 397.1 271 72.3
Thhalv10019028m.g Eutrema salsugineum HOM05D005529 ORTHO05D006800 9.5e-109 397.1 255 74.9
VMungo0720G3143 Vigna mungo HOM05D005529 ORTHO05D006800 9.5e-109 397.1 257 75.5
CDE04G0217 Ceratophyllum demersum HOM05D005529 ORTHO05D006800 1.2e-108 396.7 255 74.9
AUR62032105 Chenopodium quinoa HOM05D005529 ORTHO05D006800 1.2e-108 396.7 271 72.0
DCAR_019977 Daucus carota HOM05D005529 ORTHO05D006800 1.2e-108 396.7 254 74.4
SGA_v2.0_scaffold161G37858 Striga asiatica HOM05D005529 ORTHO05D006800 1.2e-108 396.7 263 75.7
BcaC08g46609 Brassica carinata HOM05D005529 ORTHO05D006800 2.8e-108 395.6 257 74.3
A07p37940 Brassica napus HOM05D005529 ORTHO05D006800 2.8e-108 395.6 257 74.3
C06p45850 Brassica napus HOM05D005529 ORTHO05D006800 2.8e-108 395.6 257 74.3
BolC6t39637H Brassica oleracea HOM05D005529 ORTHO05D006800 2.8e-108 395.6 257 74.3
BraA07t31359Z Brassica rapa HOM05D005529 ORTHO05D006800 2.8e-108 395.6 257 74.3
Manes.18G096400 Manihot esculenta HOM05D005529 ORTHO05D006800 2.8e-108 395.6 258 76.7
HanXRQChr11g0320531 Helianthus annuus HOM05D005529 ORTHO05D006800 3.6e-108 395.2 257 75.1
Sp5g26810 Schrenkiella parvula HOM05D005529 ORTHO05D006800 4.7e-108 394.8 255 74.5
SpUn0095_0040 Schrenkiella parvula HOM05D005529 ORTHO05D006800 4.7e-108 394.8 255 74.5
AT1G71790 Arabidopsis thaliana HOM05D005529 ORTHO05D006800 6.2e-108 394.4 255 73.7
ECA232G2783 Erigeron canadensis HOM05D005529 ORTHO05D006800 6.2e-108 394.4 256 73.4
TWI34G1474 Tripterygium wilfordii HOM05D005529 ORTHO05D006800 1.1e-107 393.7 257 75.9
PGSC0003DMG400016963 Solanum tuberosum HOM05D005529 ORTHO05D006800 1.4e-107 393.3 300 66.0
AL2G31360 Arabidopsis lyrata HOM05D005529 ORTHO05D006800 3.1e-107 392.1 255 73.3
Carub.0002s1855 Capsella rubella HOM05D005529 ORTHO05D006800 3.1e-107 392.1 255 73.3
MELO3C019956.2 Cucumis melo HOM05D005529 ORTHO05D006800 6.8e-107 391.0 257 79.0
Gohir.A05G247200 Gossypium hirsutum HOM05D005529 ORTHO05D006800 2.0e-106 389.4 257 75.1
Gohir.D05G248700 Gossypium hirsutum HOM05D005529 ORTHO05D006800 2.0e-106 389.4 257 75.1
Gorai.009G259800 Gossypium raimondii HOM05D005529 ORTHO05D006800 2.0e-106 389.4 257 75.1
unitig_32.g11170 Utricularia gibba HOM05D005529 ORTHO05D006800 2.0e-106 389.4 257 73.5
Aa31LG4G8850 Aethionema arabicum HOM05D005529 ORTHO05D006800 3.4e-106 388.7 255 73.7
PSO675G2610 Papaver somniferum HOM05D005529 ORTHO05D006800 5.8e-106 387.9 256 73.8
PSO541G1243 Papaver somniferum HOM05D005529 ORTHO05D006800 2.2e-105 386.0 256 73.4
Nn1g05167 Nelumbo nucifera HOM05D005529 ORTHO05D006800 2.9e-105 385.6 257 73.9
ECA247G3042 Erigeron canadensis HOM05D005529 ORTHO05D006800 4.1e-104 381.7 255 72.2
Cfa018254 Carpinus fangiana HOM05D005529 ORTHO05D006800 2.3e-102 375.9 257 74.3
Lsat_1_v5_gn_9_42620 Lactuca sativa HOM05D005529 ORTHO05D006800 6.6e-102 374.4 252 72.2
Dinv41017 Davidia involucrata HOM05D005529 ORTHO05D006800 3.3e-101 372.1 230 79.6
Lsat_1_v5_gn_1_5401 Lactuca sativa HOM05D005529 ORTHO05D006800 5.8e-98 361.3 254 70.1
Os03g0381200 Oryza sativa ssp. japonica HOM05D005529 ORTHO05D006800 6.4e-97 357.8 257 68.5
TAR381G0607 Trochodendron aralioides HOM05D005529 ORTHO05D006800 1.1e-96 357.1 281 66.9
Nn5g28882 Nelumbo nucifera HOM05D005529 ORTHO05D006800 1.4e-96 356.7 248 70.2
Lj7C387G8 Lonicera japonica HOM05D005529 ORTHO05D006800 7.1e-96 354.4 240 72.1
vmacro21201 Vaccinium macrocarpon HOM05D005529 ORTHO05D006800 6.6e-94 347.8 214 77.6
ATR0564G028 Amborella trichopoda HOM05D005529 ORTHO05D006800 1.1e-93 347.1 231 73.2
Duzib093G1833 Durio zibethinus HOM05D005529 ORTHO05D006800 1.3e-89 333.6 257 66.9
Hma1.2p1_0358F.1_g134920 Hydrangea macrophylla HOM05D005529 ORTHO05D006800 2.9e-89 332.4 213 75.1
Nitab4.5_0004295g0010 Nicotiana tabacum HOM05D005529 ORTHO05D006800 1.6e-87 326.6 223 71.7
Mapoly0006s0028 Marchantia polymorpha HOM05D005529 ORTHO05D006800 1.0e-86 323.9 248 65.7
CDE07G0226 Ceratophyllum demersum HOM05D005529 ORTHO05D006800 1.1e-85 320.5 194 76.3
TAR625G0192 Trochodendron aralioides HOM05D005529 ORTHO05D006800 1.9e-85 319.7 194 78.9
Pp3c1_32040 Physcomitrium patens HOM05D005529 ORTHO05D006800 5.6e-85 318.2 251 64.9
SMO141G0273 Selaginella moellendorffii HOM05D005529 ORTHO05D006800 1.1e-83 313.9 250 63.2
AagrBONN_evm.TU.Sc2ySwM_228.4378 Anthoceros agrestis HOM05D005529 ORTHO05D006800 1.1e-80 303.9 251 62.9
MD10G1039400 Malus domestica HOM05D005529 ORTHO05D006800 2.4e-75 286.2 159 83.6
Dinv13098 Davidia involucrata HOM05D005529 ORTHO05D006800 4.6e-63 245.4 132 87.9
Zm00001eb018520 Zea mays HOM05D005529 ORTHO05D006800 5.3e-59 231.9 170 65.9
PRCOL_00004850 Prasinoderma coloniale HOM05D005529 ORTHO05D006800 3.8e-57 225.7 254 48.4
CARHR290990 Cardamine hirsuta HOM05D005529 ORTHO05D006800 1.1e-56 224.2 153 69.9
Haze_27340 Corylus avellana HOM05D005529 ORTHO05D006800 5.1e-54 215.3 248 45.6
Actinidia02780 Actinidia chinensis HOM05D005529 ORTHO05D006800 8.2e-52 208.0 112 90.2
CSS0032133 Camellia sinensis var. sinensis HOM05D005529 ORTHO05D006800 8.2e-52 208.0 116 80.2
MD10G1040900 Malus domestica HOM05D005529 ORTHO05D006800 9.0e-51 204.5 194 58.2
Ca_10643_v3 Cicer arietinum L. HOM05D005529 ORTHO05D006800 2.2e-49 199.9 142 69.0
Rhsim06G0089200 Rhododendron simsii HOM05D005529 ORTHO05D006800 6.5e-49 198.4 105 90.5
Glyma.20G171766 Glycine max HOM05D005529 ORTHO05D006800 4.6e-47 192.2 105 85.7
Cfa022509 Carpinus fangiana HOM05D005529 ORTHO05D006800 1.5e-45 187.2 267 40.4
Glyma.06G212500 Glycine max HOM05D005529 ORTHO05D006800 1.4e-43 180.6 130 69.2
Lsat_1_v5_gn_8_71180 Lactuca sativa HOM05D005529 ORTHO05D006800 3.1e-43 179.5 157 56.7
HPP92_020840 Vanilla planifolia HOM05D005529 ORTHO05D006800 6.9e-43 178.3 105 81.9
BcaC08g46606 Brassica carinata HOM05D005529 ORTHO05D006800 1.5e-42 177.2 105 80.0
Glyma.09G074800 Glycine max HOM05D005529 ORTHO05D006800 9.1e-35 151.4 114 66.7
AUR62022308 Chenopodium quinoa HOM05D005529 ORTHO05D006800 1.2e-34 151.0 257 40.5
Lsat_1_v5_gn_3_73520 Lactuca sativa HOM05D005529 ORTHO05D006800 2.9e-33 146.4 91 71.4
SalBow7G1408 Salvia bowleyana HOM05D005529 ORTHO05D006800 3.7e-28 129.4 67 92.5
Glyma.04G140500 Glycine max HOM05D005529 ORTHO05D006800 6.3e-28 128.6 104 65.4
HPP92_020745 Vanilla planifolia HOM05D005529 ORTHO05D006800 6.1e-23 112.1 96 59.4
Actinidia17753 Actinidia chinensis HOM05D005529 ORTHO05D006800 8.8e-22 108.2 116 51.7
MD10G1041000 Malus domestica HOM05D005529 ORTHO05D006800 1.6e-18 97.4 54 88.9
HPP92_020744 Vanilla planifolia HOM05D005529 ORTHO05D006800 1.5e-16 90.9 102 48.0
Glyma.16G101900 Glycine max HOM05D005529 ORTHO05D006800 2.0e-13 80.5 60 68.3
VMungo0464G1177 Vigna mungo HOM05D005529 ORTHO05D006800 2.5e-08 63.5 40 77.5


User provided reference genes

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