Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG08G007080 Citrullus lanatus HOM05D006546 ORTHO05D008362 1.2e-261 906.0 466 100.0
CsaV3_6G005120 Cucumis sativus L. HOM05D006546 ORTHO05D008362 6.2e-173 611.3 467 71.1
MELO3C008332.2 Cucumis melo HOM05D006546 ORTHO05D008362 5.2e-172 608.2 468 70.5
Sed0023841 Sechium edule HOM05D006546 ORTHO05D008362 7.9e-152 541.2 469 66.1
Sabra05G0148300 Salix brachista HOM05D006546 ORTHO05D008362 5.7e-134 481.9 466 60.1
Potri.005G194800 Populus trichocarpa HOM05D006546 ORTHO05D008362 3.2e-129 466.1 460 58.0
Cfa018304 Carpinus fangiana HOM05D006546 ORTHO05D008362 1.6e-128 463.8 458 57.4
Atru.chr13.2063_Atru.chr13.2062 Acer truncatum HOM05D006546 ORTHO05D008362 2.1e-128 463.4 456 57.5
CiPaw.16G009700 Carya illinoinensis HOM05D006546 ORTHO05D008362 3.9e-127 459.1 459 58.2
PGR042G3407 Punica granatum HOM05D006546 ORTHO05D008362 3.9e-127 459.1 454 57.3
Haze_17787 Corylus avellana HOM05D006546 ORTHO05D008362 1.5e-126 457.2 458 56.3
Cpa.g.sc49.98 Carica papaya HOM05D006546 ORTHO05D008362 3.3e-126 456.1 468 55.6
TWI34G0343 Tripterygium wilfordii HOM05D006546 ORTHO05D008362 9.7e-126 454.5 453 56.3
CSS0026250 Camellia sinensis var. sinensis HOM05D006546 ORTHO05D008362 2.2e-125 453.4 439 58.3
Gorai.002G231100 Gossypium raimondii HOM05D006546 ORTHO05D008362 3.7e-125 452.6 460 55.9
COL.COLO4_03565 Corchorus olitorius HOM05D006546 ORTHO05D008362 4.8e-125 452.2 466 56.2
Manes.18G093500 Manihot esculenta HOM05D006546 ORTHO05D008362 3.1e-124 449.5 429 58.3
GSVIVG01034559001 Vitis vinifera HOM05D006546 ORTHO05D008362 5.3e-124 448.7 450 56.9
TAR625G0865 Trochodendron aralioides HOM05D006546 ORTHO05D008362 6.9e-124 448.4 460 55.7
Nitab4.5_0006961g0030 Nicotiana tabacum HOM05D006546 ORTHO05D008362 1.5e-123 447.2 429 58.3
vmacro01645 Vaccinium macrocarpon HOM05D006546 ORTHO05D008362 2.0e-123 446.8 456 56.6
Prupe.8G036900 Prunus persica HOM05D006546 ORTHO05D008362 2.6e-123 446.4 457 56.2
CsaV3_6G005110 Cucumis sativus L. HOM05D006546 ORTHO05D008362 1.7e-122 443.7 467 56.7
arahy.Tifrunner.gnm1.ann1.PKA9SD Arachis hypogaea HOM05D006546 ORTHO05D008362 5.0e-122 442.2 460 55.4
AUR62040584 Chenopodium quinoa HOM05D006546 ORTHO05D008362 5.0e-122 442.2 446 56.5
Glyma.16G164900 Glycine max HOM05D006546 ORTHO05D008362 6.5e-122 441.8 450 55.1
Lsat_1_v5_gn_1_5280 Lactuca sativa HOM05D006546 ORTHO05D008362 6.5e-122 441.8 451 57.2
Medtr6g037530 Medicago truncatula HOM05D006546 ORTHO05D008362 1.4e-121 440.7 456 54.8
Lj4A701T20 Lonicera japonica HOM05D006546 ORTHO05D008362 1.9e-121 440.3 427 57.4
Thecc.08G155700 Theobroma cacao HOM05D006546 ORTHO05D008362 1.9e-121 440.3 457 54.9
Duzib093G0633 Durio zibethinus HOM05D006546 ORTHO05D008362 2.5e-121 439.9 459 54.9
MD05G1030000 Malus domestica HOM05D006546 ORTHO05D008362 2.5e-121 439.9 470 54.9
Actinidia17779 Actinidia chinensis HOM05D006546 ORTHO05D008362 3.2e-121 439.5 441 56.7
CANSAT25G3312 Cannabis sativa HOM05D006546 ORTHO05D008362 3.2e-121 439.5 453 54.7
Nn5g28792 Nelumbo nucifera HOM05D006546 ORTHO05D008362 4.2e-121 439.1 460 54.6
SGA_v2.0_scaffold195G40788 Striga asiatica HOM05D006546 ORTHO05D008362 7.9e-120 434.9 398 59.5
VMungo0464G1775 Vigna mungo HOM05D006546 ORTHO05D008362 3.0e-119 433.0 450 55.1
Rhsim11G0111500 Rhododendron simsii HOM05D006546 ORTHO05D008362 3.9e-119 432.6 451 56.1
Psat1g100360 Pisum sativum HOM05D006546 ORTHO05D008362 8.8e-119 431.4 462 53.2
HanXRQChr04g0115661 Helianthus annuus HOM05D006546 ORTHO05D008362 2.0e-118 430.3 444 55.2
PSO541G2164 Papaver somniferum HOM05D006546 ORTHO05D008362 3.3e-118 429.5 398 58.8
SalBow7G0432 Salvia bowleyana HOM05D006546 ORTHO05D008362 3.3e-118 429.5 455 54.9
Nitab4.5_0001649g0020 Nicotiana tabacum HOM05D006546 ORTHO05D008362 4.3e-118 429.1 453 54.3
Hund17460 Selenicereus undatus HOM05D006546 ORTHO05D008362 4.3e-118 429.1 419 57.5
Solyc04g071700.3 Solanum lycopersicum HOM05D006546 ORTHO05D008362 7.4e-118 428.3 441 54.6
Sopen04g027680 Solanum pennellii HOM05D006546 ORTHO05D008362 7.4e-118 428.3 441 54.6
PGSC0003DMG400006373 Solanum tuberosum HOM05D006546 ORTHO05D008362 7.4e-118 428.3 441 54.6
Aqoxy6G00397 Aquilegia oxysepala HOM05D006546 ORTHO05D008362 1.3e-117 427.6 462 54.3
ECA247G1092 Erigeron canadensis HOM05D006546 ORTHO05D008362 1.3e-117 427.6 399 57.9
Migut.C00976 Erythranthe guttata HOM05D006546 ORTHO05D008362 1.7e-117 427.2 457 53.4
FAN20G1322 Fragaria x ananassa HOM05D006546 ORTHO05D008362 1.7e-117 427.2 451 54.5
Lj2g0010381 Lotus japonicus HOM05D006546 ORTHO05D008362 1.7e-117 427.2 466 55.2
Phvul.004G092300 Phaseolus vulgaris HOM05D006546 ORTHO05D008362 1.7e-117 427.2 453 54.1
Ca_03250_v3 Cicer arietinum L. HOM05D006546 ORTHO05D008362 2.2e-117 426.8 456 54.4
FvH4_2g13270 Fragaria vesca HOM05D006546 ORTHO05D008362 2.8e-117 426.4 402 58.5
Cc10_g15070 Coffea canephora HOM05D006546 ORTHO05D008362 3.7e-117 426.0 442 54.8
MSTRG.1097 Avicennia marina HOM05D006546 ORTHO05D008362 3.1e-116 422.9 455 53.2
QL02p037672 Quercus lobata HOM05D006546 ORTHO05D008362 2.0e-115 420.2 395 59.0
Aa31LG4G6800 Aethionema arabicum HOM05D006546 ORTHO05D008362 4.5e-115 419.1 402 55.5
unitig_747.g21515 Utricularia gibba HOM05D006546 ORTHO05D008362 4.5e-115 419.1 394 58.6
BraA07t30475Z Brassica rapa HOM05D006546 ORTHO05D008362 5.9e-115 418.7 397 55.9
A07p28390 Brassica napus HOM05D006546 ORTHO05D008362 1.3e-114 417.5 397 55.7
AL2G36880 Arabidopsis lyrata HOM05D006546 ORTHO05D008362 1.7e-114 417.2 447 51.9
AT1G76730 Arabidopsis thaliana HOM05D006546 ORTHO05D008362 2.2e-114 416.8 405 55.1
C06p31830 Brassica napus HOM05D006546 ORTHO05D008362 2.2e-114 416.8 397 56.2
BolC6t38311H Brassica oleracea HOM05D006546 ORTHO05D008362 2.2e-114 416.8 397 56.2
Sc26g0002400 Simmondsia chinensis HOM05D006546 ORTHO05D008362 2.9e-114 416.4 453 53.6
Thhalv10018779m.g Eutrema salsugineum HOM05D006546 ORTHO05D008362 8.5e-114 414.8 417 53.7
BcaC08g45513 Brassica carinata HOM05D006546 ORTHO05D008362 1.1e-113 414.5 395 55.4
Sp5g31870 Schrenkiella parvula HOM05D006546 ORTHO05D008362 1.4e-113 414.1 417 54.0
QL02p038646 Quercus lobata HOM05D006546 ORTHO05D008362 2.5e-113 413.3 453 54.3
ATR0584G152 Amborella trichopoda HOM05D006546 ORTHO05D008362 4.2e-113 412.5 397 57.2
Carub.0002s2364 Capsella rubella HOM05D006546 ORTHO05D008362 4.2e-113 412.5 405 54.3
FAN15G0764 Fragaria x ananassa HOM05D006546 ORTHO05D008362 1.2e-112 411.0 460 52.8
AUR62026675 Chenopodium quinoa HOM05D006546 ORTHO05D008362 7.9e-112 408.3 388 58.0
Oeu002061.1 Olea europaea HOM05D006546 ORTHO05D008362 1.5e-110 404.1 411 55.2
CAN.G264.10 Capsicum annuum HOM05D006546 ORTHO05D008362 6.3e-109 398.7 370 57.8
BcaB02g07073 Brassica carinata HOM05D006546 ORTHO05D008362 1.8e-108 397.1 380 55.5
EL10Ac1g01586 Beta vulgaris HOM05D006546 ORTHO05D008362 3.5e-107 392.9 418 53.8
Zm00001eb407750 Zea mays HOM05D006546 ORTHO05D008362 2.2e-106 390.2 401 54.4
Peaxi162Scf00079g02332 Petunia axillaris HOM05D006546 ORTHO05D008362 9.4e-105 384.8 453 50.6
MBI19_g24720_MAGBIO Magnolia biondii HOM05D006546 ORTHO05D008362 1.4e-103 380.9 484 49.4
HPP92_004409 Vanilla planifolia HOM05D006546 ORTHO05D008362 4.0e-103 379.4 392 53.8
Os12g0168000 Oryza sativa ssp. japonica HOM05D006546 ORTHO05D008362 4.8e-101 372.5 400 53.2
CBR_g53679 Chara braunii HOM05D006546 ORTHO05D008362 7.7e-99 365.2 408 51.2
Pp3c18_17520 Physcomitrium patens HOM05D006546 ORTHO05D008362 1.7e-98 364.0 398 52.3
arahy.Tifrunner.gnm1.ann1.AD4V0Z Arachis hypogaea HOM05D006546 ORTHO05D008362 2.9e-98 363.2 517 45.5
AagrBONN_evm.TU.Sc2ySwM_228.4531 Anthoceros agrestis HOM05D006546 ORTHO05D008362 2.5e-97 360.1 400 50.0
Ciclev10001828m.g Citrus clementina HOM05D006546 ORTHO05D008362 6.8e-95 352.1 386 52.6
SMO340G0128 Selaginella moellendorffii HOM05D006546 ORTHO05D008362 8.8e-95 351.7 382 50.3
Mapoly0007s0250 Marchantia polymorpha HOM05D006546 ORTHO05D008362 1.3e-93 347.8 435 45.7
Eucgr.F02694 Eucalyptus grandis HOM05D006546 ORTHO05D008362 6.1e-88 328.9 307 59.0
Cre13.g587450 Chlamydomonas reinhardtii HOM05D006546 ORTHO05D008362 5.7e-86 322.4 401 46.6
Gohir.A01G197500 Gossypium hirsutum HOM05D006546 ORTHO05D008362 9.8e-78 295.0 253 62.8
FAN27G2273 Fragaria x ananassa HOM05D006546 ORTHO05D008362 1.7e-77 294.3 302 56.0
Gohir.D01G187700 Gossypium hirsutum HOM05D006546 ORTHO05D008362 2.4e-76 290.4 253 62.1
CARHR070270 Cardamine hirsuta HOM05D006546 ORTHO05D008362 1.8e-71 274.2 293 52.9
MCO03G555 Micromonas commoda HOM05D006546 ORTHO05D008362 2.3e-71 273.9 421 41.3
Dinv41054 Davidia involucrata HOM05D006546 ORTHO05D008362 7.0e-68 262.3 260 57.3
Ah.14g079510 Amaranthus hybridus HOM05D006546 ORTHO05D008362 1.0e-66 258.5 292 53.4
TPR.G39968 Trifolium pratense HOM05D006546 ORTHO05D008362 4.7e-64 249.6 257 55.6
Ah.00g001170 Amaranthus hybridus HOM05D006546 ORTHO05D008362 1.7e-61 241.1 280 52.5
Ah.14g079490 Amaranthus hybridus HOM05D006546 ORTHO05D008362 3.7e-61 240.0 280 52.1
Glyma.02G080402 Glycine max HOM05D006546 ORTHO05D008362 6.0e-59 232.6 144 76.4
SMO137G0185 Selaginella moellendorffii HOM05D006546 ORTHO05D008362 3.9e-58 229.9 357 38.1
FAN24G0701 Fragaria x ananassa HOM05D006546 ORTHO05D008362 1.1e-57 228.4 282 50.0
RcHm_v2.0_Chr6g0274681 Rosa chinensis HOM05D006546 ORTHO05D008362 3.3e-57 226.9 269 50.9
THA.LOC104803355 Tarenaya hassleriana HOM05D006546 ORTHO05D008362 6.2e-56 222.6 219 53.4
TPR.G28004 Trifolium pratense HOM05D006546 ORTHO05D008362 5.2e-55 219.5 456 35.7
THA.LOC104810664 Tarenaya hassleriana HOM05D006546 ORTHO05D008362 2.1e-51 207.6 240 50.0
THA.LOC104820721 Tarenaya hassleriana HOM05D006546 ORTHO05D008362 6.0e-51 206.1 141 67.4
Eucgr.K02158 Eucalyptus grandis HOM05D006546 ORTHO05D008362 1.2e-48 198.4 280 43.2
SMO182G0010 Selaginella moellendorffii HOM05D006546 ORTHO05D008362 7.6e-46 189.1 339 35.7
Ah.04g160680 Amaranthus hybridus HOM05D006546 ORTHO05D008362 1.3e-45 188.3 106 86.8
SEGI_13550 Sequoiadendron giganteum HOM05D006546 ORTHO05D008362 1.5e-33 148.3 97 72.2
CDE08G0315 Ceratophyllum demersum HOM05D006546 ORTHO05D008362 5.3e-31 139.8 113 61.9
ECA247G1774 Erigeron canadensis HOM05D006546 ORTHO05D000004 6.2e-24 116.3 80 73.8
SMO063G0001 Selaginella moellendorffii HOM05D006546 ORTHO05D008362 4.5e-22 110.2 104 49.0
Hund17461 Selenicereus undatus HOM05D000185 ORTHO05D000105 1.0e-21 109.0 258 32.6
MCO02G484 Micromonas commoda HOM05D006546 ORTHO05D008362 5.5e-20 103.2 328 26.2
Medtr6g037560 Medicago truncatula HOM05D006546 ORTHO05D008362 1.4e-15 88.6 48 81.2


User provided reference genes

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