Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG08G007050 Citrullus lanatus HOM05D006151 ORTHO05D007487 2.0e-130 469.2 241 100.0
MELO3C008336.2 Cucumis melo HOM05D006151 ORTHO05D007487 9.2e-112 407.1 239 87.0
CsaV3_6G005160 Cucumis sativus L. HOM05D006151 ORTHO05D007487 1.1e-91 340.5 228 78.1
Sed0016357 Sechium edule HOM05D006151 ORTHO05D007487 5.2e-91 338.2 244 74.6
Sed0009804 Sechium edule HOM05D006151 ORTHO05D007487 1.5e-77 293.5 240 71.2
CANSAT25G1414 Cannabis sativa HOM05D006151 ORTHO05D007487 6.4e-65 251.5 233 56.7
Thecc.08G153600 Theobroma cacao HOM05D006151 ORTHO05D007487 8.4e-65 251.1 240 59.2
Cfa018318 Carpinus fangiana HOM05D006151 ORTHO05D007487 1.1e-64 250.8 217 59.9
Duzib116G0486 Durio zibethinus HOM05D006151 ORTHO05D007487 7.9e-63 244.6 240 58.8
Duzib041G0750 Durio zibethinus HOM05D006151 ORTHO05D007487 1.3e-62 243.8 247 56.7
Dinv25871 Davidia involucrata HOM05D006151 ORTHO05D007487 3.9e-62 242.3 236 57.2
Actinidia04761 Actinidia chinensis HOM05D006151 ORTHO05D007487 5.1e-62 241.9 213 62.0
Lj5g0026688 Lotus japonicus HOM05D006151 ORTHO05D007487 8.7e-62 241.1 244 55.7
Manes.02G180000 Manihot esculenta HOM05D006151 ORTHO05D007487 4.3e-61 238.8 242 53.3
COL.COLO4_04528 Corchorus olitorius HOM05D006151 ORTHO05D007487 1.3e-60 237.3 241 56.8
CSS0023884 Camellia sinensis var. sinensis HOM05D006151 ORTHO05D007487 1.6e-60 236.9 241 57.3
TAR628G1632 Trochodendron aralioides HOM05D006151 ORTHO05D007487 1.6e-60 236.9 224 58.0
GSVIVG01034539001 Vitis vinifera HOM05D006151 ORTHO05D007487 2.8e-60 236.1 234 53.4
TAR381G1121 Trochodendron aralioides HOM05D006151 ORTHO05D007487 6.2e-60 235.0 211 58.8
Atru.chr13.2098 Acer truncatum HOM05D006151 ORTHO05D007487 1.8e-59 233.4 234 54.7
Gohir.A02G063800 Gossypium hirsutum HOM05D006151 ORTHO05D007487 3.1e-59 232.6 216 59.7
Gorai.005G078700 Gossypium raimondii HOM05D006151 ORTHO05D007487 3.1e-59 232.6 238 57.1
Cpa.g.sc21.206 Carica papaya HOM05D006151 ORTHO05D007487 5.3e-59 231.9 253 53.4
PGSC0003DMG400024091 Solanum tuberosum HOM05D006151 ORTHO05D007487 5.3e-59 231.9 235 54.0
Cc10_g14430 Coffea canephora HOM05D006151 ORTHO05D007487 6.9e-59 231.5 233 56.7
Ciclev10002306m.g Citrus clementina HOM05D006151 ORTHO05D007487 1.2e-58 230.7 245 54.3
Nitab4.5_0001062g0090 Nicotiana tabacum HOM05D006151 ORTHO05D007487 1.5e-58 230.3 212 58.5
CAN.G268.27 Capsicum annuum HOM05D006151 ORTHO05D007487 2.6e-58 229.6 234 55.1
Gohir.D02G069400 Gossypium hirsutum HOM05D006151 ORTHO05D007487 2.6e-58 229.6 238 56.7
Duzib093G0584 Durio zibethinus HOM05D006151 ORTHO05D007487 3.4e-58 229.2 240 56.2
Rhsim11G0083500 Rhododendron simsii HOM05D006151 ORTHO05D007487 3.4e-58 229.2 218 56.9
Solyc04g071500.4 Solanum lycopersicum HOM05D006151 ORTHO05D007487 5.8e-58 228.4 233 55.4
Sopen04g027470 Solanum pennellii HOM05D006151 ORTHO05D007487 7.6e-58 228.0 233 54.9
Eucgr.F04235 Eucalyptus grandis HOM05D006151 ORTHO05D007487 9.9e-58 227.6 247 52.2
Gohir.D05G244900 Gossypium hirsutum HOM05D006151 ORTHO05D007487 1.3e-57 227.3 244 53.3
Nitab4.5_0009071g0020 Nicotiana tabacum HOM05D006151 ORTHO05D007487 2.9e-57 226.1 232 56.0
Peaxi162Scf00599g00048 Petunia axillaris HOM05D006151 ORTHO05D007487 2.9e-57 226.1 234 54.7
Glyma.20G168200 Glycine max HOM05D006151 ORTHO05D007487 4.9e-57 225.3 240 54.6
Potri.002G067600 Populus trichocarpa HOM05D006151 ORTHO05D007487 4.2e-56 222.2 245 52.7
Lalb_Chr06g0161651 Lupinus albus HOM05D006151 ORTHO05D007487 1.2e-55 220.7 241 53.9
FAN24G0867 Fragaria x ananassa HOM05D006151 ORTHO05D007487 2.1e-55 219.9 244 52.0
Glyma.10G223700 Glycine max HOM05D006151 ORTHO05D007487 2.7e-55 219.5 234 54.7
Phvul.007G081100 Phaseolus vulgaris HOM05D006151 ORTHO05D007487 2.7e-55 219.5 239 52.7
FvH4_2g13650 Fragaria vesca HOM05D006151 ORTHO05D007487 7.9e-55 218.0 244 51.6
FAN27G2560 Fragaria x ananassa HOM05D006151 ORTHO05D007487 7.9e-55 218.0 249 51.4
Oeu046040.1 Olea europaea HOM05D006151 ORTHO05D007487 7.9e-55 218.0 240 54.6
QL02p039028 Quercus lobata HOM05D006151 ORTHO05D007487 7.9e-55 218.0 240 53.3
Dinv41078 Davidia involucrata HOM05D006151 ORTHO05D007487 1.0e-54 217.6 240 52.9
RcHm_v2.0_Chr6g0275291 Rosa chinensis HOM05D006151 ORTHO05D007487 1.3e-54 217.2 233 53.2
FAN15G1313 Fragaria x ananassa HOM05D006151 ORTHO05D007487 1.8e-54 216.9 244 52.0
FAN20G0746 Fragaria x ananassa HOM05D006151 ORTHO05D007487 1.8e-54 216.9 251 51.0
MD05G1026900 Malus domestica HOM05D006151 ORTHO05D007487 1.8e-54 216.9 246 52.4
VMungo0720G2232 Vigna mungo HOM05D006151 ORTHO05D007487 2.3e-54 216.5 221 55.7
CiPaw.15G015800 Carya illinoinensis HOM05D006151 ORTHO05D007487 5.1e-54 215.3 234 50.0
TWI34G1794 Tripterygium wilfordii HOM05D006151 ORTHO05D007487 6.7e-54 214.9 240 52.1
Potri.005G192800 Populus trichocarpa HOM05D006151 ORTHO05D007487 8.7e-54 214.5 241 55.6
MD10G1026200 Malus domestica HOM05D006151 ORTHO05D007487 1.9e-53 213.4 244 51.6
Nn5g28758 Nelumbo nucifera HOM05D006151 ORTHO05D007487 1.9e-53 213.4 209 52.6
MSTRG.1087 Avicennia marina HOM05D006151 ORTHO05D007487 4.3e-53 212.2 237 51.5
Hma1.2p1_0105F.1_g050630 Hydrangea macrophylla HOM05D006151 ORTHO05D007487 7.4e-53 211.5 234 54.7
vmacro01457 Vaccinium macrocarpon HOM05D006151 ORTHO05D007487 7.4e-53 211.5 206 59.7
Prupe.8G031400 Prunus persica HOM05D006151 ORTHO05D007487 2.8e-52 209.5 248 50.8
arahy.Tifrunner.gnm1.ann1.2F6CI2 Arachis hypogaea HOM05D006151 ORTHO05D007487 6.2e-52 208.4 238 53.8
DCAR_001140 Daucus carota HOM05D006151 ORTHO05D007487 6.2e-52 208.4 238 52.5
Gohir.A05G243900 Gossypium hirsutum HOM05D006151 ORTHO05D007487 6.2e-52 208.4 219 53.0
Gorai.009G254700 Gossypium raimondii HOM05D006151 ORTHO05D007487 3.1e-51 206.1 244 50.4
Medtr1g098580 Medicago truncatula HOM05D006151 ORTHO05D007487 2.0e-50 203.4 244 51.2
Sp1g18760 Schrenkiella parvula HOM05D006151 ORTHO05D007487 2.6e-50 203.0 240 51.2
Nn1g06074 Nelumbo nucifera HOM05D006151 ORTHO05D007487 3.4e-50 202.6 211 52.1
PSO447G0272 Papaver somniferum HOM05D006151 ORTHO05D007487 3.4e-50 202.6 238 49.6
CARHR021560 Cardamine hirsuta HOM05D006151 ORTHO05D007487 5.8e-50 201.8 245 51.4
PSO210G3290 Papaver somniferum HOM05D006151 ORTHO05D007487 1.0e-49 201.1 235 48.1
Manes.18G092600 Manihot esculenta HOM05D006151 ORTHO05D007487 1.3e-49 200.7 217 53.5
Carub.0001s2055 Capsella rubella HOM05D006151 ORTHO05D007487 2.9e-49 199.5 246 50.0
Migut.C00998 Erythranthe guttata HOM05D006151 ORTHO05D007487 2.9e-49 199.5 235 52.3
THA.LOC104813720 Tarenaya hassleriana HOM05D006151 ORTHO05D007487 1.1e-48 197.6 229 51.1
AL1G34140 Arabidopsis lyrata HOM05D006151 ORTHO05D007487 1.9e-48 196.8 240 50.8
AT1G21090 Arabidopsis thaliana HOM05D006151 ORTHO05D007487 1.9e-48 196.8 240 50.4
BcaB07g32102 Brassica carinata HOM05D006151 ORTHO05D007487 4.2e-48 195.7 243 51.0
Psat6g192320 Pisum sativum HOM05D006151 ORTHO05D007487 4.2e-48 195.7 243 49.0
THA.LOC104812035 Tarenaya hassleriana HOM05D006151 ORTHO05D007487 1.2e-47 194.1 214 49.5
BcaB03g14281 Brassica carinata HOM05D006151 ORTHO05D007487 2.1e-47 193.4 241 51.5
Ca_10677_v3 Cicer arietinum L. HOM05D006151 ORTHO05D007487 2.7e-47 193.0 219 53.4
SGA_v2.0_scaffold24G10349 Striga asiatica HOM05D000219 ORTHO05D000226 2.7e-47 193.0 199 53.3
Glyma.16G166000 Glycine max HOM05D006151 ORTHO05D007487 7.9e-47 191.4 240 50.0
PGR044G2378 Punica granatum HOM05D006151 ORTHO05D007487 1.3e-46 190.7 234 47.9
PGR100G0011 Punica granatum HOM05D006151 ORTHO05D007487 1.3e-46 190.7 234 47.9
MBI09_g40713_MAGBIO Magnolia biondii HOM05D006151 ORTHO05D007487 6.7e-46 188.3 212 54.2
TPR.G17045 Trifolium pratense HOM05D006151 ORTHO05D007487 6.7e-46 188.3 242 47.5
PGR080G0005 Punica granatum HOM05D006151 ORTHO05D007487 8.7e-46 188.0 213 50.2
C05p19820 Brassica napus HOM05D006151 ORTHO05D007487 9.6e-45 184.5 237 50.2
BolC5t30681H Brassica oleracea HOM05D006151 ORTHO05D007487 9.6e-45 184.5 237 50.2
AUR62013592 Chenopodium quinoa HOM05D006151 ORTHO05D007487 1.6e-44 183.7 214 48.6
HanXRQChr05g0161971 Helianthus annuus HOM05D006151 ORTHO05D007487 2.1e-44 183.3 241 47.7
AUR62026702 Chenopodium quinoa HOM05D006151 ORTHO05D007487 2.8e-44 183.0 212 48.1
Hund26694 Selenicereus undatus HOM05D006151 ORTHO05D007487 3.7e-44 182.6 217 48.8
BraA06t24819Z Brassica rapa HOM05D006151 ORTHO05D007487 4.8e-44 182.2 240 49.2
TWI60G0448 Tripterygium wilfordii HOM05D006151 ORTHO05D007487 4.8e-44 182.2 190 52.6
Phvul.004G093600 Phaseolus vulgaris HOM05D006151 ORTHO05D007487 1.8e-43 180.3 216 50.9
A06p17160 Brassica napus HOM05D006151 ORTHO05D007487 2.4e-43 179.9 240 48.8
VMungo0464G0684 Vigna mungo HOM05D006151 ORTHO05D007487 5.3e-43 178.7 238 47.9
Lsat_1_v5_gn_6_100560 Lactuca sativa HOM05D006151 ORTHO05D007487 9.0e-43 177.9 258 44.6
Aqoxy5G02075 Aquilegia oxysepala HOM05D006151 ORTHO05D007487 1.5e-42 177.2 217 48.8
Nitab4.5_0002487g0030 Nicotiana tabacum HOM05D006151 ORTHO05D007487 3.8e-41 172.6 198 53.0
Peaxi162Scf01294g00115 Petunia axillaris HOM05D006151 ORTHO05D007487 8.5e-41 171.4 238 47.1
ECA246G2194 Erigeron canadensis HOM05D006151 ORTHO05D007487 3.2e-40 169.5 261 43.7
Thhalv10008611m.g Eutrema salsugineum HOM05D006151 ORTHO05D007487 1.2e-39 167.5 245 45.3
arahy.Tifrunner.gnm1.ann1.5IW37T Arachis hypogaea HOM05D006151 ORTHO05D007487 2.5e-37 159.8 190 52.1
EL10Ac1g01556 Beta vulgaris HOM05D006151 ORTHO05D007487 1.3e-36 157.5 205 47.8
Aa31LG7G5240 Aethionema arabicum HOM05D006151 ORTHO05D007487 2.2e-36 156.8 194 47.9
BcaC05g26017 Brassica carinata HOM05D006151 ORTHO05D007487 4.1e-35 152.5 202 49.5
BcaC06g34887 Brassica carinata HOM05D006151 ORTHO05D007487 6.9e-35 151.8 234 42.7
A07p15290 Brassica napus HOM05D006151 ORTHO05D007487 6.9e-35 151.8 242 43.4
BolC7t42748H Brassica oleracea HOM05D006151 ORTHO05D007487 6.9e-35 151.8 234 42.7
Hund17438 Selenicereus undatus HOM05D006151 ORTHO05D007487 9.0e-35 151.4 243 39.5
BraA07t29267Z Brassica rapa HOM05D006151 ORTHO05D007487 2.0e-34 150.2 242 42.6
C07p22470 Brassica napus HOM05D006151 ORTHO05D007487 7.7e-34 148.3 178 49.4
Actinidia29533 Actinidia chinensis HOM05D006151 ORTHO05D007487 1.0e-33 147.9 123 61.8
unitig_748.g7705 Utricularia gibba HOM05D006151 ORTHO05D007487 1.0e-33 147.9 235 43.0
Nitab4.5_0010143g0010 Nicotiana tabacum HOM05D006151 ORTHO05D007487 3.4e-26 122.9 244 40.2
Lj7C374T8 Lonicera japonica HOM05D006151 ORTHO05D007487 2.9e-25 119.8 155 47.7
Ah.05g167920 Amaranthus hybridus HOM05D006151 ORTHO05D007487 3.8e-25 119.4 217 38.7
HPP92_004418 Vanilla planifolia HOM05D006151 ORTHO05D007487 2.7e-23 113.2 222 34.7
Peaxi162Scf00476g00615 Petunia axillaris HOM05D002901 ORTHO05D003183 1.1e-19 101.3 86 60.5
CDE08G0602 Ceratophyllum demersum HOM05D006151 ORTHO05D007487 5.9e-18 95.5 238 36.1
Sc02g0004030 Simmondsia chinensis HOM05D006151 ORTHO05D007487 2.9e-17 93.2 157 40.8
GSVIVG01026618001 Vitis vinifera HOM05D006151 ORTHO05D007487 2.7e-15 86.7 113 49.6
Nn1g02131 Nelumbo nucifera HOM05D006151 ORTHO05D007487 1.1e-11 74.7 174 34.5


User provided reference genes

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