Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG08G006150 Citrullus lanatus HOM05D007988 ORTHO05D009824 1.1e-99 367.1 257 100.0
MELO3C008455.2 Cucumis melo HOM05D007988 ORTHO05D009824 3.6e-82 308.9 266 78.6
CsaV3_6G031310 Cucumis sativus L. HOM05D007988 ORTHO05D009824 6.2e-66 255.0 239 73.6
Sed0016946 Sechium edule HOM05D007988 ORTHO05D009824 5.4e-54 215.3 266 55.6
Sed0000785 Sechium edule HOM05D007988 ORTHO05D009824 9.1e-25 118.2 174 52.9
Manes.02G170000 Manihot esculenta HOM05D007988 ORTHO05D009824 3.2e-22 109.8 315 40.3
Prupe.1G442100 Prunus persica HOM05D007988 ORTHO05D009824 4.4e-19 99.4 294 42.9
Haze_17653 Corylus avellana HOM05D007988 ORTHO05D009824 6.3e-18 95.5 301 38.2
FAN27G1764 Fragaria x ananassa HOM05D007988 ORTHO05D009824 1.1e-17 94.7 296 46.3
Potri.002G076200 Populus trichocarpa HOM05D007988 ORTHO05D009824 2.4e-17 93.6 317 36.9
Ciclev10004037m.g Citrus clementina HOM05D007988 ORTHO05D009824 4.1e-17 92.8 217 38.2
FvH4_2g35040 Fragaria vesca HOM05D007988 ORTHO05D009824 4.1e-17 92.8 300 47.7
CiPaw.16G021200 Carya illinoinensis HOM05D007988 ORTHO05D009824 5.3e-17 92.4 214 36.9
TAR381G0794 Trochodendron aralioides HOM05D007988 ORTHO05D009824 1.5e-16 90.9 301 37.5
CiPaw.15G029500 Carya illinoinensis HOM05D007988 ORTHO05D009824 2.6e-16 90.1 316 37.0
TWI34G1662 Tripterygium wilfordii HOM05D007988 ORTHO05D009824 2.6e-16 90.1 212 37.3
TWI60G0631 Tripterygium wilfordii HOM05D007988 ORTHO05D009824 4.5e-16 89.4 318 34.0
RcHm_v2.0_Chr6g0306951 Rosa chinensis HOM05D007988 ORTHO05D009824 2.9e-15 86.7 300 39.7
FAN15G1013 Fragaria x ananassa HOM05D007988 ORTHO05D009824 5.0e-15 85.9 189 41.8
Thecc.08G135700 Theobroma cacao HOM05D007988 ORTHO05D009824 6.5e-15 85.5 319 39.5
Lj1g0027207 Lotus japonicus HOM05D007988 ORTHO05D009824 1.9e-14 84.0 214 37.4
MD15G1088100 Malus domestica HOM05D007988 ORTHO05D009824 1.9e-14 84.0 324 42.0
QL09p030989 Quercus lobata HOM05D007988 ORTHO05D009824 3.2e-14 83.2 316 38.9
Duzib116G0104 Durio zibethinus HOM05D007988 ORTHO05D009824 7.2e-14 82.0 216 37.5
Gohir.A05G239200 Gossypium hirsutum HOM05D007988 ORTHO05D009824 9.4e-14 81.6 347 34.9
Gohir.D05G240900 Gossypium hirsutum HOM05D007988 ORTHO05D009824 9.4e-14 81.6 348 34.2
Gorai.009G250000 Gossypium raimondii HOM05D007988 ORTHO05D009824 9.4e-14 81.6 348 34.2
Duzib041G0811 Durio zibethinus HOM05D007988 ORTHO05D009824 2.1e-13 80.5 220 36.4
CSS0046822 Camellia sinensis var. sinensis HOM05D007988 ORTHO05D009824 3.6e-13 79.7 308 34.1
GSVIVG01008783001 Vitis vinifera HOM05D007988 ORTHO05D009824 3.6e-13 79.7 321 37.4
Duzib093G1224 Durio zibethinus HOM05D007988 ORTHO05D009824 1.0e-12 78.2 223 35.0
Cpa.g.sc64.159 Carica papaya HOM05D007988 ORTHO05D009824 1.4e-12 77.8 330 37.3
Ca_16619_v3 Cicer arietinum L. HOM05D007988 ORTHO05D009824 1.5e-11 74.3 315 40.0
FAN20G0590 Fragaria x ananassa HOM05D007988 ORTHO05D009824 1.5e-11 74.3 137 48.2
COL.COLO4_33785 Corchorus olitorius HOM05D007988 ORTHO05D009824 2.0e-11 73.9 324 39.2
Sabra05G0140800 Salix brachista HOM05D007988 ORTHO05D009824 4.4e-11 72.8 218 34.4
Psat0s3071g0240 Pisum sativum HOM05D007988 ORTHO05D009824 5.7e-11 72.4 198 39.4
Glyma.04G244300 Glycine max HOM05D007988 ORTHO05D009824 7.4e-11 72.0 337 37.4
Phvul.009G131400 Phaseolus vulgaris HOM05D007988 ORTHO05D009824 7.4e-11 72.0 232 32.8
Actinidia29496 Actinidia chinensis HOM05D000744 ORTHO05D000332 1.7e-10 70.9 188 39.4
Lj4P663T19 Lonicera japonica HOM05D007988 ORTHO05D009824 4.8e-10 69.3 315 32.7
Lj4P666T14 Lonicera japonica HOM05D007988 ORTHO05D009824 4.8e-10 69.3 315 32.7
Rhsim11G0074200 Rhododendron simsii HOM05D007988 ORTHO05D009824 4.8e-10 69.3 206 36.9
TPR.G6352 Trifolium pratense HOM05D007988 ORTHO05D009824 8.2e-10 68.6 198 38.9
Dinv37735 Davidia involucrata HOM05D007988 ORTHO05D009824 1.1e-09 68.2 148 34.5
Nn5g28477 Nelumbo nucifera HOM05D007988 ORTHO05D009824 4.1e-09 66.2 313 39.9
Medtr3g088735 Medicago truncatula HOM05D007988 ORTHO05D009824 5.3e-09 65.9 300 40.0
THA.LOC104813286 Tarenaya hassleriana HOM05D012069 ORTHO05D009824 7.0e-09 65.5 196 35.7
VMungo1309G2256 Vigna mungo HOM05D007988 ORTHO05D009824 7.0e-09 65.5 213 32.9
Lalb_Chr10g0101461 Lupinus albus HOM05D007988 ORTHO05D009824 9.1e-09 65.1 206 35.9
Eucgr.F02525 Eucalyptus grandis HOM05D007988 ORTHO05D009824 1.2e-08 64.7 331 34.7
Atru.chr13.1616 Acer truncatum HOM05D007988 ORTHO05D009824 2.0e-08 63.9 312 38.5
Oeu022143.1 Olea europaea HOM05D007988 ORTHO05D009824 3.5e-08 63.2 226 29.6
SGA_v2.0_scaffold52G18904 Striga asiatica HOM05D007988 ORTHO05D009824 1.7e-07 60.8 283 30.4
Nn1g08990 Nelumbo nucifera HOM05D007988 ORTHO05D009824 2.9e-07 60.1 210 31.4
CAN.G46.16 Capsicum annuum HOM05D007988 ORTHO05D009824 6.5e-07 58.9 332 34.3
CSS0018515 Camellia sinensis var. sinensis HOM05D007988 ORTHO05D009824 2.5e-06 57.0 133 42.1
PGSC0003DMG400002385 Solanum tuberosum HOM05D007988 ORTHO05D009824 5.5e-06 55.8 172 36.0
Cc10_g13460 Coffea canephora HOM05D007988 ORTHO05D009824 9.4e-06 55.1 220 30.0


User provided reference genes

Program Settings