Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG08G005630 Citrullus lanatus HOM05D004006 ORTHO05D004585 1.8e-107 392.5 190 100.0
CsaV3_6G034510 Cucumis sativus L. HOM05D004006 ORTHO05D004585 1.5e-96 356.3 191 91.6
MELO3C010605.2 Cucumis melo HOM05D004006 ORTHO05D004585 1.6e-95 352.8 191 90.6
Sed0014468 Sechium edule HOM05D004006 ORTHO05D004585 2.3e-89 332.4 191 86.9
RcHm_v2.0_Chr6g0295711 Rosa chinensis HOM05D004006 ORTHO05D004585 5.2e-62 241.5 192 65.1
Prupe.1G498100 Prunus persica HOM05D004006 ORTHO05D004585 6.8e-62 241.1 205 62.0
FAN27G3464 Fragaria x ananassa HOM05D004006 ORTHO05D004585 1.5e-61 240.0 192 65.1
Duzib093G0488 Durio zibethinus HOM05D004006 ORTHO05D004585 2.0e-61 239.6 204 65.2
FAN24G3177 Fragaria x ananassa HOM05D004006 ORTHO05D004585 3.4e-61 238.8 192 65.1
FAN20G2831 Fragaria x ananassa HOM05D004006 ORTHO05D004585 9.9e-61 237.3 192 64.6
Thecc.08G124900 Theobroma cacao HOM05D004006 ORTHO05D004585 2.9e-60 235.7 208 63.9
FvH4_2g26860 Fragaria vesca HOM05D004006 ORTHO05D004585 8.4e-60 234.2 186 65.1
MD15G1349700 Malus domestica HOM05D004006 ORTHO05D004585 1.4e-59 233.4 214 59.8
COL.COLO4_35922 Corchorus olitorius HOM05D004006 ORTHO05D004585 4.2e-59 231.9 211 62.6
Duzib116G0782 Durio zibethinus HOM05D004006 ORTHO05D004585 2.1e-58 229.6 204 60.8
Potri.002G083900 Populus trichocarpa HOM05D004006 ORTHO05D004585 3.0e-57 225.7 211 58.8
TAR628G0258 Trochodendron aralioides HOM05D004006 ORTHO05D004585 8.7e-57 224.2 195 59.5
Manes.18G077000 Manihot esculenta HOM05D004006 ORTHO05D004585 4.3e-56 221.9 211 59.2
CiPaw.06G030700 Carya illinoinensis HOM05D004006 ORTHO05D004585 9.6e-56 220.7 216 60.6
MD08G1163000 Malus domestica HOM05D004006 ORTHO05D004585 2.8e-55 219.2 211 57.3
TAR376G1087 Trochodendron aralioides HOM05D004006 ORTHO05D004585 3.4e-53 212.2 191 58.1
Cfa016015 Carpinus fangiana HOM05D004006 ORTHO05D004585 4.4e-53 211.8 205 60.0
Dinv27317 Davidia involucrata HOM05D004006 ORTHO05D004585 4.4e-53 211.8 194 58.8
Haze_00445 Corylus avellana HOM05D004006 ORTHO05D004585 5.8e-53 211.5 209 59.3
Gohir.D01G180600 Gossypium hirsutum HOM05D004006 ORTHO05D004585 1.7e-52 209.9 202 60.4
Gorai.002G222000 Gossypium raimondii HOM05D004006 ORTHO05D004585 1.7e-52 209.9 202 60.4
Nn5g28281 Nelumbo nucifera HOM05D004006 ORTHO05D004585 1.7e-52 209.9 203 57.1
GSVIVG01008871001 Vitis vinifera HOM05D004006 ORTHO05D004585 2.2e-52 209.5 178 59.0
Eucgr.F04353 Eucalyptus grandis HOM05D004006 ORTHO05D004585 2.9e-52 209.1 231 51.5
Gohir.A01G188900 Gossypium hirsutum HOM05D004006 ORTHO05D004585 5.4e-51 204.9 202 58.9
Duzib041G0805 Durio zibethinus HOM05D004006 ORTHO05D004585 1.2e-50 203.8 172 61.6
Potri.005G177600 Populus trichocarpa HOM05D004006 ORTHO05D004585 2.1e-50 203.0 200 55.5
TWI56G0850 Tripterygium wilfordii HOM05D004006 ORTHO05D004585 2.7e-50 202.6 211 54.5
Gorai.005G089800 Gossypium raimondii HOM05D004006 ORTHO05D004585 4.6e-50 201.8 215 55.8
Gohir.A02G073100 Gossypium hirsutum HOM05D004006 ORTHO05D004585 1.7e-49 199.9 215 55.8
Gorai.009G245700 Gossypium raimondii HOM05D004006 ORTHO05D004585 1.7e-49 199.9 205 57.1
Gohir.D02G080400 Gossypium hirsutum HOM05D004006 ORTHO05D004585 2.3e-49 199.5 215 54.4
TWI36G0058 Tripterygium wilfordii HOM05D004006 ORTHO05D004585 5.1e-49 198.4 220 52.3
Gohir.A05G235000 Gossypium hirsutum HOM05D004006 ORTHO05D004585 1.1e-48 197.2 205 56.1
Gohir.D05G237300 Gossypium hirsutum HOM05D004006 ORTHO05D004585 1.1e-48 197.2 205 56.6
Nn1g08787 Nelumbo nucifera HOM05D004006 ORTHO05D004585 1.6e-47 193.4 197 53.8
Cc10_g11860 Coffea canephora HOM05D004006 ORTHO05D004585 6.2e-47 191.4 210 50.0
PGR044G2543 Punica granatum HOM05D004006 ORTHO05D004585 2.4e-46 189.5 230 49.1
Hma1.2p1_0186F.1_g081800 Hydrangea macrophylla HOM05D004006 ORTHO05D004585 6.9e-46 188.0 202 50.5
CSS0040709 Camellia sinensis var. sinensis HOM05D004006 ORTHO05D004585 1.5e-45 186.8 200 54.0
Oeu050916.1 Olea europaea HOM05D004006 ORTHO05D004585 2.0e-45 186.4 197 51.8
Oeu050917.2 Olea europaea HOM05D004006 ORTHO05D004585 2.6e-45 186.0 197 51.8
CANSAT25G0779 Cannabis sativa HOM05D004006 ORTHO05D004585 3.4e-45 185.7 241 49.8
Phvul.009G124900 Phaseolus vulgaris HOM05D004006 ORTHO05D004585 1.7e-44 183.3 200 50.5
Lj7P340T24 Lonicera japonica HOM05D004006 ORTHO05D004585 2.2e-44 183.0 188 56.9
Ciclev10002301m.g Citrus clementina HOM05D004006 ORTHO05D004585 1.1e-43 180.6 225 50.2
CSS0019596 Camellia sinensis var. sinensis HOM05D004006 ORTHO05D004585 5.5e-43 178.3 209 54.1
TPR.G21067 Trifolium pratense HOM05D004006 ORTHO05D004585 7.1e-43 177.9 223 46.6
vmacro00834 Vaccinium macrocarpon HOM05D004006 ORTHO05D004585 1.6e-42 176.8 189 52.4
Lj1g0016270 Lotus japonicus HOM05D004006 ORTHO05D004585 2.1e-42 176.4 199 53.8
Manes.02G162900 Manihot esculenta HOM05D004006 ORTHO05D004585 3.5e-42 175.6 206 49.5
MSTRG.22410 Avicennia marina HOM05D004006 ORTHO05D004585 4.6e-42 175.3 191 48.7
THA.LOC104800196 Tarenaya hassleriana HOM05D004006 ORTHO05D004585 1.0e-41 174.1 211 52.6
Ca_16556_v3 Cicer arietinum L. HOM05D004006 ORTHO05D004585 5.1e-41 171.8 220 49.1
VMungo1309G2318 Vigna mungo HOM05D004006 ORTHO05D004585 8.7e-41 171.0 200 48.0
Peaxi162Scf00018g00027 Petunia axillaris HOM05D004006 ORTHO05D004585 1.1e-40 170.6 219 47.9
MSTRG.1442 Avicennia marina HOM05D004006 ORTHO05D004585 3.3e-40 169.1 187 50.3
Glyma.04G249900 Glycine max HOM05D004006 ORTHO05D004585 4.3e-40 168.7 204 50.5
CDE02G3357 Ceratophyllum demersum HOM05D004006 ORTHO05D004585 1.3e-39 167.2 193 47.7
Dinv07222 Davidia involucrata HOM05D004006 ORTHO05D004585 1.3e-39 167.2 144 59.7
THA.LOC104813655 Tarenaya hassleriana HOM05D004006 ORTHO05D004585 2.8e-39 166.0 202 53.5
CARHR022190 Cardamine hirsuta HOM05D004006 ORTHO05D004585 4.8e-39 165.2 199 50.3
MBI16_g07656_MAGBIO Magnolia biondii HOM05D004006 ORTHO05D004585 1.1e-38 164.1 177 51.4
Atru.chr13.1448 Acer truncatum HOM05D004006 ORTHO05D004585 1.8e-38 163.3 194 50.5
Atru.chr13.1472 Acer truncatum HOM05D004006 ORTHO05D004585 1.8e-38 163.3 194 50.5
Thhalv10008805m.g Eutrema salsugineum HOM05D004006 ORTHO05D004585 1.8e-38 163.3 199 48.2
Glyma.06G113000 Glycine max HOM05D004006 ORTHO05D004585 3.4e-37 159.1 204 49.5
Sp1g19380 Schrenkiella parvula HOM05D004006 ORTHO05D004585 5.8e-37 158.3 195 47.2
Medtr3g088010 Medicago truncatula HOM05D004006 ORTHO05D004585 1.3e-36 157.1 217 47.5
AL1G35020 Arabidopsis lyrata HOM05D004006 ORTHO05D004585 1.7e-36 156.8 202 48.0
Psat5g087920 Pisum sativum HOM05D004006 ORTHO05D004585 1.7e-36 156.8 210 45.2
Nitab4.5_0016080g0010 Nicotiana tabacum HOM05D004006 ORTHO05D004585 3.8e-36 155.6 210 47.1
BcaC06g34904 Brassica carinata HOM05D004006 ORTHO05D004585 6.5e-36 154.8 201 47.3
C07p21950 Brassica napus HOM05D004006 ORTHO05D004585 6.5e-36 154.8 201 47.3
BolC7t42725H Brassica oleracea HOM05D004006 ORTHO05D004585 6.5e-36 154.8 201 47.3
CDE08G0380 Ceratophyllum demersum HOM05D004006 ORTHO05D004585 6.5e-36 154.8 176 47.7
RhsimUnG0092700 Rhododendron simsii HOM05D004006 ORTHO05D004585 1.1e-35 154.1 192 45.3
Carub.0001s2127 Capsella rubella HOM05D004006 ORTHO05D004585 1.4e-35 153.7 203 47.8
AT1G21830 Arabidopsis thaliana HOM05D004006 ORTHO05D004585 1.9e-35 153.3 208 46.6
Gohir.D05G270600 Gossypium hirsutum HOM05D004006 ORTHO05D004585 1.9e-35 153.3 171 50.9
BcaC07g39124 Brassica carinata HOM05D004006 ORTHO05D004585 2.5e-35 152.9 199 46.7
A08p28790 Brassica napus HOM05D004006 ORTHO05D004585 2.5e-35 152.9 199 46.7
C08p21130 Brassica napus HOM05D004006 ORTHO05D004585 2.5e-35 152.9 199 46.7
BolC8t49750H Brassica oleracea HOM05D004006 ORTHO05D004585 2.5e-35 152.9 199 46.7
BraA08t34808Z Brassica rapa HOM05D004006 ORTHO05D004585 2.5e-35 152.9 199 46.7
Lalb_Chr08g0241451 Lupinus albus HOM05D004006 ORTHO05D004585 2.5e-35 152.9 199 46.7
Lalb_Chr23g0271011 Lupinus albus HOM05D004006 ORTHO05D004585 2.5e-35 152.9 192 47.4
Aqoxy6G00215 Aquilegia oxysepala HOM05D004006 ORTHO05D004585 3.2e-35 152.5 217 46.5
SGA_v2.0_scaffold52G18967 Striga asiatica HOM05D004006 ORTHO05D004585 4.2e-35 152.1 207 45.9
Glyma.13G079800 Glycine max HOM05D004006 ORTHO05D004585 7.1e-35 151.4 187 49.7
A07p14920 Brassica napus HOM05D004006 ORTHO05D004585 1.2e-34 150.6 201 46.8
BraA06t24881Z Brassica rapa HOM05D004006 ORTHO05D004585 1.2e-34 150.6 202 47.0
BraA07t29235Z Brassica rapa HOM05D004006 ORTHO05D004585 1.2e-34 150.6 201 46.8
A06p17910 Brassica napus HOM05D004006 ORTHO05D004585 1.6e-34 150.2 202 46.5
Nitab4.5_0000051g0220 Nicotiana tabacum HOM05D004006 ORTHO05D004585 2.1e-34 149.8 211 45.5
Gorai.009G283200 Gossypium raimondii HOM05D004006 ORTHO05D004585 2.7e-34 149.4 171 50.3
Oeu026152.1 Olea europaea HOM05D004006 ORTHO05D004585 2.7e-34 149.4 180 48.9
Actinidia21321 Actinidia chinensis HOM05D004006 ORTHO05D004585 3.5e-34 149.1 206 47.1
Oeu047951.1 Olea europaea HOM05D004006 ORTHO05D004585 3.5e-34 149.1 184 47.3
BcaB07g32181 Brassica carinata HOM05D004006 ORTHO05D004585 6.0e-34 148.3 202 46.5
BcaC05g26103 Brassica carinata HOM05D004006 ORTHO05D004585 6.0e-34 148.3 202 46.5
C05p20810 Brassica napus HOM05D004006 ORTHO05D004585 6.0e-34 148.3 202 46.5
ATR0584G004 Amborella trichopoda HOM05D004006 ORTHO05D004585 7.9e-34 147.9 192 44.8
Actinidia29465 Actinidia chinensis HOM05D004006 ORTHO05D004585 1.0e-33 147.5 198 46.5
Actinidia03470 Actinidia chinensis HOM05D004006 ORTHO05D004585 1.3e-33 147.1 165 51.5
BcaB03g14254 Brassica carinata HOM05D004006 ORTHO05D004585 1.3e-33 147.1 189 47.1
BolC5t30780H Brassica oleracea HOM05D004006 ORTHO05D004585 1.8e-33 146.7 202 46.0
Lalb_Chr10g0101721 Lupinus albus HOM05D004006 ORTHO05D004585 1.8e-33 146.7 206 43.2
PGSC0003DMG400027788 Solanum tuberosum HOM05D004006 ORTHO05D004585 1.8e-33 146.7 214 46.3
BcaB03g11881 Brassica carinata HOM05D004006 ORTHO05D004585 2.3e-33 146.4 193 46.1
Rhsim06G0103600 Rhododendron simsii HOM05D004006 ORTHO05D004585 6.7e-33 144.8 196 49.0
Migut.C01125 Erythranthe guttata HOM05D004006 ORTHO05D004585 8.7e-33 144.4 195 45.6
Hund17292 Selenicereus undatus HOM05D004006 ORTHO05D004585 1.5e-32 143.7 228 43.9
EL10Ac1g01007 Beta vulgaris HOM05D004006 ORTHO05D004585 2.5e-32 142.9 233 43.8
MSTRG.25384 Avicennia marina HOM05D004006 ORTHO05D004585 4.3e-32 142.1 193 46.6
Solyc11g013450.2 Solanum lycopersicum HOM05D004006 ORTHO05D004585 7.4e-32 141.4 216 44.9
DCAR_014087 Daucus carota HOM05D004006 ORTHO05D004585 1.6e-31 140.2 191 47.6
Glyma.14G150000 Glycine max HOM05D004006 ORTHO05D004585 2.1e-31 139.8 176 48.3
BcaB07g32179 Brassica carinata HOM05D004006 ORTHO05D004585 6.3e-31 138.3 200 45.5
arahy.Tifrunner.gnm1.ann1.CFE04G Arachis hypogaea HOM05D004006 ORTHO05D004585 1.4e-30 137.1 220 42.7
SalBow6G7056 Salvia bowleyana HOM05D004006 ORTHO05D004585 1.8e-30 136.7 168 45.8
arahy.Tifrunner.gnm1.ann1.J26PKP Arachis hypogaea HOM05D004006 ORTHO05D004585 4.1e-30 135.6 217 43.3
SGA_v2.0_scaffold24G10460 Striga asiatica HOM05D004006 ORTHO05D004585 7.6e-29 131.3 179 45.3
MBI09_g12159_MAGBIO Magnolia biondii HOM05D004006 ORTHO05D004585 1.0e-28 131.0 186 42.5
Oeu059434.1 Olea europaea HOM05D004006 ORTHO05D004585 6.5e-28 128.3 183 42.6
Migut.N03284 Erythranthe guttata HOM05D004006 ORTHO05D004585 2.5e-27 126.3 166 44.6
PSO170G2295 Papaver somniferum HOM05D004006 ORTHO05D004585 7.9e-26 121.3 260 38.1
PSO528G0204 Papaver somniferum HOM05D004006 ORTHO05D004585 1.5e-24 117.1 250 38.0
SalBow7G3581 Salvia bowleyana HOM05D004006 ORTHO05D004585 3.3e-24 115.9 175 39.4
SGA_v2.0_scaffold25G11123 Striga asiatica HOM05D004006 ORTHO05D004585 2.2e-23 113.2 183 37.2
Lsat_1_v5_gn_5_101481 Lactuca sativa HOM05D004006 ORTHO05D004585 4.8e-23 112.1 184 40.2
Gohir.A05G268750 Gossypium hirsutum HOM05D004006 ORTHO05D004585 1.4e-22 110.5 121 52.9
HanXRQChr04g0125261 Helianthus annuus HOM05D004006 ORTHO05D004585 1.4e-22 110.5 188 41.0
CDE06G0283 Ceratophyllum demersum HOM05D004006 ORTHO05D004585 1.8e-22 110.2 183 39.3
HPP92_011945 Vanilla planifolia HOM05D004006 ORTHO05D004585 6.9e-22 108.2 198 35.9
Sabra02G0065700 Salix brachista HOM05D004006 ORTHO05D004585 2.6e-21 106.3 99 55.6
Hund26811 Selenicereus undatus HOM05D004006 ORTHO05D004585 2.6e-21 106.3 177 40.1
Cpa.g.sc64.85 Carica papaya HOM05D004006 ORTHO05D004585 4.5e-21 105.5 120 51.7
CDE08G1629 Ceratophyllum demersum HOM05D004006 ORTHO05D004585 1.3e-20 104.0 172 37.8
Sabra05G0134100 Salix brachista HOM05D004006 ORTHO05D004585 2.2e-20 103.2 96 55.2
THA.LOC104817318 Tarenaya hassleriana HOM05D004006 ORTHO05D004585 1.1e-19 100.9 204 38.2
Sopen11g008440 Solanum pennellii HOM05D004006 ORTHO05D004585 1.4e-19 100.5 150 43.3
Os04g0690500 Oryza sativa ssp. japonica HOM05D004006 ORTHO05D004585 3.2e-19 99.4 216 35.6
THA.LOC104806821 Tarenaya hassleriana HOM05D004006 ORTHO05D004585 4.2e-19 99.0 194 36.6
CARHR035970 Cardamine hirsuta HOM05D004006 ORTHO05D004585 9.4e-19 97.8 193 37.3
Carub.0001s3524 Capsella rubella HOM05D004006 ORTHO05D004585 1.6e-18 97.1 204 34.8
BcaC08g42859 Brassica carinata HOM05D004006 ORTHO05D004585 6.7e-17 91.7 175 40.0
A10p07490 Brassica napus HOM05D004006 ORTHO05D004585 6.7e-17 91.7 175 38.3
C06p00700 Brassica napus HOM05D004006 ORTHO05D004585 6.7e-17 91.7 175 40.0
BraSC36t46058Z Brassica rapa HOM05D004006 ORTHO05D004585 6.7e-17 91.7 175 38.3
Thhalv10011817m.g Eutrema salsugineum HOM05D004006 ORTHO05D004585 6.7e-17 91.7 159 42.1
BolC6t35208H Brassica oleracea HOM05D004006 ORTHO05D004585 8.8e-17 91.3 175 39.4
AL1G52380 Arabidopsis lyrata HOM05D004006 ORTHO05D004585 4.3e-16 89.0 195 35.9
VMungo0647G0089 Vigna mungo HOM05D004006 ORTHO05D004585 5.7e-16 88.6 103 48.5
AUR62014339 Chenopodium quinoa HOM05D004006 ORTHO05D004585 6.3e-15 85.1 127 45.7
Sp1g33590 Schrenkiella parvula HOM05D004006 ORTHO05D004585 1.8e-14 83.6 172 34.3
Lj4C625T3 Lonicera japonica HOM05D004006 ORTHO05D004585 2.4e-14 83.2 85 55.3
Aa31LG7G5780 Aethionema arabicum HOM05D004006 ORTHO05D004585 3.4e-13 79.3 163 33.1
unitig_46.g18107 Utricularia gibba HOM05D004006 ORTHO05D004585 3.4e-13 79.3 156 35.3
AT1G44608 Arabidopsis thaliana HOM05D004006 ORTHO05D004585 7.7e-13 78.2 173 34.1
HPP92_011964 Vanilla planifolia HOM05D004006 ORTHO05D004585 1.7e-12 77.0 191 30.9
PSO017G3194 Papaver somniferum HOM05D004006 ORTHO05D004585 1.9e-11 73.6 240 29.2
Phvul.008G163001 Phaseolus vulgaris HOM05D004006 ORTHO05D004585 3.6e-10 69.3 95 45.3
Aa31LG6G9320 Aethionema arabicum HOM05D004006 ORTHO05D004585 2.0e-08 63.5 163 34.4
VMungo0647G1885 Vigna mungo HOM05D004006 ORTHO05D004585 3.3e-08 62.8 82 47.6
CDE12G0877 Ceratophyllum demersum HOM05D004006 ORTHO05D004585 4.4e-08 62.4 153 32.7
Ah.05g171110 Amaranthus hybridus HOM05D004006 ORTHO05D004585 1.1e-06 57.8 75 46.7
Zm00001eb076410 Zea mays HOM05D004006 ORTHO05D004585 2.4e-06 56.6 92 34.8


User provided reference genes

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