Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG08G005430 Citrullus lanatus HOM05D006390 ORTHO05D007899 4.6e-43 177.6 95 100.0
ClCG08G009800 Citrullus lanatus HOM05D006390 ORTHO05D007899 2.3e-18 95.5 55 85.5
ClCG08G009850 Citrullus lanatus HOM05D006390 ORTHO05D007899 2.3e-18 95.5 55 85.5
MELO3C011488.2 Cucumis melo HOM05D006390 ORTHO05D007899 3.0e-18 95.1 55 87.3
CsaV3_6G031930 Cucumis sativus L. HOM05D006390 ORTHO05D007899 3.0e-18 95.1 55 87.3
Sed0001574 Sechium edule HOM05D006390 ORTHO05D007899 1.3e-16 89.7 55 80.0
Lalb_Chr08g0244791 Lupinus albus HOM05D006390 ORTHO05D007899 1.0e-13 80.1 51 74.5
Dinv22938 Davidia involucrata HOM05D006390 ORTHO05D007899 1.7e-13 79.3 51 70.6
AUR62020590 Chenopodium quinoa HOM05D006390 ORTHO05D007899 2.9e-13 78.6 79 58.2
Ca_15833_v3 Cicer arietinum L. HOM05D006390 ORTHO05D007899 3.8e-13 78.2 51 72.5
Migut.A00074 Erythranthe guttata HOM05D006390 ORTHO05D007899 6.5e-13 77.4 71 59.2
Lj1g0012601 Lotus japonicus HOM05D006390 ORTHO05D007899 6.5e-13 77.4 51 74.5
QL02p017058 Quercus lobata HOM05D006390 ORTHO05D007899 6.5e-13 77.4 64 59.4
Prupe.1G403800 Prunus persica HOM05D006390 ORTHO05D007899 8.6e-13 77.0 49 75.5
Gorai.001G019900 Gossypium raimondii HOM05D006390 ORTHO05D007899 1.1e-12 76.6 48 72.9
GSVIVG01035473001 Vitis vinifera HOM05D006390 ORTHO05D007899 1.1e-12 76.6 70 55.7
AUR62009077 Chenopodium quinoa HOM05D006390 ORTHO05D007899 1.5e-12 76.3 79 57.0
Hma1.2p1_0836F.1_g225960 Hydrangea macrophylla HOM05D006390 ORTHO05D007899 1.5e-12 76.3 75 56.0
vmacro04145 Vaccinium macrocarpon HOM05D006390 ORTHO05D007899 1.5e-12 76.3 51 70.6
Cfa017867 Carpinus fangiana HOM05D006390 ORTHO05D007899 1.9e-12 75.9 49 69.4
Haze_18300 Corylus avellana HOM05D006390 ORTHO05D007899 1.9e-12 75.9 49 69.4
Rhsim13G0219900 Rhododendron simsii HOM05D006390 ORTHO05D007899 1.9e-12 75.9 68 60.3
Thecc.09G063800 Theobroma cacao HOM05D006390 ORTHO05D007899 1.9e-12 75.9 55 67.3
Glyma.06G056200 Glycine max HOM05D006390 ORTHO05D007899 2.5e-12 75.5 49 71.4
RcHm_v2.0_Chr6g0311911 Rosa chinensis HOM05D006390 ORTHO05D007899 2.5e-12 75.5 49 73.5
Sabra06G0170200 Salix brachista HOM05D006390 ORTHO05D007899 2.5e-12 75.5 53 73.6
Lj7A221T35 Lonicera japonica HOM05D006390 ORTHO05D007899 3.2e-12 75.1 51 66.7
MD15G1049500 Malus domestica HOM05D006390 ORTHO05D007899 3.2e-12 75.1 74 56.8
PGR031G3115 Punica granatum HOM05D006390 ORTHO05D007899 3.2e-12 75.1 51 68.6
ClCG10G006160 Citrullus lanatus HOM05D006390 ORTHO05D007899 4.2e-12 74.7 50 80.0
Nn8g38656 Nelumbo nucifera HOM05D006390 ORTHO05D007899 5.5e-12 74.3 51 64.7
Peaxi162Scf00486g01019 Petunia axillaris HOM05D006390 ORTHO05D007899 5.5e-12 74.3 49 71.4
TAR383G0302 Trochodendron aralioides HOM05D006390 ORTHO05D007899 5.5e-12 74.3 51 66.7
EL10Ac2g03777 Beta vulgaris HOM05D006390 ORTHO05D007899 7.2e-12 73.9 68 55.9
CSS0002038 Camellia sinensis var. sinensis HOM05D006390 ORTHO05D007899 7.2e-12 73.9 71 56.3
CANSAT25G0657 Cannabis sativa HOM05D006390 ORTHO05D007899 7.2e-12 73.9 70 55.7
ECA234G3179 Erigeron canadensis HOM05D006390 ORTHO05D007899 7.2e-12 73.9 79 53.2
Gohir.D07G019200 Gossypium hirsutum HOM05D006390 ORTHO05D007899 7.2e-12 73.9 48 70.8
HanXRQChr10g0305261 Helianthus annuus HOM05D006390 ORTHO05D007899 7.2e-12 73.9 51 64.7
Manes.16G085900 Manihot esculenta HOM05D006390 ORTHO05D007899 7.2e-12 73.9 49 69.4
Sc09g0010120 Simmondsia chinensis HOM05D006390 ORTHO05D007899 7.2e-12 73.9 73 54.8
Actinidia25689 Actinidia chinensis HOM05D006390 ORTHO05D007899 9.5e-12 73.6 69 60.9
Aa31LG1G13500 Aethionema arabicum HOM05D006390 ORTHO05D007899 9.5e-12 73.6 65 58.5
Hund19420 Selenicereus undatus HOM05D006390 ORTHO05D007899 9.5e-12 73.6 68 55.9
CiPaw.15G091600 Carya illinoinensis HOM05D006390 ORTHO05D007899 1.2e-11 73.2 81 55.6
COL.COLO4_21143 Corchorus olitorius HOM05D006390 ORTHO05D007899 1.2e-11 73.2 43 83.7
FAN20G0978 Fragaria x ananassa HOM05D006390 ORTHO05D007899 1.2e-11 73.2 46 76.1
FAN27G3252 Fragaria x ananassa HOM05D006390 ORTHO05D007899 1.2e-11 73.2 46 76.1
Glyma.04G056000 Glycine max HOM05D006390 ORTHO05D007899 1.2e-11 73.2 49 71.4
Manes.03G053300 Manihot esculenta HOM05D006390 ORTHO05D007899 1.2e-11 73.2 51 66.7
Potri.006G220400 Populus trichocarpa HOM05D006390 ORTHO05D007899 1.2e-11 73.2 51 72.5
Duzib187G1133 Durio zibethinus HOM05D006390 ORTHO05D007899 1.6e-11 72.8 48 68.8
Atru.chr7.1843 Acer truncatum HOM05D006390 ORTHO05D007899 2.8e-11 72.0 43 81.4
Psat5g030440 Pisum sativum HOM05D006390 ORTHO05D007899 2.8e-11 72.0 52 71.2
Gohir.A07G019400 Gossypium hirsutum HOM05D006390 ORTHO05D007899 3.6e-11 71.6 48 68.8
Medtr3g105100 Medicago truncatula HOM05D006390 ORTHO05D007899 3.6e-11 71.6 41 85.4
Phvul.009G082300 Phaseolus vulgaris HOM05D006390 ORTHO05D007899 3.6e-11 71.6 46 69.6
HPP92_009411 Vanilla planifolia HOM05D006390 ORTHO05D007899 3.6e-11 71.6 49 69.4
Lsat_1_v5_gn_5_79481 Lactuca sativa HOM05D006390 ORTHO05D007899 4.7e-11 71.2 79 51.9
PSO063G4734 Papaver somniferum HOM05D006390 ORTHO05D007899 4.7e-11 71.2 73 52.1
TWI63G0478 Tripterygium wilfordii HOM05D006390 ORTHO05D007899 4.7e-11 71.2 57 61.4
FAN24G3066 Fragaria x ananassa HOM05D006390 ORTHO05D007899 6.1e-11 70.9 107 41.1
Oeu022304.1 Olea europaea HOM05D006390 ORTHO05D007899 6.1e-11 70.9 41 78.0
PGSC0003DMG402018816 Solanum tuberosum HOM05D006390 ORTHO05D007899 6.1e-11 70.9 49 69.4
PSO421G0578 Papaver somniferum HOM05D006390 ORTHO05D007899 8.0e-11 70.5 73 52.1
Solyc08g061630.3 Solanum lycopersicum HOM05D006390 ORTHO05D007899 8.0e-11 70.5 72 52.8
Sopen08g017090 Solanum pennellii HOM05D006390 ORTHO05D007899 8.0e-11 70.5 72 52.8
AL6G32880 Arabidopsis lyrata HOM05D006390 ORTHO05D007899 1.0e-10 70.1 45 73.3
AT5G21920 Arabidopsis thaliana HOM05D006390 ORTHO05D007899 1.0e-10 70.1 45 73.3
Carub.0006s1956 Capsella rubella HOM05D006390 ORTHO05D007899 1.0e-10 70.1 45 73.3
Ciclev10009264m.g Citrus clementina HOM05D006390 ORTHO05D007899 1.0e-10 70.1 51 64.7
Cc08_g01110 Coffea canephora HOM05D006390 ORTHO05D007899 1.0e-10 70.1 74 54.1
SGA_v2.0_scaffold64G21890 Striga asiatica HOM05D006390 ORTHO05D007899 1.0e-10 70.1 55 60.0
CAN.G567.81 Capsicum annuum HOM05D006390 ORTHO05D007899 1.4e-10 69.7 49 67.3
CARHR191620 Cardamine hirsuta HOM05D006390 ORTHO05D007899 1.8e-10 69.3 45 71.1
Thhalv10014336m.g Eutrema salsugineum HOM05D006390 ORTHO05D007899 1.8e-10 69.3 45 71.1
MBI13_g42819_MAGBIO Magnolia biondii HOM05D006390 ORTHO05D007899 1.8e-10 69.3 44 70.5
MD08G1071700 Malus domestica HOM05D006390 ORTHO05D007899 1.8e-10 69.3 51 68.6
SGA_v2.0_scaffold20G09157 Striga asiatica HOM05D006390 ORTHO05D007899 1.8e-10 69.3 71 50.7
FvH4_2g30940 Fragaria vesca HOM05D006390 ORTHO05D007899 2.3e-10 68.9 105 41.9
Lsat_1_v5_gn_7_58320 Lactuca sativa HOM05D006390 ORTHO05D007899 2.3e-10 68.9 52 67.3
Sp6g23270 Schrenkiella parvula HOM05D006390 ORTHO05D007899 2.3e-10 68.9 45 71.1
Aqoxy7G01043 Aquilegia oxysepala HOM05D006390 ORTHO05D007899 3.0e-10 68.6 45 66.7
A10p18800 Brassica napus HOM05D006390 ORTHO05D007899 3.0e-10 68.6 45 71.1
BraA10t43960Z Brassica rapa HOM05D006390 ORTHO05D007899 3.0e-10 68.6 45 71.1
Cpa.g.sc126.20 Carica papaya HOM05D006390 ORTHO05D007899 3.0e-10 68.6 80 51.2
Eucgr.C00730 Eucalyptus grandis HOM05D006390 ORTHO05D007899 3.0e-10 68.6 44 81.8
VMungo1309G2672 Vigna mungo HOM05D006390 ORTHO05D007899 3.0e-10 68.6 42 73.8
Nitab4.5_0008422g0020 Nicotiana tabacum HOM05D006390 ORTHO05D007899 5.2e-10 67.8 55 63.6
ATR0598G016 Amborella trichopoda HOM05D006390 ORTHO05D007899 6.8e-10 67.4 73 49.3
Aqoxy7G01041 Aquilegia oxysepala HOM05D006390 ORTHO05D007899 6.8e-10 67.4 45 66.7
C09p54820 Brassica napus HOM05D006390 ORTHO05D007899 6.8e-10 67.4 45 71.1
BolC9t58342H Brassica oleracea HOM05D006390 ORTHO05D007899 6.8e-10 67.4 45 71.1
Nitab4.5_0000446g0130 Nicotiana tabacum HOM05D006390 ORTHO05D007899 6.8e-10 67.4 49 67.3
SalBow1G6552 Salvia bowleyana HOM05D006390 ORTHO05D007899 6.8e-10 67.4 72 50.0
unitig_748.g8236 Utricularia gibba HOM05D006390 ORTHO05D007899 8.8e-10 67.0 56 57.1
arahy.Tifrunner.gnm1.ann1.J6KHV2 Arachis hypogaea HOM05D006390 ORTHO05D007899 1.2e-09 66.6 43 79.1
arahy.Tifrunner.gnm1.ann1.T21GIU Arachis hypogaea HOM05D006390 ORTHO05D007899 1.2e-09 66.6 43 79.1
THA.LOC104799578 Tarenaya hassleriana HOM05D006390 ORTHO05D007899 1.2e-09 66.6 43 69.8
unitig_4.g30333 Utricularia gibba HOM05D006390 ORTHO05D007899 2.6e-09 65.5 40 72.5
BcaB01g04755 Brassica carinata HOM05D006390 ORTHO05D007899 4.4e-09 64.7 45 66.7
A03p10460 Brassica napus HOM05D006390 ORTHO05D007899 4.4e-09 64.7 45 66.7
C03p12030 Brassica napus HOM05D006390 ORTHO05D007899 4.4e-09 64.7 45 66.7
BolC3t13674H Brassica oleracea HOM05D006390 ORTHO05D007899 4.4e-09 64.7 45 66.7
BraA03t10358Z Brassica rapa HOM05D006390 ORTHO05D007899 4.4e-09 64.7 45 66.7
SEGI_09813 Sequoiadendron giganteum HOM05D006390 ORTHO05D007899 4.4e-09 64.7 49 61.2
SEGI_33134 Sequoiadendron giganteum HOM05D006390 ORTHO05D007899 4.4e-09 64.7 49 61.2
BcaB08g36469 Brassica carinata HOM05D006390 ORTHO05D007899 2.2e-08 62.4 43 69.8
DCAR_001232 Daucus carota HOM05D006390 ORTHO05D007899 3.7e-08 61.6 37 78.4
Zm00001eb005830 Zea mays HOM05D006390 ORTHO05D007899 6.3e-08 60.8 50 58.0
CBR_g19741 Chara braunii HOM05D006390 ORTHO05D007899 8.3e-08 60.5 51 54.9
Os03g0178200 Oryza sativa ssp. japonica HOM05D006390 ORTHO05D007899 1.1e-07 60.1 43 65.1
AagrBONN_evm.TU.Sc2ySwM_362.1274 Anthoceros agrestis HOM05D006390 ORTHO05D007899 5.4e-07 57.8 42 61.9
Pp3c10_13690 Physcomitrium patens HOM05D006390 ORTHO05D007899 7.0e-07 57.4 45 55.6
Cre12.g557050 Chlamydomonas reinhardtii HOM05D006390 ORTHO05D007899 1.2e-06 56.6 38 65.8
SMO172G0039 Selaginella moellendorffii HOM05D006390 ORTHO05D007899 2.0e-06 55.8 38 63.2
Pp3c3_30150 Physcomitrium patens HOM05D006390 ORTHO05D007899 2.7e-06 55.5 45 53.3


User provided reference genes

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