Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG08G005220 Citrullus lanatus HOM05D006108 ORTHO05D007605 3.1e-96 355.1 181 100.0
MELO3C011555.2 Cucumis melo HOM05D006108 ORTHO05D007605 9.8e-50 200.7 154 73.4
CsaV3_6G003400 Cucumis sativus L. HOM05D006108 ORTHO05D007605 1.7e-49 199.9 183 61.7
Sed0027931 Sechium edule HOM05D006108 ORTHO05D007605 9.2e-32 141.0 131 63.4
Sed0000256 Sechium edule HOM05D006108 ORTHO05D007605 2.3e-27 126.3 181 49.7
Hund05757 Selenicereus undatus HOM05D006108 ORTHO05D007605 1.6e-12 77.0 72 55.6
Glyma.01G082600 Glycine max HOM05D006108 ORTHO05D007605 6.2e-12 75.1 62 59.7
HanXRQChr02g0058721 Helianthus annuus HOM05D006108 ORTHO05D007605 6.2e-12 75.1 70 55.7
Lsat_1_v5_gn_8_39200 Lactuca sativa HOM05D006108 ORTHO05D007605 8.1e-12 74.7 59 61.0
Phvul.003G034700 Phaseolus vulgaris HOM05D006108 ORTHO05D007605 8.1e-12 74.7 62 59.7
Ciclev10033455m.g Citrus clementina HOM05D006108 ORTHO05D007605 1.4e-11 73.9 83 51.8
ECA233G5877 Erigeron canadensis HOM05D006108 ORTHO05D007605 5.2e-11 72.0 49 65.3
Duzib248G0641 Durio zibethinus HOM05D006108 ORTHO05D007605 1.5e-10 70.5 77 49.4
Prupe.1G308800 Prunus persica HOM05D006108 ORTHO05D007605 2.6e-10 69.7 75 46.7
Gohir.A12G168100 Gossypium hirsutum HOM05D006108 ORTHO05D007605 4.4e-10 68.9 64 54.7
Gorai.008G184200 Gossypium raimondii HOM05D006108 ORTHO05D007605 4.4e-10 68.9 64 54.7
Migut.L01077 Erythranthe guttata HOM05D006108 ORTHO05D007605 5.8e-10 68.6 73 46.6
COL.COLO4_07905 Corchorus olitorius HOM05D001580 ORTHO05D001517 7.6e-10 68.2 71 53.5
TPR.G38355 Trifolium pratense HOM05D006108 ORTHO05D007605 7.6e-10 68.2 82 47.6
Dinv04481 Davidia involucrata HOM05D001580 ORTHO05D001517 9.9e-10 67.8 71 52.1
Thhalv10005176m.g Eutrema salsugineum HOM05D006108 ORTHO05D007605 9.9e-10 67.8 101 37.6
QL01p043861 Quercus lobata HOM05D006108 ORTHO05D007605 9.9e-10 67.8 74 50.0
TWI79G0681 Tripterygium wilfordii HOM05D006108 ORTHO05D007605 9.9e-10 67.8 73 46.6
Cpa.g.sc1.185 Carica papaya HOM05D006108 ORTHO05D007605 1.3e-09 67.4 60 56.7
MD13G1043700 Malus domestica HOM05D006108 ORTHO05D007605 1.3e-09 67.4 73 45.2
Medtr5g055190 Medicago truncatula HOM05D006108 ORTHO05D007605 1.3e-09 67.4 89 46.1
PSO017G5628 Papaver somniferum HOM05D006108 ORTHO05D007605 1.3e-09 67.4 70 51.4
Dinv09807 Davidia involucrata HOM05D006108 ORTHO05D007605 1.7e-09 67.0 73 49.3
Manes.14G100500 Manihot esculenta HOM05D006108 ORTHO05D007605 1.7e-09 67.0 83 43.4
Rhsim09G0109500 Rhododendron simsii HOM05D006290 ORTHO05D007734 1.7e-09 67.0 56 62.5
CSS0049683 Camellia sinensis var. sinensis HOM05D006108 ORTHO05D007605 2.2e-09 66.6 72 51.4
Gohir.D12G171700 Gossypium hirsutum HOM05D006108 ORTHO05D007605 2.2e-09 66.6 64 54.7
THA.LOC104824033 Tarenaya hassleriana HOM05D006108 ORTHO05D007605 2.2e-09 66.6 55 58.2
Psat2g097920 Pisum sativum HOM05D006108 ORTHO05D007605 2.9e-09 66.2 84 46.4
RcHm_v2.0_Chr4g0435471 Rosa chinensis HOM05D006108 ORTHO05D007605 2.9e-09 66.2 61 55.7
CAN.G388.38 Capsicum annuum HOM05D006108 ORTHO05D007605 3.8e-09 65.9 56 58.9
Lalb_Chr10g0099931 Lupinus albus HOM05D006108 ORTHO05D007605 3.8e-09 65.9 104 41.3
DCAR_026728 Daucus carota HOM05D006108 ORTHO05D007605 4.9e-09 65.5 83 44.6
BcaC06g33947 Brassica carinata HOM05D006108 ORTHO05D007605 8.4e-09 64.7 72 43.1
FvH4_5g12320 Fragaria vesca HOM05D006108 ORTHO05D007605 8.4e-09 64.7 74 47.3
FAN13G1808 Fragaria x ananassa HOM05D006108 ORTHO05D007605 8.4e-09 64.7 74 47.3
FAN18G0723 Fragaria x ananassa HOM05D006108 ORTHO05D007605 8.4e-09 64.7 74 47.3
FAN18G1336 Fragaria x ananassa HOM05D006108 ORTHO05D007605 8.4e-09 64.7 74 47.3
Manes.06G070100 Manihot esculenta HOM05D006108 ORTHO05D007605 8.4e-09 64.7 72 43.1
Nitab4.5_0003285g0040 Nicotiana tabacum HOM05D006108 ORTHO05D007605 8.4e-09 64.7 57 54.4
RcHm_v2.0_Chr7g0185241 Rosa chinensis HOM05D006108 ORTHO05D007605 8.4e-09 64.7 74 47.3
TWI31G1391 Tripterygium wilfordii HOM05D006108 ORTHO05D007605 8.4e-09 64.7 83 44.6
Cc11_g10300 Coffea canephora HOM05D006108 ORTHO05D007605 1.1e-08 64.3 92 45.7
Sc14g0007540 Simmondsia chinensis HOM05D006108 ORTHO05D007605 1.1e-08 64.3 61 54.1
A06p42440 Brassica napus HOM05D006108 ORTHO05D007605 1.4e-08 63.9 85 41.2
BraA06t27159Z Brassica rapa HOM05D006108 ORTHO05D007605 1.4e-08 63.9 85 41.2
Carub.0005s0368 Capsella rubella HOM05D006108 ORTHO05D007605 1.4e-08 63.9 90 37.8
Eucgr.B03028 Eucalyptus grandis HOM05D006108 ORTHO05D007605 1.4e-08 63.9 92 37.0
Potri.008G119200 Populus trichocarpa HOM05D006108 ORTHO05D007605 1.4e-08 63.9 71 45.1
TAR371G1266 Trochodendron aralioides HOM05D006108 ORTHO05D007605 1.4e-08 63.9 72 48.6
BcaB07g30252 Brassica carinata HOM05D006108 ORTHO05D007605 1.9e-08 63.5 72 40.3
BcaC03g17291 Brassica carinata HOM05D006108 ORTHO05D007605 1.9e-08 63.5 72 41.7
C02p52370 Brassica napus HOM05D006108 ORTHO05D007605 1.9e-08 63.5 72 41.7
BolC2t11319H Brassica oleracea HOM05D006108 ORTHO05D007605 1.9e-08 63.5 72 41.7
CiPaw.15G083500 Carya illinoinensis HOM05D006108 ORTHO05D007605 1.9e-08 63.5 64 50.0
Sopen05g012490 Solanum pennellii HOM05D006108 ORTHO05D007605 1.9e-08 63.5 69 47.8
Atru.chr9.818 Acer truncatum HOM05D006108 ORTHO05D007605 2.4e-08 63.2 72 48.6
arahy.Tifrunner.gnm1.ann1.384K0G Arachis hypogaea HOM05D006108 ORTHO05D007605 2.4e-08 63.2 55 56.4
C07p34870 Brassica napus HOM05D006108 ORTHO05D007605 2.4e-08 63.2 72 43.1
Lj2g0013090 Lotus japonicus HOM05D006108 ORTHO05D007605 2.4e-08 63.2 84 45.2
Nitab4.5_0001914g0010 Nicotiana tabacum HOM05D006108 ORTHO05D007605 2.4e-08 63.2 70 50.0
Prupe.5G220300 Prunus persica HOM05D006108 ORTHO05D007605 2.4e-08 63.2 92 42.4
Os09g0408550 Oryza sativa ssp. japonica HOM05D006108 ORTHO05D007605 3.2e-08 62.8 63 50.8
Sp2g15090 Schrenkiella parvula HOM05D006108 ORTHO05D007605 3.2e-08 62.8 95 37.9
MD16G1044500 Malus domestica HOM05D006108 ORTHO05D007605 4.2e-08 62.4 73 41.1
Oeu041896.1 Olea europaea HOM05D006108 ORTHO05D007605 4.2e-08 62.4 71 49.3
A02p34100 Brassica napus HOM05D006108 ORTHO05D007605 5.4e-08 62.0 90 36.7
BolC7t44019H Brassica oleracea HOM05D006108 ORTHO05D007605 5.4e-08 62.0 72 41.7
BraA02t08427Z Brassica rapa HOM05D006108 ORTHO05D007605 5.4e-08 62.0 90 36.7
PGR102G2516 Punica granatum HOM05D006108 ORTHO05D007605 7.1e-08 61.6 73 43.8
VMungo0464G0155 Vigna mungo HOM05D006108 ORTHO05D007605 7.1e-08 61.6 85 41.2
FAN07G1587 Fragaria x ananassa HOM05D006108 ORTHO05D007605 9.3e-08 61.2 62 48.4
FAN22G0059 Fragaria x ananassa HOM05D006108 ORTHO05D007605 9.3e-08 61.2 62 48.4
Rhsim12G0143800 Rhododendron simsii HOM05D006108 ORTHO05D007605 9.3e-08 61.2 75 44.0
GSVIVG01008271001 Vitis vinifera HOM05D006108 ORTHO05D007605 9.3e-08 61.2 84 42.9
FAN08G0393 Fragaria x ananassa HOM05D006108 ORTHO05D007605 1.2e-07 60.8 74 44.6
Manes.05G140027 Manihot esculenta HOM05D006108 ORTHO05D007605 1.2e-07 60.8 79 44.3
QL10p025064 Quercus lobata HOM05D006108 ORTHO05D007605 1.2e-07 60.8 84 44.0
Sabra08G0090500 Salix brachista HOM05D006108 ORTHO05D007605 1.2e-07 60.8 71 43.7
Thecc.03G033400 Theobroma cacao HOM05D006108 ORTHO05D007605 1.2e-07 60.8 72 48.6
AL5G14490 Arabidopsis lyrata HOM05D006108 ORTHO05D007605 2.1e-07 60.1 102 33.3
CARHR146800 Cardamine hirsuta HOM05D006108 ORTHO05D007605 2.7e-07 59.7 87 36.8
ClCG04G011190 Citrullus lanatus HOM05D006108 ORTHO05D007605 2.7e-07 59.7 52 55.8
CsaV3_1G006560 Cucumis sativus L. HOM05D006108 ORTHO05D007605 2.7e-07 59.7 62 50.0
AT3G25855 Arabidopsis thaliana HOM05D006108 ORTHO05D007605 4.6e-07 58.9 72 37.5
arahy.Tifrunner.gnm1.ann1.1V8BDZ Arachis hypogaea HOM05D006108 ORTHO05D007605 4.6e-07 58.9 68 47.1
arahy.Tifrunner.gnm1.ann1.L19XPP Arachis hypogaea HOM05D006108 ORTHO05D007605 4.6e-07 58.9 68 47.1
CiPaw.15G129300 Carya illinoinensis HOM05D006108 ORTHO05D007605 4.6e-07 58.9 60 50.0
Glyma.07G090500 Glycine max HOM05D006108 ORTHO05D007605 4.6e-07 58.9 86 39.5
Glyma.09G185400 Glycine max HOM05D006108 ORTHO05D007605 4.6e-07 58.9 86 37.2
MD06G1214900 Malus domestica HOM05D006108 ORTHO05D007605 4.6e-07 58.9 70 47.1
Gohir.D09G173100 Gossypium hirsutum HOM05D006108 ORTHO05D007605 6.0e-07 58.5 86 41.9
MD14G1225800 Malus domestica HOM05D006108 ORTHO05D007605 6.0e-07 58.5 80 45.0
Oeu008040.1 Olea europaea HOM05D006108 ORTHO05D007605 6.0e-07 58.5 58 51.7
Phvul.004G158700 Phaseolus vulgaris HOM05D006108 ORTHO05D007605 6.0e-07 58.5 83 39.8
Actinidia35084 Actinidia chinensis HOM05D006108 ORTHO05D007605 7.8e-07 58.2 59 50.8
Gohir.A09G177600 Gossypium hirsutum HOM05D006108 ORTHO05D007605 7.8e-07 58.2 103 38.8
Gohir.A09G047400 Gossypium hirsutum HOM05D006108 ORTHO05D007605 1.0e-06 57.8 86 39.5
Gohir.D09G048600 Gossypium hirsutum HOM05D006108 ORTHO05D007605 1.0e-06 57.8 86 39.5
Gorai.006G061500 Gossypium raimondii HOM05D006108 ORTHO05D007605 1.0e-06 57.8 86 39.5
Gorai.006G195000 Gossypium raimondii HOM05D006108 ORTHO05D007605 1.0e-06 57.8 103 38.8
Nn4g23806 Nelumbo nucifera HOM05D006108 ORTHO05D007605 1.0e-06 57.8 72 41.7
Sed0021850 Sechium edule HOM05D006108 ORTHO05D007605 1.0e-06 57.8 62 50.0
Duzib084G1067 Durio zibethinus HOM05D006108 ORTHO05D007605 1.3e-06 57.4 103 36.9
Lj2g0017619 Lotus japonicus HOM05D006108 ORTHO05D007605 1.3e-06 57.4 95 37.9
Nn3g17803 Nelumbo nucifera HOM05D006108 ORTHO05D007605 1.3e-06 57.4 61 44.3
TPR.G35239 Trifolium pratense HOM05D006108 ORTHO05D007605 1.3e-06 57.4 86 40.7
Ciclev10022919m.g Citrus clementina HOM05D006108 ORTHO05D007605 1.7e-06 57.0 72 45.8
PGSC0003DMG400010902 Solanum tuberosum HOM05D006108 ORTHO05D007605 1.7e-06 57.0 56 51.8
Zm00001eb099300 Zea mays HOM05D006108 ORTHO05D007605 1.7e-06 57.0 73 47.9
BcaC06g31111 Brassica carinata HOM05D006108 ORTHO05D007605 2.3e-06 56.6 90 36.7
Eucgr.B00718 Eucalyptus grandis HOM05D006108 ORTHO05D007605 3.0e-06 56.2 99 38.4
HPP92_026959 Vanilla planifolia HOM05D006108 ORTHO05D007605 3.0e-06 56.2 47 53.2
Psat6g222560 Pisum sativum HOM05D006108 ORTHO05D007605 5.1e-06 55.5 95 36.8
Cfa019791 Carpinus fangiana HOM05D006108 ORTHO05D007605 8.7e-06 54.7 72 45.8
FAN12G0874 Fragaria x ananassa HOM05D006108 ORTHO05D007605 8.7e-06 54.7 54 48.1


User provided reference genes

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