Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG08G005060 Citrullus lanatus HOM05D003653 ORTHO05D004249 0.0e+00 1312.4 682 100.0
CsaV3_5G037140 Cucumis sativus L. HOM05D003653 ORTHO05D004249 2.1e-262 909.1 699 74.1
MELO3C022888.2 Cucumis melo HOM05D003653 ORTHO05D004249 1.3e-259 899.8 699 73.8
Sed0017256 Sechium edule HOM05D003653 ORTHO05D004249 1.3e-256 889.8 700 73.0
GSVIVG01015003001 Vitis vinifera HOM05D003653 ORTHO05D004249 1.7e-219 766.5 703 62.6
QL02p096254 Quercus lobata HOM05D003653 ORTHO05D004249 5.4e-218 761.5 703 62.7
Prupe.7G190900 Prunus persica HOM05D003653 ORTHO05D004249 3.5e-217 758.8 704 63.1
Cfa000655 Carpinus fangiana HOM05D003653 ORTHO05D004249 3.0e-216 755.7 702 62.7
Thecc.09G069200 Theobroma cacao HOM05D003653 ORTHO05D004249 5.1e-216 755.0 703 62.0
QL02p096361 Quercus lobata HOM05D003653 ORTHO05D004249 6.6e-216 754.6 703 62.4
TWI32G0371 Tripterygium wilfordii HOM05D003653 ORTHO05D004249 1.9e-215 753.1 702 62.5
CiPaw.07G188300 Carya illinoinensis HOM05D003653 ORTHO05D004249 6.2e-214 748.0 707 61.8
Dinv11396 Davidia involucrata HOM05D003653 ORTHO05D004249 1.8e-213 746.5 701 61.9
Potri.010G138900 Populus trichocarpa HOM05D003653 ORTHO05D004249 8.9e-213 744.2 700 61.3
Atru.chr7.1784 Acer truncatum HOM05D003653 ORTHO05D004249 2.6e-212 742.7 702 61.8
COL.COLO4_21195 Corchorus olitorius HOM05D003653 ORTHO05D004249 2.6e-212 742.7 703 60.9
Gohir.A06G084400 Gossypium hirsutum HOM05D003653 ORTHO05D004249 3.4e-212 742.3 703 61.2
Ciclev10007512m.g Citrus clementina HOM05D003653 ORTHO05D004249 4.4e-212 741.9 702 61.5
CANSAT56G3945 Cannabis sativa HOM05D003653 ORTHO05D004249 7.6e-212 741.1 705 61.7
SGA_v2.0_scaffold55G19872 Striga asiatica HOM05D003653 ORTHO05D004249 9.9e-212 740.7 703 60.7
Gohir.D06G081700 Gossypium hirsutum HOM05D003653 ORTHO05D004249 2.9e-211 739.2 703 60.6
Gorai.010G095200 Gossypium raimondii HOM05D003653 ORTHO05D004249 2.9e-211 739.2 703 60.6
FvH4_1g09540 Fragaria vesca HOM05D003653 ORTHO05D004249 7.1e-210 734.6 704 62.1
FAN19G0402 Fragaria x ananassa HOM05D003653 ORTHO05D004249 7.1e-210 734.6 704 62.1
Aqoxy4G00013 Aquilegia oxysepala HOM05D003653 ORTHO05D004249 1.2e-209 733.8 702 61.4
Manes.16G089600 Manihot esculenta HOM05D003653 ORTHO05D004249 1.6e-209 733.4 702 60.5
CiPaw.08G039100 Carya illinoinensis HOM05D003653 ORTHO05D004249 4.6e-209 731.9 702 60.0
Haze_18437 Corylus avellana HOM05D003653 ORTHO05D004249 4.6e-209 731.9 681 62.0
Cc06_g12780 Coffea canephora HOM05D003653 ORTHO05D004249 6.0e-209 731.5 703 60.2
RcHm_v2.0_Chr2g0096121 Rosa chinensis HOM05D003653 ORTHO05D004249 7.8e-209 731.1 704 61.8
Aqoxy7G04180 Aquilegia oxysepala HOM05D003653 ORTHO05D004249 1.0e-208 730.7 702 61.3
FAN23G3130 Fragaria x ananassa HOM05D003653 ORTHO05D004249 1.3e-208 730.3 702 61.8
FAN26G2747 Fragaria x ananassa HOM05D003653 ORTHO05D004249 1.3e-208 730.3 702 61.8
THA.LOC104812181 Tarenaya hassleriana HOM05D003653 ORTHO05D004249 2.3e-208 729.6 705 60.3
FAN28G1145 Fragaria x ananassa HOM05D003653 ORTHO05D004249 6.6e-208 728.0 702 61.7
Eucgr.C00763 Eucalyptus grandis HOM05D003653 ORTHO05D004249 1.1e-207 727.2 705 60.4
Glyma.13G114900 Glycine max HOM05D003653 ORTHO05D004249 1.1e-207 727.2 702 60.0
MSTRG.26501 Avicennia marina HOM05D003653 ORTHO05D004249 1.5e-207 726.9 702 60.3
vmacro03339 Vaccinium macrocarpon HOM05D003653 ORTHO05D004249 1.9e-207 726.5 729 60.2
TPR.G12688 Trifolium pratense HOM05D003653 ORTHO05D004249 5.6e-207 724.9 701 59.8
TAR626G0857 Trochodendron aralioides HOM05D003653 ORTHO05D004249 5.6e-207 724.9 702 60.7
Sc18g0002910 Simmondsia chinensis HOM05D003653 ORTHO05D004249 1.6e-206 723.4 702 59.4
Lj4g0027638 Lotus japonicus HOM05D003653 ORTHO05D004249 2.1e-206 723.0 702 59.4
Psat4g019560 Pisum sativum HOM05D003653 ORTHO05D004249 3.6e-206 722.2 702 59.8
Glyma.17G045100 Glycine max HOM05D003653 ORTHO05D004249 4.7e-206 721.8 702 59.7
arahy.Tifrunner.gnm1.ann1.H5KB4L Arachis hypogaea HOM05D003653 ORTHO05D004249 1.1e-205 720.7 702 59.4
VMungo1215G1873 Vigna mungo HOM05D003653 ORTHO05D004249 1.1e-205 720.7 702 59.8
Thhalv10018146m.g Eutrema salsugineum HOM05D003653 ORTHO05D004249 1.8e-205 719.9 705 59.9
Gorai.013G221900 Gossypium raimondii HOM05D003653 ORTHO05D004249 1.8e-205 719.9 703 59.5
Manes.03G045400 Manihot esculenta HOM05D003653 ORTHO05D004249 2.4e-205 719.5 702 60.0
Medtr4g124570 Medicago truncatula HOM05D003653 ORTHO05D004249 3.1e-205 719.2 702 59.4
C06p47610 Brassica napus HOM05D003653 ORTHO05D004249 6.9e-205 718.0 705 59.7
SalBow5G5324 Salvia bowleyana HOM05D003653 ORTHO05D004249 9.0e-205 717.6 702 59.0
Lalb_Chr13g0299181 Lupinus albus HOM05D003653 ORTHO05D004249 1.5e-204 716.8 702 59.8
MD02G1104000 Malus domestica HOM05D003653 ORTHO05D004249 1.5e-204 716.8 708 60.0
MD15G1224400 Malus domestica HOM05D003653 ORTHO05D004249 2.0e-204 716.5 704 60.2
DCAR_028533 Daucus carota HOM05D003653 ORTHO05D004249 2.6e-204 716.1 703 59.9
Gohir.A13G188800 Gossypium hirsutum HOM05D003653 ORTHO05D004249 4.4e-204 715.3 703 59.2
HanXRQChr11g0323951 Helianthus annuus HOM05D003653 ORTHO05D004249 4.4e-204 715.3 704 58.7
Sp5g28630 Schrenkiella parvula HOM05D003653 ORTHO05D004249 4.4e-204 715.3 704 59.7
Gohir.D13G195800 Gossypium hirsutum HOM05D003653 ORTHO05D004249 7.6e-204 714.5 703 59.0
Aqoxy1G02116 Aquilegia oxysepala HOM05D003653 ORTHO05D004249 1.7e-203 713.4 702 60.0
AL2G33210 Arabidopsis lyrata HOM05D003653 ORTHO05D004249 1.7e-203 713.4 704 59.5
Phvul.003G126900 Phaseolus vulgaris HOM05D003653 ORTHO05D004249 2.2e-203 713.0 702 59.3
RcHm_v2.0_Chr2g0096281 Rosa chinensis HOM05D003653 ORTHO05D004249 4.9e-203 711.8 683 61.2
Carub.0001s3831 Capsella rubella HOM05D003653 ORTHO05D004249 1.1e-202 710.7 704 59.1
ATR0099G047 Amborella trichopoda HOM05D003653 ORTHO05D004249 1.4e-202 710.3 702 59.4
AT1G73430 Arabidopsis thaliana HOM05D003653 ORTHO05D004249 2.1e-201 706.4 704 59.2
Migut.L01598 Erythranthe guttata HOM05D003653 ORTHO05D004249 2.7e-201 706.1 703 58.6
Hma1.2p1_0179F.1_g079140 Hydrangea macrophylla HOM05D003653 ORTHO05D004249 3.5e-201 705.7 703 58.7
PSO724G1082 Papaver somniferum HOM05D003653 ORTHO05D004249 1.5e-199 700.3 703 58.0
PSO541G4412 Papaver somniferum HOM05D003653 ORTHO05D004249 4.3e-199 698.7 698 58.5
CDE08G1372 Ceratophyllum demersum HOM05D003653 ORTHO05D004249 3.6e-198 695.7 702 58.1
PSO135G0095 Papaver somniferum HOM05D003653 ORTHO05D004249 3.1e-197 692.6 703 57.5
Sopen04g003800 Solanum pennellii HOM05D003653 ORTHO05D004249 4.0e-197 692.2 703 57.8
ECA247G3145 Erigeron canadensis HOM05D003653 ORTHO05D004249 6.9e-197 691.4 701 58.1
Ah.09g228870 Amaranthus hybridus HOM05D003653 ORTHO05D004249 2.0e-196 689.9 702 57.4
Os08g0451000 Oryza sativa ssp. japonica HOM05D003653 ORTHO05D004249 2.6e-196 689.5 702 57.1
Peaxi162Scf00320g00019 Petunia axillaris HOM05D003653 ORTHO05D004249 4.5e-196 688.7 680 59.1
Aa31LG4G3690 Aethionema arabicum HOM05D003653 ORTHO05D004249 5.8e-196 688.3 704 57.5
Solyc04g008640.3 Solanum lycopersicum HOM05D003653 ORTHO05D004249 9.9e-196 687.6 703 57.3
CAN.G2030.2 Capsicum annuum HOM05D003653 ORTHO05D004249 1.3e-195 687.2 703 57.3
Lj4C921G8 Lonicera japonica HOM05D003653 ORTHO05D004249 8.4e-195 684.5 703 58.9
MBI13_g01694_MAGBIO Magnolia biondii HOM05D003653 ORTHO05D004249 8.4e-195 684.5 702 58.8
Rhsim06G0154000 Rhododendron simsii HOM05D003653 ORTHO05D004249 1.9e-194 683.3 651 62.2
PGSC0003DMG400026759 Solanum tuberosum HOM05D003653 ORTHO05D004249 3.2e-194 682.6 706 57.1
Duzib150G1359 Durio zibethinus HOM05D003653 ORTHO05D004249 4.2e-194 682.2 687 57.8
Nitab4.5_0001114g0100 Nicotiana tabacum HOM05D003653 ORTHO05D004249 7.1e-194 681.4 702 57.0
Oeu028863.2 Olea europaea HOM05D003653 ORTHO05D004249 2.1e-193 679.9 732 57.1
A07p39380 Brassica napus HOM05D003653 ORTHO05D004249 3.5e-193 679.1 705 57.4
BolC6t39799H Brassica oleracea HOM05D003653 ORTHO05D004249 3.0e-192 676.0 710 57.3
Nn8g38522 Nelumbo nucifera HOM05D003653 ORTHO05D004249 6.7e-192 674.9 701 57.8
EL10Ac8g18959 Beta vulgaris HOM05D003653 ORTHO05D004249 1.5e-191 673.7 702 56.4
Sabra10G0107200 Salix brachista HOM05D003653 ORTHO05D004249 1.9e-191 673.3 701 56.8
CAN.G137.40 Capsicum annuum HOM05D003653 ORTHO05D004249 2.1e-190 669.8 703 56.2
arahy.Tifrunner.gnm1.ann1.LZJ3ZW Arachis hypogaea HOM05D003653 ORTHO05D004249 4.9e-187 658.7 702 55.7
Lsat_1_v5_gn_9_48260 Lactuca sativa HOM05D003653 ORTHO05D004249 1.4e-186 657.1 684 56.0
Carub.0002s2017 Capsella rubella HOM05D003653 ORTHO05D004249 5.5e-186 655.2 767 53.3
CARHR066480 Cardamine hirsuta HOM05D003653 ORTHO05D004249 9.3e-186 654.4 703 55.6
Hund08907 Selenicereus undatus HOM05D003653 ORTHO05D004249 2.1e-185 653.3 703 55.5
unitig_8.g3535 Utricularia gibba HOM05D003653 ORTHO05D004249 1.0e-184 651.0 707 54.7
Actinidia05573 Actinidia chinensis HOM05D003653 ORTHO05D004249 8.2e-182 641.3 696 56.0
Duzib187G0285 Durio zibethinus HOM05D003653 ORTHO05D004249 1.8e-181 640.2 625 59.4
BraA07t31487Z Brassica rapa HOM05D003653 ORTHO05D004249 1.5e-180 637.1 710 55.1
AUR62028329 Chenopodium quinoa HOM05D003653 ORTHO05D004249 1.7e-179 633.6 702 54.3
BcaC08g46765 Brassica carinata HOM05D003653 ORTHO05D004249 3.2e-178 629.4 703 55.0
Lj6C86G4 Lonicera japonica HOM05D003653 ORTHO05D004249 4.6e-177 625.5 702 55.4
C02p31060 Brassica napus HOM05D003653 ORTHO05D004249 6.3e-174 615.1 707 55.0
Mapoly0109s0022 Marchantia polymorpha HOM05D003653 ORTHO05D004249 5.7e-167 592.0 702 49.1
HPP92_012790 Vanilla planifolia HOM05D003653 ORTHO05D004249 9.7e-167 591.3 686 51.6
FAN26G0928 Fragaria x ananassa HOM05D003653 ORTHO05D004249 1.7e-166 590.5 700 54.0
AUR62025332 Chenopodium quinoa HOM05D003653 ORTHO05D004249 1.5e-156 557.4 660 52.3
Pp3c10_7010 Physcomitrium patens HOM05D003653 ORTHO05D004249 2.6e-156 556.6 691 48.3
BolC2t09153H Brassica oleracea HOM05D003653 ORTHO05D004249 5.0e-155 552.4 609 54.7
Zm00001eb040740 Zea mays HOM05D003653 ORTHO05D004249 1.9e-154 550.4 590 54.6
Sopen07g006320 Solanum pennellii HOM05D003653 ORTHO05D004249 3.1e-149 533.1 684 50.0
SMO196G0011 Selaginella moellendorffii HOM05D003653 ORTHO05D004249 4.5e-148 529.3 696 46.8
Cpa.g.sc82.47 Carica papaya HOM05D003653 ORTHO05D004249 7.2e-138 495.4 509 57.4
Haze_06172 Corylus avellana HOM05D003653 ORTHO05D004249 6.8e-128 462.2 613 48.6
PSO675G3146 Papaver somniferum HOM05D003653 ORTHO05D004249 1.3e-123 448.0 565 50.6
CBR_g20391 Chara braunii HOM05D003653 ORTHO05D004249 8.6e-123 445.3 773 39.5
CAN.G1364.1 Capsicum annuum HOM05D003653 ORTHO05D004249 8.6e-115 418.7 543 48.6
Pp3c14_9870 Physcomitrium patens HOM05D003653 ORTHO05D004249 2.4e-109 400.6 689 38.8
Lj6C103G5 Lonicera japonica HOM05D003653 ORTHO05D004249 1.5e-103 381.3 577 46.3
ECA232G2537 Erigeron canadensis HOM05D003653 ORTHO05D004249 6.4e-102 375.9 623 42.7
BcaNung06460 Brassica carinata HOM05D003653 ORTHO05D004249 4.1e-101 373.2 466 49.8
SEGI_38760 Sequoiadendron giganteum HOM05D003653 ORTHO05D004249 5.8e-95 352.8 394 52.3
Cre03.g203750 Chlamydomonas reinhardtii HOM05D003653 ORTHO05D004249 4.9e-86 323.2 787 33.3
CSS0010075 Camellia sinensis var. sinensis HOM05D003653 ORTHO05D004249 5.8e-79 299.7 210 77.6
TAR383G1054 Trochodendron aralioides HOM05D003653 ORTHO05D004249 4.2e-69 266.9 342 52.3
Nitab4.5_0022446g0010 Nicotiana tabacum HOM05D003653 ORTHO05D004249 9.0e-64 249.2 322 47.5
Solyc07g017520.4 Solanum lycopersicum HOM05D003653 ORTHO05D004249 1.3e-59 235.3 223 61.0
CSS0022852 Camellia sinensis var. sinensis HOM05D003653 ORTHO05D004249 1.8e-56 224.9 163 74.2
Haze_06171 Corylus avellana HOM05D003653 ORTHO05D004249 7.2e-53 213.0 151 78.1
Lj6A103G48 Lonicera japonica HOM05D003653 ORTHO05D004249 1.6e-52 211.8 163 70.6
PRCOL_00003556 Prasinoderma coloniale HOM05D003653 ORTHO05D004249 1.0e-51 209.1 710 27.0
Lsat_1_v5_gn_7_58641 Lactuca sativa HOM05D003653 ORTHO05D004249 1.8e-48 198.4 126 83.3
Lsat_1_v5_gn_2_26321 Lactuca sativa HOM05D003653 ORTHO05D004249 3.1e-48 197.6 126 83.3
Lsat_1_v5_gn_2_82101 Lactuca sativa HOM05D003653 ORTHO05D004249 7.7e-47 193.0 126 81.0
Haze_16164 Corylus avellana HOM05D003653 ORTHO05D004249 3.8e-46 190.7 188 58.0
Lsat_1_v5_gn_4_28660 Lactuca sativa HOM05D003653 ORTHO05D004249 6.5e-46 189.9 126 81.7
Lsat_1_v5_gn_5_93841 Lactuca sativa HOM05D003653 ORTHO05D004249 8.5e-46 189.5 126 80.2
CAN.G4608.1 Capsicum annuum HOM05D003653 ORTHO05D004249 2.6e-42 177.9 130 70.8
Actinidia26999 Actinidia chinensis HOM05D003653 ORTHO05D004249 3.3e-42 177.6 137 73.0
Lsat_1_v5_gn_7_30301 Lactuca sativa HOM05D003653 ORTHO05D004249 9.7e-42 176.0 163 62.0
Lsat_1_v5_gn_2_18300 Lactuca sativa HOM05D003653 ORTHO05D004249 1.4e-35 155.6 104 80.8
Haze_16166 Corylus avellana HOM05D003653 ORTHO05D004249 2.6e-34 151.4 114 75.4
QL02p096270 Quercus lobata HOM05D003653 ORTHO05D004249 2.4e-32 144.8 126 62.7
RcHm_v2.0_Chr2g0096141 Rosa chinensis HOM05D003653 ORTHO05D004249 5.3e-32 143.7 116 67.2
Gorai.013G153500 Gossypium raimondii HOM05D003653 ORTHO05D004249 1.7e-30 138.7 106 67.9
Oeu030621.1 Olea europaea HOM05D003653 ORTHO05D004249 1.1e-29 136.0 131 60.3
Haze_19192 Corylus avellana HOM05D003653 ORTHO05D004249 7.2e-29 133.3 126 63.5
SEGI_01409 Sequoiadendron giganteum HOM05D003653 ORTHO05D004249 1.2e-23 115.9 117 58.1
Cfa023740 Carpinus fangiana HOM05D003653 ORTHO05D004249 1.6e-23 115.5 668 23.2
Gohir.D13G136950 Gossypium hirsutum HOM05D003653 ORTHO05D004249 2.0e-23 115.2 96 64.6
Nitab4.5_0000055g0010 Nicotiana tabacum HOM05D003653 ORTHO05D004249 4.5e-23 114.0 82 75.6
SEGI_20750 Sequoiadendron giganteum HOM05D003653 ORTHO05D004249 7.7e-23 113.2 105 56.2
SEGI_27322 Sequoiadendron giganteum HOM05D003653 ORTHO05D004249 4.9e-17 94.0 63 69.8
CAN.G12730.1 Capsicum annuum HOM05D003653 ORTHO05D004249 8.3e-17 93.2 79 63.3
TAR383G0271 Trochodendron aralioides HOM05D003653 ORTHO05D004249 1.1e-16 92.8 86 64.0
Lsat_1_v5_gn_6_63001 Lactuca sativa HOM05D003653 ORTHO05D004249 2.9e-14 84.7 50 82.0
CSS0022673 Camellia sinensis var. sinensis HOM05D003653 ORTHO05D004249 1.1e-13 82.8 48 83.3
Gohir.D08G133700 Gossypium hirsutum HOM05D003653 ORTHO05D004249 9.5e-13 79.7 50 78.0
VMungo1215G0910 Vigna mungo HOM05D003653 ORTHO05D004249 2.1e-12 78.6 124 45.2
Gorai.004G136800 Gossypium raimondii HOM05D003653 ORTHO05D004249 8.0e-12 76.6 50 76.0
Medtr8g018610 Medicago truncatula HOM05D003653 ORTHO05D004249 1.8e-08 65.5 42 71.4
Lsat_1_v5_gn_2_35921 Lactuca sativa HOM05D003653 ORTHO05D004249 1.2e-07 62.8 41 78.0


User provided reference genes

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