Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG08G004640 Citrullus lanatus HOM05D006659 ORTHO05D008372 2.1e-130 469.2 257 100.0
MELO3C011657.2 Cucumis melo HOM05D006659 ORTHO05D008372 2.4e-118 429.1 258 91.9
CsaV3_6G003920 Cucumis sativus L. HOM05D006659 ORTHO05D008372 2.1e-114 416.0 261 88.9
Sed0004224 Sechium edule HOM05D006659 ORTHO05D008372 1.9e-99 366.3 260 79.6
Sed0027988 Sechium edule HOM05D006659 ORTHO05D008372 1.5e-96 356.7 263 78.3
arahy.Tifrunner.gnm1.ann1.AVW0M7 Arachis hypogaea HOM05D006659 ORTHO05D008372 2.9e-71 272.7 262 55.7
Lalb_Chr03g0026131 Lupinus albus HOM05D006659 ORTHO05D008372 3.8e-71 272.3 263 58.2
Rhsim09G0027800 Rhododendron simsii HOM05D006659 ORTHO05D008372 3.8e-71 272.3 205 66.3
TPR.G34236 Trifolium pratense HOM05D006659 ORTHO05D008372 1.4e-70 270.4 267 56.6
RhsimUnG0221100 Rhododendron simsii HOM05D006659 ORTHO05D008372 3.2e-70 269.2 205 65.9
CiPaw.01G100500 Carya illinoinensis HOM05D006659 ORTHO05D008372 1.2e-69 267.3 269 56.9
CSS0040017 Camellia sinensis var. sinensis HOM05D006659 ORTHO05D008372 2.1e-69 266.5 273 59.0
Duzib151G0383 Durio zibethinus HOM05D006659 ORTHO05D008372 2.7e-69 266.2 261 60.9
Medtr4g067150 Medicago truncatula HOM05D006659 ORTHO05D008372 2.7e-69 266.2 268 56.0
Potri.007G128200 Populus trichocarpa HOM05D006659 ORTHO05D008372 3.5e-69 265.8 270 62.6
Prupe.1G193000 Prunus persica HOM05D006659 ORTHO05D008372 7.8e-69 264.6 267 57.3
CSS0046315 Camellia sinensis var. sinensis HOM05D006659 ORTHO05D008372 1.0e-68 264.2 268 60.4
Ca_20785_v3 Cicer arietinum L. HOM05D006659 ORTHO05D008372 1.0e-68 264.2 260 62.7
Lsat_1_v5_gn_1_120661 Lactuca sativa HOM05D006659 ORTHO05D008372 1.0e-68 264.2 188 71.8
GSVIVG01010754001 Vitis vinifera HOM05D006659 ORTHO05D008372 1.0e-68 264.2 209 65.6
Haze_01513 Corylus avellana HOM05D006659 ORTHO05D008372 1.7e-68 263.5 262 57.3
QL10p048762 Quercus lobata HOM05D006659 ORTHO05D008372 1.7e-68 263.5 264 56.8
arahy.Tifrunner.gnm1.ann1.Q6M2DC Arachis hypogaea HOM05D006659 ORTHO05D008372 2.3e-68 263.1 264 54.5
Cc03_g13110 Coffea canephora HOM05D006659 ORTHO05D008372 3.0e-68 262.7 267 55.4
Lj3g0013401 Lotus japonicus HOM05D006659 ORTHO05D008372 3.9e-68 262.3 273 53.8
Thecc.04G179900 Theobroma cacao HOM05D006659 ORTHO05D008372 3.9e-68 262.3 194 67.5
Gohir.D10G129500 Gossypium hirsutum HOM05D006659 ORTHO05D008372 6.6e-68 261.5 193 69.9
Gorai.011G142800 Gossypium raimondii HOM05D006659 ORTHO05D008372 6.6e-68 261.5 193 69.9
COL.COLO4_07662 Corchorus olitorius HOM05D006659 ORTHO05D008372 1.1e-67 260.8 184 70.7
Cpa.g.sc9.272 Carica papaya HOM05D006659 ORTHO05D008372 1.9e-67 260.0 198 66.2
MSTRG.24582 Avicennia marina HOM05D006659 ORTHO05D008372 3.3e-67 259.2 248 56.0
Atru.chr3.1492 Acer truncatum HOM05D006659 ORTHO05D008372 4.3e-67 258.8 228 62.3
Oeu053837.1 Olea europaea HOM05D006659 ORTHO05D008372 5.6e-67 258.5 255 59.6
Gohir.A10G137100 Gossypium hirsutum HOM05D006659 ORTHO05D008372 9.6e-67 257.7 193 68.9
Duzib212G0569 Durio zibethinus HOM05D006659 ORTHO05D008372 1.6e-66 256.9 270 60.7
Lalb_Chr01g0003161 Lupinus albus HOM05D006659 ORTHO05D008372 1.6e-66 256.9 266 54.9
Glyma.12G052500 Glycine max HOM05D006659 ORTHO05D008372 8.1e-66 254.6 270 53.0
Psat7g214800 Pisum sativum HOM05D006659 ORTHO05D008372 8.1e-66 254.6 259 57.9
THA.LOC104802307 Tarenaya hassleriana HOM05D006659 ORTHO05D008372 8.1e-66 254.6 250 56.0
Manes.11G120400 Manihot esculenta HOM05D006659 ORTHO05D008372 1.1e-65 254.2 274 56.9
THA.LOC104803695 Tarenaya hassleriana HOM05D006659 ORTHO05D008372 1.8e-65 253.4 258 60.5
Dinv44193 Davidia involucrata HOM05D006659 ORTHO05D008372 4.0e-65 252.3 184 68.5
VMungo1127G1494 Vigna mungo HOM05D006659 ORTHO05D008372 5.2e-65 251.9 241 55.2
MD04G1040300 Malus domestica HOM05D006659 ORTHO05D008372 6.9e-65 251.5 241 58.5
Phvul.011G054500 Phaseolus vulgaris HOM05D006659 ORTHO05D008372 6.9e-65 251.5 212 61.3
Potri.017G030100 Populus trichocarpa HOM05D006659 ORTHO05D008372 8.9e-65 251.1 272 59.2
PGR083G0301 Punica granatum HOM05D006659 ORTHO05D008372 8.9e-65 251.1 188 65.4
Ciclev10021505m.g Citrus clementina HOM05D006659 ORTHO05D008372 5.8e-64 248.4 198 65.2
Sabra17G0019600 Salix brachista HOM05D006659 ORTHO05D008372 7.6e-64 248.1 202 63.9
TAR362G1327 Trochodendron aralioides HOM05D006659 ORTHO05D008372 7.6e-64 248.1 245 59.6
Sabra07G0104600 Salix brachista HOM05D006659 ORTHO05D008372 1.7e-63 246.9 257 61.1
CANSAT78G0008 Cannabis sativa HOM05D006659 ORTHO05D008372 2.2e-63 246.5 194 64.9
HanXRQChr01g0004971 Helianthus annuus HOM05D006659 ORTHO05D008372 8.4e-63 244.6 189 65.6
Aqoxy2G04093 Aquilegia oxysepala HOM05D006659 ORTHO05D008372 1.4e-62 243.8 271 51.7
Cfa015167 Carpinus fangiana HOM05D006659 ORTHO05D008372 1.4e-62 243.8 177 67.2
RcHm_v2.0_Chr4g0406801 Rosa chinensis HOM05D006659 ORTHO05D008372 1.4e-62 243.8 198 63.1
Gorai.006G228300 Gossypium raimondii HOM05D006659 ORTHO05D008372 1.9e-62 243.4 187 65.2
ECA248G3871 Erigeron canadensis HOM05D006659 ORTHO05D008372 2.4e-62 243.0 186 66.1
Gohir.A09G211000 Gossypium hirsutum HOM05D006659 ORTHO05D008372 3.2e-62 242.7 257 58.0
Dinv22730 Davidia involucrata HOM05D006659 ORTHO05D008372 5.4e-62 241.9 174 69.5
Gohir.D09G204400 Gossypium hirsutum HOM05D006659 ORTHO05D008372 7.1e-62 241.5 261 58.6
TWI14G0225 Tripterygium wilfordii HOM05D006659 ORTHO05D008372 6.0e-61 238.4 261 55.2
TWI39G0181 Tripterygium wilfordii HOM05D006659 ORTHO05D008372 6.0e-61 238.4 261 55.2
Zm00001eb406810 Zea mays HOM05D006659 ORTHO05D008372 7.8e-61 238.0 190 62.6
Ah.07g201990 Amaranthus hybridus HOM05D006659 ORTHO05D008372 1.0e-60 237.7 202 58.4
FAN12G1956 Fragaria x ananassa HOM05D006659 ORTHO05D008372 1.0e-60 237.7 211 58.3
BcaC07g40458 Brassica carinata HOM05D006659 ORTHO05D008372 1.7e-60 236.9 259 56.0
FvH4_4g10790 Fragaria vesca HOM05D006659 ORTHO05D008372 1.7e-60 236.9 213 58.7
ATR0824G177 Amborella trichopoda HOM05D006659 ORTHO05D008372 2.3e-60 236.5 203 61.1
MBI08_g14954_MAGBIO Magnolia biondii HOM05D006659 ORTHO05D008064 3.0e-60 236.1 255 54.9
Os11g0267000 Oryza sativa ssp. japonica HOM05D006659 ORTHO05D008372 3.9e-60 235.7 192 60.9
unitig_578.g16263 Utricularia gibba HOM05D006659 ORTHO05D008372 6.6e-60 235.0 257 50.2
Actinidia35977 Actinidia chinensis HOM05D006659 ORTHO05D008372 8.7e-60 234.6 242 59.9
Aa31LG10G13750 Aethionema arabicum HOM05D006659 ORTHO05D008372 5.6e-59 231.9 191 59.7
Sopen06g029650 Solanum pennellii HOM05D006659 ORTHO05D008372 7.3e-59 231.5 280 51.4
PSO675G8713 Papaver somniferum HOM05D006659 ORTHO05D008372 9.6e-59 231.1 236 53.4
PGSC0003DMG400027013 Solanum tuberosum HOM05D006659 ORTHO05D008372 9.6e-59 231.1 274 51.8
Lj6C54T1 Lonicera japonica HOM05D006659 ORTHO05D008372 2.8e-58 229.6 186 62.4
Nitab4.5_0008969g0010 Nicotiana tabacum HOM05D006659 ORTHO05D008372 8.1e-58 228.0 254 53.9
EL10Ac3g05931 Beta vulgaris HOM05D006659 ORTHO05D008372 1.1e-57 227.6 279 49.1
BcaC07g40279 Brassica carinata HOM05D006659 ORTHO05D008372 1.1e-57 227.6 263 54.8
A09p51640 Brassica napus HOM05D006659 ORTHO05D008372 1.1e-57 227.6 264 52.7
C08p34410 Brassica napus HOM05D006659 ORTHO05D008372 1.1e-57 227.6 263 54.8
BolC8t51042H Brassica oleracea HOM05D006659 ORTHO05D008372 1.1e-57 227.6 263 54.8
BraA09t40604Z Brassica rapa HOM05D006659 ORTHO05D008372 1.8e-57 226.9 264 54.2
CAN.G65.172 Capsicum annuum HOM05D006659 ORTHO05D008372 1.8e-57 226.9 202 60.9
BraA07t30109Z Brassica rapa HOM05D006659 ORTHO05D008372 3.1e-57 226.1 263 54.8
PSO017G5731 Papaver somniferum HOM05D006659 ORTHO05D008372 3.1e-57 226.1 239 51.9
Solyc06g073290.1 Solanum lycopersicum HOM05D006659 ORTHO05D008372 3.1e-57 226.1 278 50.4
A07p24640 Brassica napus HOM05D006659 ORTHO05D008372 9.0e-57 224.6 248 57.7
FAN07G0020 Fragaria x ananassa HOM05D006659 ORTHO05D008372 9.0e-57 224.6 254 50.4
BolC6t37777H Brassica oleracea HOM05D006659 ORTHO05D008372 2.6e-56 223.0 264 54.9
BcaC08g44982 Brassica carinata HOM05D006659 ORTHO05D008372 3.4e-56 222.6 264 54.5
C06p26120 Brassica napus HOM05D006659 ORTHO05D008372 5.8e-56 221.9 262 54.6
Migut.N03108 Erythranthe guttata HOM05D006659 ORTHO05D008372 5.8e-56 221.9 192 58.9
BcaB02g07470 Brassica carinata HOM05D006659 ORTHO05D008372 1.7e-55 220.3 263 52.9
AL5G41300 Arabidopsis lyrata HOM05D006659 ORTHO05D008372 6.4e-55 218.4 196 57.7
CARHR169790 Cardamine hirsuta HOM05D006659 ORTHO05D008372 6.4e-55 218.4 205 56.6
Carub.0005s2614 Capsella rubella HOM05D006659 ORTHO05D008372 2.4e-54 216.5 193 57.0
SGA_v2.0_scaffold31G12575 Striga asiatica HOM05D006659 ORTHO05D008372 3.2e-54 216.1 225 52.4
AUR62015391 Chenopodium quinoa HOM05D006283 ORTHO05D007727 4.2e-54 215.7 210 53.3
AT3G59400 Arabidopsis thaliana HOM05D006659 ORTHO05D008372 5.4e-54 215.3 191 58.6
Sp5g03740 Schrenkiella parvula HOM05D006659 ORTHO05D008372 5.4e-54 215.3 252 54.8
Manes.04G042918 Manihot esculenta HOM05D006659 ORTHO05D008372 1.6e-53 213.8 277 52.0
Thhalv10006183m.g Eutrema salsugineum HOM05D006659 ORTHO05D008372 2.1e-53 213.4 265 54.7
SalBow6G0037 Salvia bowleyana HOM05D006659 ORTHO05D008372 2.1e-53 213.4 251 56.2
Glyma.11G127800 Glycine max HOM05D006659 ORTHO05D008372 1.9e-51 206.8 220 52.3
SEGI_36451 Sequoiadendron giganteum HOM05D006659 ORTHO05D008372 1.5e-48 197.2 154 58.4
AagrBONN_evm.TU.Sc2ySwM_228.5135 Anthoceros agrestis HOM05D006659 ORTHO05D008372 3.7e-42 176.0 159 52.2
CDE04G1206 Ceratophyllum demersum HOM05D006659 ORTHO05D008372 1.8e-41 173.7 136 60.3
Peaxi162Scf00413g00827 Petunia axillaris HOM05D006659 ORTHO05D008372 4.5e-40 169.1 246 45.1
Pp3c6_11210 Physcomitrium patens HOM05D006659 ORTHO05D008372 4.9e-39 165.6 161 51.6
SMO170G0079 Selaginella moellendorffii HOM05D006659 ORTHO05D008372 4.9e-39 165.6 168 48.8
Pp3c25_4400 Physcomitrium patens HOM05D006659 ORTHO05D008372 6.5e-39 165.2 161 50.9
VMungo1309G1939 Vigna mungo HOM05D006659 ORTHO05D008372 1.9e-38 163.7 202 45.5
Mapoly0173s0019 Marchantia polymorpha HOM05D006659 ORTHO05D008372 3.2e-38 162.9 182 46.7
CBR_g10809 Chara braunii HOM05D006659 ORTHO05D008372 6.0e-37 158.7 158 50.6
Cre05.g246800 Chlamydomonas reinhardtii HOM05D006659 ORTHO05D008372 1.7e-31 140.6 165 45.5
Oeu053835.1 Olea europaea HOM05D006659 ORTHO05D008372 2.2e-31 140.2 112 62.5
MCO04G521 Micromonas commoda HOM05D006659 ORTHO05D008372 1.9e-30 137.1 166 42.2
Eucgr.H00371 Eucalyptus grandis HOM05D006659 ORTHO05D008372 4.3e-27 125.9 109 62.4
PRCOL_00006170 Prasinoderma coloniale HOM05D006659 ORTHO05D008372 5.7e-27 125.6 170 40.0


User provided reference genes

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