Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG08G004240 Citrullus lanatus HOM05D007575 ORTHO05D009611 4.8e-291 1003.8 528 100.0
CsaV3_6G003720 Cucumis sativus L. HOM05D007575 ORTHO05D009611 1.4e-250 869.4 528 87.3
MELO3C011621.2 Cucumis melo HOM05D007575 ORTHO05D009611 6.4e-243 844.0 527 86.0
Sed0001943 Sechium edule HOM05D007575 ORTHO05D009611 3.8e-211 738.4 537 76.2
QL10p045159 Quercus lobata HOM05D007575 ORTHO05D009611 6.2e-129 465.3 544 51.7
Cfa015783 Carpinus fangiana HOM05D007575 ORTHO05D009611 8.4e-126 454.9 548 50.5
Haze_00711 Corylus avellana HOM05D007575 ORTHO05D009611 4.6e-124 449.1 548 51.1
CiPaw.01G103900 Carya illinoinensis HOM05D007575 ORTHO05D009611 1.0e-123 448.0 549 50.3
Prupe.1G189300 Prunus persica HOM05D007575 ORTHO05D009611 5.4e-117 425.6 549 49.2
Sabra07G0100200 Salix brachista HOM05D007575 ORTHO05D009611 7.1e-117 425.2 551 50.8
MD04G1038600 Malus domestica HOM05D007575 ORTHO05D009611 2.1e-116 423.7 539 49.5
Manes.11G115700 Manihot esculenta HOM05D007575 ORTHO05D009611 1.1e-114 417.9 549 49.2
Potri.017G036600 Populus trichocarpa HOM05D007575 ORTHO05D009611 1.2e-111 407.9 544 48.2
GSVIVG01013567001 Vitis vinifera HOM05D007575 ORTHO05D009611 4.5e-111 406.0 553 47.9
Thecc.04G183800 Theobroma cacao HOM05D007575 ORTHO05D009611 2.5e-109 400.2 543 48.4
CSS0031716 Camellia sinensis var. sinensis HOM05D007575 ORTHO05D009611 5.5e-109 399.1 587 46.0
Rhsim09G0032600 Rhododendron simsii HOM05D007575 ORTHO05D009611 1.6e-108 397.5 553 47.4
Actinidia39859 Actinidia chinensis HOM05D007575 ORTHO05D009611 4.6e-108 396.0 581 46.8
CANSAT78G0404 Cannabis sativa HOM05D007575 ORTHO05D009611 6.0e-108 395.6 542 46.1
Duzib151G0056 Durio zibethinus HOM05D007575 ORTHO05D009611 4.3e-106 389.4 544 48.7
Gorai.011G145500 Gossypium raimondii HOM05D007575 ORTHO05D009611 9.6e-106 388.3 551 47.0
Eucgr.A00245 Eucalyptus grandis HOM05D007575 ORTHO05D009611 4.8e-105 386.0 544 47.6
HanXRQChr02g0057801 Helianthus annuus HOM05D007575 ORTHO05D009611 4.8e-105 386.0 544 46.9
Gohir.D10G131800 Gossypium hirsutum HOM05D007575 ORTHO05D009611 6.2e-105 385.6 551 47.2
FAN17G1632 Fragaria x ananassa HOM05D007575 ORTHO05D009611 2.6e-103 380.2 597 44.2
Gohir.A10G134800 Gossypium hirsutum HOM05D007575 ORTHO05D009611 5.8e-103 379.0 549 47.0
THA.LOC104803562 Tarenaya hassleriana HOM05D007575 ORTHO05D009611 1.0e-102 378.3 549 45.0
TAR633G2419 Trochodendron aralioides HOM05D007575 ORTHO05D009611 3.8e-102 376.3 533 47.3
ECA233G3130 Erigeron canadensis HOM05D007575 ORTHO05D009611 3.2e-101 373.2 536 45.9
FAN07G0850 Fragaria x ananassa HOM05D007575 ORTHO05D009611 3.2e-101 373.2 600 45.2
FvH4_4g11270 Fragaria vesca HOM05D007575 ORTHO05D009611 5.5e-101 372.5 599 44.2
Ciclev10019508m.g Citrus clementina HOM05D007575 ORTHO05D009611 7.1e-101 372.1 581 43.9
Lsat_1_v5_gn_6_54841 Lactuca sativa HOM05D007575 ORTHO05D009611 3.5e-100 369.8 532 44.0
RcHm_v2.0_Chr4g0407361 Rosa chinensis HOM05D007575 ORTHO05D009611 1.8e-99 367.5 603 43.8
Gohir.A05G326900 Gossypium hirsutum HOM05D007575 ORTHO05D009611 3.0e-99 366.7 542 45.8
PGR083G2249 Punica granatum HOM05D007575 ORTHO05D009611 1.5e-98 364.4 536 46.6
CAN.G710.64 Capsicum annuum HOM05D007575 ORTHO05D009611 1.9e-98 364.0 538 44.8
Oeu050351.1 Olea europaea HOM05D007575 ORTHO05D009611 1.3e-97 361.3 534 45.1
Gorai.009G350900 Gossypium raimondii HOM05D007575 ORTHO05D009611 3.7e-97 359.8 544 45.2
Atru.chr3.1619 Acer truncatum HOM05D007575 ORTHO05D009611 1.4e-96 357.8 503 47.9
Sp4g25330 Schrenkiella parvula HOM05D007575 ORTHO05D009611 1.4e-96 357.8 554 42.6
Potri.007G123800 Populus trichocarpa HOM05D007575 ORTHO05D009611 1.8e-96 357.5 450 50.0
Aa31LG1G25020 Aethionema arabicum HOM05D007575 ORTHO05D009611 2.4e-96 357.1 570 43.5
Gohir.D05G326300 Gossypium hirsutum HOM05D007575 ORTHO05D009611 2.4e-96 357.1 544 45.0
Cc03_g13380 Coffea canephora HOM05D007575 ORTHO05D009611 5.3e-96 355.9 544 44.7
MSTRG.24588 Avicennia marina HOM05D007575 ORTHO05D009611 7.7e-95 352.1 544 43.8
Carub.0004s2568 Capsella rubella HOM05D007575 ORTHO05D009611 1.0e-94 351.7 542 43.0
vmacro00586 Vaccinium macrocarpon HOM05D007575 ORTHO05D009611 1.0e-94 351.7 610 42.3
Lj6A70T54 Lonicera japonica HOM05D007575 ORTHO05D009611 3.8e-94 349.7 650 40.0
AL4G41870 Arabidopsis lyrata HOM05D007575 ORTHO05D009611 2.5e-93 347.1 547 43.5
DCAR_027534 Daucus carota HOM05D007575 ORTHO05D009611 2.5e-93 347.1 538 42.6
Actinidia11312 Actinidia chinensis HOM05D007575 ORTHO05D009611 5.5e-93 345.9 549 44.3
FAN22G0659 Fragaria x ananassa HOM05D007575 ORTHO05D009611 7.2e-93 345.5 610 42.5
Nn1g09745 Nelumbo nucifera HOM05D007575 ORTHO05D009611 7.2e-93 345.5 574 41.6
Sabra17G0024000 Salix brachista HOM05D007575 ORTHO05D009611 1.6e-92 344.4 593 42.2
SalBow6G5467 Salvia bowleyana HOM05D007575 ORTHO05D009611 4.6e-92 342.8 542 43.4
Sopen09g036470 Solanum pennellii HOM05D007575 ORTHO05D009611 7.9e-92 342.0 537 42.8
Thhalv10001393m.g Eutrema salsugineum HOM05D007575 ORTHO05D009611 1.8e-91 340.9 546 43.0
SGA_v2.0_scaffold406G51053 Striga asiatica HOM05D007575 ORTHO05D009611 2.3e-91 340.5 553 43.2
Migut.N00470 Erythranthe guttata HOM05D007575 ORTHO05D009611 8.8e-91 338.6 553 43.0
AT2G43210 Arabidopsis thaliana HOM05D007575 ORTHO05D009611 2.0e-90 337.4 545 42.2
BraA04t18714Z Brassica rapa HOM05D001811 ORTHO05D001738 6.9e-88 328.9 518 44.0
C04p70190 Brassica napus HOM05D007575 ORTHO05D009611 1.4e-83 314.7 558 41.8
Peaxi162Scf00286g00233 Petunia axillaris HOM05D007575 ORTHO05D009611 2.6e-82 310.5 563 38.2
A04p32490 Brassica napus HOM05D007575 ORTHO05D009611 5.7e-82 309.3 571 40.6
unitig_8.g3630 Utricularia gibba HOM05D007575 ORTHO05D009611 1.3e-81 308.1 559 39.7
CDE09G0236 Ceratophyllum demersum HOM05D007575 ORTHO05D009611 1.6e-76 291.2 536 39.9
Nitab4.5_0004962g0010 Nicotiana tabacum HOM05D007575 ORTHO05D009611 6.1e-76 289.3 457 44.4
Lj6A61T39 Lonicera japonica HOM05D007575 ORTHO05D009611 3.0e-75 287.0 370 49.5
ATR0743G244 Amborella trichopoda HOM05D007575 ORTHO05D009611 1.5e-74 284.6 555 37.5
MBI08_g10298_MAGBIO Magnolia biondii HOM05D007575 ORTHO05D009611 3.3e-74 283.5 623 38.0
HPP92_002813 Vanilla planifolia HOM05D007575 ORTHO05D009611 5.7e-74 282.7 539 39.5
Nitab4.5_0001049g0060 Nicotiana tabacum HOM05D007575 ORTHO05D009611 3.7e-73 280.0 457 43.8
HPP92_002869 Vanilla planifolia HOM05D007575 ORTHO05D009611 5.9e-71 272.7 506 39.7
COL.COLO4_24385 Corchorus olitorius HOM05D001792 ORTHO05D001821 3.2e-69 266.9 547 38.9
Solyc09g098550.4 Solanum lycopersicum HOM05D007575 ORTHO05D009611 2.8e-65 253.8 462 40.3
Os11g0293900 Oryza sativa ssp. japonica HOM05D007575 ORTHO05D009611 9.1e-64 248.8 542 33.4
BcaNung07370 Brassica carinata HOM05D007575 ORTHO05D009611 2.2e-62 244.2 452 41.4
CARHR138270 Cardamine hirsuta HOM05D007575 ORTHO05D009611 2.2e-62 244.2 477 38.8
PSO210G6745 Papaver somniferum HOM05D007575 ORTHO05D009611 5.5e-61 239.6 559 32.4
PSO832G0541 Papaver somniferum HOM05D007575 ORTHO05D009611 4.2e-53 213.4 500 34.0
SEGI_13760 Sequoiadendron giganteum HOM05D007575 ORTHO05D009611 7.5e-42 176.0 402 33.6
Hma1.2p1_1477F.1_g285910 Hydrangea macrophylla HOM05D007575 ORTHO05D009611 1.5e-37 161.8 419 36.8
Pp3c20_2320 Physcomitrium patens HOM05D007575 ORTHO05D009611 1.3e-33 148.7 547 27.4
BcaB06g29288 Brassica carinata HOM05D007575 ORTHO05D009611 3.7e-33 147.1 128 56.2
Mapoly0164s0007 Marchantia polymorpha HOM05D007575 ORTHO05D009611 1.0e-30 139.0 492 27.4
CSS0007449 Camellia sinensis var. sinensis HOM05D007575 ORTHO05D009611 4.7e-28 130.2 352 34.1
Zm00001eb198990 Zea mays HOM05D007575 ORTHO05D009611 1.2e-26 125.6 218 37.6
Lsat_1_v5_gn_5_138981 Lactuca sativa HOM05D007575 ORTHO05D009611 6.4e-25 119.8 330 30.3
SalBow5G2148 Salvia bowleyana HOM05D007575 ORTHO05D009611 4.6e-23 113.6 177 41.8
SalBow5G4021 Salvia bowleyana HOM05D007575 ORTHO05D009611 4.6e-23 113.6 177 41.8
TAR633G1182 Trochodendron aralioides HOM05D007575 ORTHO05D009611 6.0e-23 113.2 168 42.9
Eucgr.A00051 Eucalyptus grandis HOM05D007575 ORTHO05D009611 3.0e-22 110.9 168 47.0
AagrBONN_evm.TU.Sc2ySwM_344.3290 Anthoceros agrestis HOM05D007575 ORTHO05D009611 3.9e-22 110.5 455 27.5
SMO116G0403 Selaginella moellendorffii HOM05D007575 ORTHO05D009611 4.3e-21 107.1 531 26.0
PGSC0003DMG400021612 Solanum tuberosum HOM05D007575 ORTHO05D009611 1.1e-16 92.4 78 57.7
SEGI_03248 Sequoiadendron giganteum HOM05D007575 ORTHO05D009611 3.6e-12 77.4 175 37.7
SEGI_16894 Sequoiadendron giganteum HOM05D002884 ORTHO05D003178 1.2e-07 62.4 109 36.7
Os08g0546400 Oryza sativa ssp. japonica HOM05D002884 ORTHO05D003178 3.5e-07 60.8 93 34.4
HPP92_022610 Vanilla planifolia HOM05D002884 ORTHO05D003178 4.6e-07 60.5 86 37.2
MD01G1050500 Malus domestica HOM05D002884 ORTHO05D003178 6.0e-07 60.1 112 33.0
Cc08_g14060 Coffea canephora HOM05D002884 ORTHO05D003178 1.0e-06 59.3 98 33.7
Cfa012110 Carpinus fangiana HOM05D002884 ORTHO05D003178 1.3e-06 58.9 93 34.4
Nn1g01376 Nelumbo nucifera HOM05D002884 ORTHO05D003178 1.7e-06 58.5 93 34.4
CBR_g123 Chara braunii HOM05D007575 ORTHO05D009611 2.3e-06 58.2 751 22.0
Gohir.A09G193001 Gossypium hirsutum HOM05D002884 ORTHO05D003178 2.3e-06 58.2 75 36.0
VMungo1215G1054 Vigna mungo HOM05D002884 ORTHO05D003178 2.3e-06 58.2 105 30.5
Zm00001eb198600 Zea mays HOM05D002884 ORTHO05D003178 2.3e-06 58.2 100 33.0
MBI04_g00304_MAGBIO Magnolia biondii HOM05D002884 ORTHO05D003178 3.9e-06 57.4 78 35.9
Manes.01G066200 Manihot esculenta HOM05D002884 ORTHO05D003178 3.9e-06 57.4 93 31.2
PSO782G3187 Papaver somniferum HOM05D002884 ORTHO05D003178 3.9e-06 57.4 93 32.3
Sc22g0000260 Simmondsia chinensis HOM05D002884 ORTHO05D003178 5.1e-06 57.0 105 29.5
PGSC0003DMG400003048 Solanum tuberosum HOM05D002884 ORTHO05D003178 5.1e-06 57.0 83 33.7
Aqoxy7G00426 Aquilegia oxysepala HOM05D002884 ORTHO05D003178 6.6e-06 56.6 93 33.3
FAN03G1671 Fragaria x ananassa HOM05D002884 ORTHO05D003178 6.6e-06 56.6 104 28.8
PSO478G0346 Papaver somniferum HOM05D002884 ORTHO05D003178 6.6e-06 56.6 93 32.3
MSTRG.12015 Avicennia marina HOM05D002884 ORTHO05D003178 8.7e-06 56.2 70 38.6
MELO3C014057.2 Cucumis melo HOM05D002884 ORTHO05D003178 8.7e-06 56.2 104 33.7
Nn6g34230 Nelumbo nucifera HOM05D002884 ORTHO05D003178 8.7e-06 56.2 88 33.0
Sc12g0005200 Simmondsia chinensis HOM05D002436 ORTHO05D002754 8.7e-06 56.2 82 34.1


User provided reference genes

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