Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG08G004030 Citrullus lanatus HOM05D002704 ORTHO05D002891 5.6e-83 311.2 199 100.0
Sed0000491 Sechium edule HOM05D002704 ORTHO05D002891 1.7e-50 203.4 203 65.5
CsaV3_6G003190 Cucumis sativus L. HOM05D002704 ORTHO05D002891 3.0e-44 182.6 206 58.3
Sed0010272 Sechium edule HOM05D002704 ORTHO05D002891 2.2e-39 166.4 168 65.5
COL.COLO4_24351 Corchorus olitorius HOM05D002704 ORTHO05D002891 3.7e-34 149.1 204 45.1
Sabra02G0176600 Salix brachista HOM05D002704 ORTHO05D002891 5.4e-33 145.2 201 46.3
Hma1.2p1_0429F.1_g151125 Hydrangea macrophylla HOM05D002704 ORTHO05D002891 9.1e-33 144.4 196 48.5
CiPaw.02G057300 Carya illinoinensis HOM05D002704 ORTHO05D002891 1.6e-32 143.7 204 48.0
Potri.014G150900 Populus trichocarpa HOM05D002704 ORTHO05D002891 1.6e-32 143.7 197 45.2
Prupe.1G182000 Prunus persica HOM05D002704 ORTHO05D002891 1.6e-32 143.7 189 46.6
Manes.04G050300 Manihot esculenta HOM05D002704 ORTHO05D002891 2.0e-32 143.3 210 51.9
Manes.11G114400 Manihot esculenta HOM05D002704 ORTHO05D002891 2.0e-32 143.3 201 47.3
Potri.002G231400 Populus trichocarpa HOM05D002704 ORTHO05D002891 3.5e-32 142.5 201 46.3
GSVIVG01013547001 Vitis vinifera HOM05D002704 ORTHO05D002891 3.5e-32 142.5 202 47.0
Dinv44226 Davidia involucrata HOM05D002704 ORTHO05D002891 2.2e-31 139.8 191 46.1
Thecc.04G181700 Theobroma cacao HOM05D002704 ORTHO05D002891 2.2e-31 139.8 188 45.2
CiPaw.01G106200 Carya illinoinensis HOM05D002704 ORTHO05D002891 8.5e-31 137.9 196 42.3
Atru.chr3.1657 Acer truncatum HOM05D002704 ORTHO05D002891 1.9e-30 136.7 151 52.3
QL10p046538 Quercus lobata HOM05D002704 ORTHO05D002891 3.2e-30 136.0 209 42.1
Gohir.A02G013402 Gossypium hirsutum HOM05D002704 ORTHO05D002891 7.2e-30 134.8 202 41.6
Cpa.g.c36743 Carica papaya HOM05D002704 ORTHO05D002891 2.1e-29 133.3 189 42.9
Gorai.005G017900 Gossypium raimondii HOM05D002704 ORTHO05D002891 6.1e-29 131.7 202 41.1
PGSC0003DMG400021617 Solanum tuberosum HOM05D002704 ORTHO05D002891 6.1e-29 131.7 199 41.2
Gohir.D02G014400 Gossypium hirsutum HOM05D002704 ORTHO05D002891 8.0e-29 131.3 218 39.9
Duzib151G0761 Durio zibethinus HOM05D002704 ORTHO05D002891 1.0e-28 131.0 204 41.7
Duzib268G0568 Durio zibethinus HOM05D002704 ORTHO05D002891 1.0e-28 131.0 190 43.2
Actinidia35890 Actinidia chinensis HOM05D002704 ORTHO05D002891 2.3e-28 129.8 194 43.3
Duzib268G0864 Durio zibethinus HOM05D002704 ORTHO05D002891 3.0e-28 129.4 189 41.8
CANSAT78G1882 Cannabis sativa HOM05D002704 ORTHO05D002891 5.2e-28 128.6 206 60.7
Peaxi162Scf00286g00244 Petunia axillaris HOM05D002704 ORTHO05D002891 2.0e-27 126.7 178 42.1
Actinidia17222 Actinidia chinensis HOM05D002704 ORTHO05D002891 2.6e-27 126.3 207 44.4
Ciclev10023373m.g Citrus clementina HOM05D002704 ORTHO05D002891 7.5e-27 124.8 220 40.5
Sopen09g036400 Solanum pennellii HOM05D002704 ORTHO05D002891 7.5e-27 124.8 147 46.9
Oeu007224.1 Olea europaea HOM05D002704 ORTHO05D002891 1.7e-26 123.6 140 44.3
Oeu007226.1 Olea europaea HOM05D002704 ORTHO05D002891 1.7e-26 123.6 140 44.3
Oeu006703.1 Olea europaea HOM05D002704 ORTHO05D002891 2.2e-26 123.2 185 40.0
PSO357G0625 Papaver somniferum HOM05D002704 ORTHO05D002891 8.3e-26 121.3 200 42.0
MSTRG.24593 Avicennia marina HOM05D002704 ORTHO05D002891 1.1e-25 120.9 134 49.3
Solyc09g098490.4 Solanum lycopersicum HOM05D001811 ORTHO05D001738 1.4e-25 120.6 172 41.3
CSS0004996 Camellia sinensis var. sinensis HOM05D002704 ORTHO05D002891 1.8e-25 120.2 195 41.0
Aqoxy2G04081 Aquilegia oxysepala HOM05D002704 ORTHO05D002891 2.4e-25 119.8 154 48.7
Aqoxy6G02333 Aquilegia oxysepala HOM05D002704 ORTHO05D002891 2.4e-25 119.8 154 48.7
CSS0030073 Camellia sinensis var. sinensis HOM05D002704 ORTHO05D002891 3.1e-25 119.4 195 41.0
HPP92_023705 Vanilla planifolia HOM05D002704 ORTHO05D002891 4.5e-24 115.5 209 36.8
Sabra15G0066300 Salix brachista HOM05D002704 ORTHO05D002891 5.9e-24 115.2 171 42.7
Os11g0294400 Oryza sativa ssp. japonica HOM05D002704 ORTHO05D002891 1.3e-23 114.0 161 42.9
TAR633G1006 Trochodendron aralioides HOM05D002704 ORTHO05D002891 1.3e-23 114.0 198 38.9
PSO170G1174 Papaver somniferum HOM05D002704 ORTHO05D002891 3.8e-23 112.5 200 43.0
Zm00001eb133700 Zea mays HOM05D002704 ORTHO05D002891 1.5e-22 110.5 150 46.7
Zm00001eb411630 Zea mays HOM05D002704 ORTHO05D002891 2.1e-21 106.7 134 50.0
SalBow6G4869 Salvia bowleyana HOM05D002704 ORTHO05D002891 2.8e-21 106.3 140 43.6
Zm00001eb199020 Zea mays HOM05D002704 ORTHO05D002891 1.4e-20 104.0 164 43.3
Dinv22667 Davidia involucrata HOM05D002704 ORTHO05D002891 4.4e-19 99.0 96 52.1
MBI08_g28697_MAGBIO Magnolia biondii HOM05D002704 ORTHO05D002891 6.4e-18 95.1 191 37.2
Peaxi162Scf00378g00084 Petunia axillaris HOM05D002704 ORTHO05D002891 2.0e-16 90.1 173 36.4
MELO3C030199.2 Cucumis melo HOM05D002704 ORTHO05D002891 7.8e-16 88.2 80 66.2
CDE08G0150 Ceratophyllum demersum HOM05D002704 ORTHO05D002891 1.0e-15 87.8 131 39.7
SEGI_04164 Sequoiadendron giganteum HOM05D002704 ORTHO05D002891 3.9e-15 85.9 145 35.9
ATR0782G003 Amborella trichopoda HOM05D002704 ORTHO05D002891 8.6e-15 84.7 139 35.3
FvH4_5g37370 Fragaria vesca HOM05D002704 ORTHO05D002891 1.6e-13 80.5 139 32.4
FAN08G2281 Fragaria x ananassa HOM05D002704 ORTHO05D002891 1.6e-13 80.5 139 32.4
FAN13G2774 Fragaria x ananassa HOM05D002704 ORTHO05D002891 1.6e-13 80.5 139 32.4
MELO3C003450.2 Cucumis melo HOM05D002704 ORTHO05D002891 2.1e-13 80.1 148 32.4
CDE10G0971 Ceratophyllum demersum HOM05D002704 ORTHO05D002891 8.0e-13 78.2 133 33.8
CDE10G0994 Ceratophyllum demersum HOM05D002704 ORTHO05D002891 1.1e-12 77.8 133 33.8
FAN18G1803 Fragaria x ananassa HOM05D002704 ORTHO05D002891 1.1e-12 77.8 139 31.7
Os12g0233100 Oryza sativa ssp. japonica HOM05D002704 ORTHO05D002891 1.4e-12 77.4 137 47.4
ClCG11G015290 Citrullus lanatus HOM05D002704 ORTHO05D002891 2.3e-12 76.6 157 31.8
FAN04G1068 Fragaria x ananassa HOM05D002704 ORTHO05D002891 2.3e-12 76.6 139 31.7
EL10Ac1g01225 Beta vulgaris HOM05D002704 ORTHO05D002891 3.1e-12 76.3 159 36.5
MBI05_g19349_MAGBIO Magnolia biondii HOM05D002704 ORTHO05D002891 3.1e-12 76.3 159 28.9
CsaV3_3G048710 Cucumis sativus L. HOM05D002704 ORTHO05D002891 5.2e-12 75.5 150 32.0
Sed0024849 Sechium edule HOM05D002704 ORTHO05D002891 5.2e-12 75.5 132 34.1
SEGI_20858 Sequoiadendron giganteum HOM05D002704 ORTHO05D002891 5.2e-12 75.5 127 32.3
Ciclev10002416m.g Citrus clementina HOM05D002704 ORTHO05D002891 6.8e-12 75.1 173 30.1
SGA_v2.0_scaffold31G12567 Striga asiatica HOM05D002704 ORTHO05D002891 6.8e-12 75.1 47 68.1
RcHm_v2.0_Chr4g0408971 Rosa chinensis HOM05D002704 ORTHO05D002891 1.2e-11 74.3 123 39.8
HPP92_019307 Vanilla planifolia HOM05D002704 ORTHO05D002891 1.2e-11 74.3 127 30.7
RcHm_v2.0_Chr7g0239041 Rosa chinensis HOM05D002704 ORTHO05D002891 1.5e-11 73.9 138 31.2
TWI56G1046 Tripterygium wilfordii HOM05D002704 ORTHO05D002891 1.5e-11 73.9 135 34.1
TWI12G0499 Tripterygium wilfordii HOM05D002704 ORTHO05D002891 2.0e-11 73.6 137 34.3
ClCG08G011070 Citrullus lanatus HOM05D002704 ORTHO05D002891 3.4e-11 72.8 154 30.5
GSVIVG01009025001 Vitis vinifera HOM05D002704 ORTHO05D002891 4.4e-11 72.4 151 29.8
Lsat_1_v5_gn_9_41620 Lactuca sativa HOM05D002704 ORTHO05D002891 5.8e-11 72.0 207 28.0
MBI11_g35640_MAGBIO Magnolia biondii HOM05D002704 ORTHO05D002891 7.5e-11 71.6 121 39.7
HPP92_011170 Vanilla planifolia HOM05D002704 ORTHO05D002891 7.5e-11 71.6 123 30.9
Aqoxy6G00791 Aquilegia oxysepala HOM05D002704 ORTHO05D002891 1.3e-10 70.9 152 29.6
Sed0023198 Sechium edule HOM05D002704 ORTHO05D002891 1.3e-10 70.9 141 33.3
Hund16912 Selenicereus undatus HOM05D002704 ORTHO05D002891 1.7e-10 70.5 144 29.2
PSO447G0371 Papaver somniferum HOM05D002704 ORTHO05D002891 2.9e-10 69.7 151 30.5
CsaV3_2G029650 Cucumis sativus L. HOM05D002704 ORTHO05D002891 3.7e-10 69.3 151 29.1
Manes.02G153000 Manihot esculenta HOM05D002704 ORTHO05D002891 3.7e-10 69.3 165 27.9
TAR628G0302 Trochodendron aralioides HOM05D002704 ORTHO05D002891 3.7e-10 69.3 154 29.9
PSO210G1059 Papaver somniferum HOM05D002704 ORTHO05D002891 4.9e-10 68.9 149 30.9
Sed0020547 Sechium edule HOM05D002704 ORTHO05D002891 4.9e-10 68.9 143 29.4
MD08G1182400 Malus domestica HOM05D002704 ORTHO05D002891 8.3e-10 68.2 161 29.2
MD15G1368100 Malus domestica HOM05D002704 ORTHO05D002891 8.3e-10 68.2 151 29.1
AUR62027750 Chenopodium quinoa HOM05D002704 ORTHO05D002891 1.1e-09 67.8 166 35.5
Atru.chr13.1197 Acer truncatum HOM05D002704 ORTHO05D002891 1.4e-09 67.4 171 27.5
MELO3C011023.2 Cucumis melo HOM05D002704 ORTHO05D002891 1.4e-09 67.4 154 31.8
AUR62038516 Chenopodium quinoa HOM05D002704 ORTHO05D002891 1.9e-09 67.0 167 34.7
Hund26960 Selenicereus undatus HOM05D002704 ORTHO05D002891 1.9e-09 67.0 158 25.9
TAR381G1126 Trochodendron aralioides HOM05D002704 ORTHO05D002891 1.9e-09 67.0 166 30.1
Ah.05g170030 Amaranthus hybridus HOM05D002704 ORTHO05D002891 4.1e-09 65.9 157 27.4
CiPaw.08G044800 Carya illinoinensis HOM05D002704 ORTHO05D002891 4.1e-09 65.9 167 27.5
Haze_22261 Corylus avellana HOM05D002704 ORTHO05D002891 4.1e-09 65.9 212 25.0
CDE04G0076 Ceratophyllum demersum HOM05D002704 ORTHO05D002891 5.4e-09 65.5 156 28.2
Duzib093G0662 Durio zibethinus HOM05D002704 ORTHO05D002891 7.0e-09 65.1 148 26.4
Potri.005G165300 Populus trichocarpa HOM05D002704 ORTHO05D002891 7.0e-09 65.1 163 27.0
Cpa.g.sc36.127 Carica papaya HOM05D002704 ORTHO05D002891 9.2e-09 64.7 160 26.2
Gorai.009G237500 Gossypium raimondii HOM05D002704 ORTHO05D002891 9.2e-09 64.7 230 25.7
Potri.002G096100 Populus trichocarpa HOM05D002704 ORTHO05D002891 1.6e-08 63.9 154 35.7
TAR625G1386 Trochodendron aralioides HOM05D002704 ORTHO05D002891 1.6e-08 63.9 159 42.1
CAN.G101.15 Capsicum annuum HOM05D002704 ORTHO05D002891 2.0e-08 63.5 145 28.3
Sc23g0000210 Simmondsia chinensis HOM05D002704 ORTHO05D002891 2.0e-08 63.5 151 25.8
Oeu012923.1 Olea europaea HOM05D002704 ORTHO05D002891 2.7e-08 63.2 156 27.6
Dinv44770 Davidia involucrata HOM05D002704 ORTHO05D002891 3.5e-08 62.8 159 27.0
Gohir.A05G226700 Gossypium hirsutum HOM05D002704 ORTHO05D002891 3.5e-08 62.8 201 25.4
Actinidia10319 Actinidia chinensis HOM05D002704 ORTHO05D002891 4.6e-08 62.4 150 29.3
Gohir.D05G229400 Gossypium hirsutum HOM05D002704 ORTHO05D002891 6.0e-08 62.0 230 25.2
Nn5g30117 Nelumbo nucifera HOM05D002704 ORTHO05D002891 6.0e-08 62.0 157 28.0
Peaxi162Scf00041g00165 Petunia axillaris HOM05D002704 ORTHO05D002891 6.0e-08 62.0 150 28.7
Sabra02G0075700 Salix brachista HOM05D002704 ORTHO05D002891 6.0e-08 62.0 154 27.3
Solyc04g074080.3 Solanum lycopersicum HOM05D002704 ORTHO05D002891 6.0e-08 62.0 144 25.7
Duzib116G0617 Durio zibethinus HOM05D002704 ORTHO05D002891 7.8e-08 61.6 165 25.5
Nn1g05351 Nelumbo nucifera HOM05D002704 ORTHO05D002891 7.8e-08 61.6 169 29.0
PGSC0003DMG400006402 Solanum tuberosum HOM05D002704 ORTHO05D002891 7.8e-08 61.6 150 29.3
Thecc.08G107400 Theobroma cacao HOM05D002704 ORTHO05D002891 7.8e-08 61.6 165 25.5
Zm00001eb006930 Zea mays HOM05D002704 ORTHO05D002891 7.8e-08 61.6 150 28.0
Actinidia27183 Actinidia chinensis HOM05D002704 ORTHO05D002891 1.0e-07 61.2 156 31.4
Manes.18G067800 Manihot esculenta HOM05D002704 ORTHO05D002891 1.0e-07 61.2 172 26.7
Sc01g0000430 Simmondsia chinensis HOM05D002704 ORTHO05D002891 1.0e-07 61.2 152 33.6
Cc10_g07250 Coffea canephora HOM05D002704 ORTHO05D002891 1.3e-07 60.8 182 34.1
Eucgr.B00020 Eucalyptus grandis HOM05D002704 ORTHO05D002891 1.3e-07 60.8 154 27.9
Dinv14325 Davidia involucrata HOM05D002704 ORTHO05D002891 1.7e-07 60.5 169 29.6
Lj4C103T16 Lonicera japonica HOM05D002704 ORTHO05D002891 1.7e-07 60.5 156 30.8
Nitab4.5_0000232g0230 Nicotiana tabacum HOM05D002704 ORTHO05D002891 1.7e-07 60.5 158 27.8
Prupe.1G516300 Prunus persica HOM05D002704 ORTHO05D002891 1.7e-07 60.5 166 26.5
vmacro21275 Vaccinium macrocarpon HOM05D002704 ORTHO05D002891 1.7e-07 60.5 157 42.0
Duzib041G0800 Durio zibethinus HOM05D002704 ORTHO05D002891 2.3e-07 60.1 150 25.3
Gohir.A02G076100 Gossypium hirsutum HOM05D002704 ORTHO05D002891 2.3e-07 60.1 156 29.5
Nitab4.5_0005777g0010 Nicotiana tabacum HOM05D002704 ORTHO05D002891 2.3e-07 60.1 153 28.8
QL12p036715 Quercus lobata HOM05D002704 ORTHO05D002891 2.3e-07 60.1 156 26.9
DCAR_029361 Daucus carota HOM05D002704 ORTHO05D002891 3.0e-07 59.7 137 29.2
CSS0027836 Camellia sinensis var. sinensis HOM05D002704 ORTHO05D002891 3.9e-07 59.3 162 25.9
HanXRQChr15g0491861 Helianthus annuus HOM05D002704 ORTHO05D002891 3.9e-07 59.3 159 26.4
Eucgr.F02409 Eucalyptus grandis HOM05D002704 ORTHO05D002891 6.6e-07 58.5 155 27.1
COL.COLO4_16406 Corchorus olitorius HOM05D002704 ORTHO05D002891 8.6e-07 58.2 196 23.0
Hma1.2p1_0237F.1_g099460 Hydrangea macrophylla HOM05D002704 ORTHO05D002891 1.1e-06 57.8 157 26.1
Zm00001eb401340 Zea mays HOM05D002704 ORTHO05D002891 1.1e-06 57.8 154 27.3
Gorai.005G094000 Gossypium raimondii HOM05D002704 ORTHO05D002891 1.5e-06 57.4 150 28.7
Nitab4.5_0000421g0060 Nicotiana tabacum HOM05D002704 ORTHO05D002891 1.9e-06 57.0 150 27.3
Gohir.D02G083400 Gossypium hirsutum HOM05D002704 ORTHO05D002891 2.5e-06 56.6 157 28.0
Oeu046295.1 Olea europaea HOM05D002704 ORTHO05D002891 9.5e-06 54.7 143 28.7


User provided reference genes

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