Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG08G003780 Citrullus lanatus HOM05D005211 ORTHO05D006148 1.6e-74 282.7 147 100.0
MELO3C026134.2 Cucumis melo HOM05D005211 ORTHO05D006148 2.0e-48 196.1 150 74.0
Sed0015684 Sechium edule HOM05D005211 ORTHO05D006148 7.2e-43 177.6 160 65.0
CsaV3_6G003020 Cucumis sativus L. HOM05D005211 ORTHO05D006148 8.0e-34 147.5 98 77.6
QL10p044103 Quercus lobata HOM05D005211 ORTHO05D006148 7.2e-27 124.4 154 46.8
RcHm_v2.0_Chr4g0409781 Rosa chinensis HOM05D005211 ORTHO05D006148 8.8e-25 117.5 153 48.4
FAN07G0144 Fragaria x ananassa HOM05D005211 ORTHO05D006148 9.8e-24 114.0 154 46.8
FAN22G0070 Fragaria x ananassa HOM05D005211 ORTHO05D006148 9.8e-24 114.0 155 46.5
FAN12G3367 Fragaria x ananassa HOM05D005211 ORTHO05D006148 2.8e-23 112.5 154 46.1
FAN12G0052 Fragaria x ananassa HOM05D005211 ORTHO05D006148 8.3e-23 110.9 154 45.5
Cfa008551 Carpinus fangiana HOM05D005211 ORTHO05D006148 2.4e-22 109.4 149 45.0
Sabra14G0113200 Salix brachista HOM05D005211 ORTHO05D006148 5.4e-22 108.2 160 45.0
Haze_11077 Corylus avellana HOM05D005211 ORTHO05D006148 2.0e-21 106.3 123 47.2
Manes.11G114000 Manihot esculenta HOM05D005211 ORTHO05D006148 3.5e-21 105.5 143 45.5
Potri.002G232500 Populus trichocarpa HOM05D005211 ORTHO05D006148 3.5e-21 105.5 159 42.8
Potri.014G149800 Populus trichocarpa HOM05D005211 ORTHO05D006148 7.7e-21 104.4 163 42.9
CiPaw.01G108100 Carya illinoinensis HOM05D005211 ORTHO05D006148 1.7e-20 103.2 145 42.1
Prupe.1G178500 Prunus persica HOM05D005211 ORTHO05D006148 1.7e-20 103.2 154 42.9
Sabra02G0177300 Salix brachista HOM05D005211 ORTHO05D006148 3.8e-20 102.1 160 42.5
Eucgr.H00442 Eucalyptus grandis HOM05D005211 ORTHO05D006148 1.5e-19 100.1 156 41.0
TAR636G0814 Trochodendron aralioides HOM05D005211 ORTHO05D006148 1.5e-19 100.1 146 40.4
TAR365G0119 Trochodendron aralioides HOM05D005211 ORTHO05D006148 2.5e-19 99.4 146 41.8
FAN22G0040 Fragaria x ananassa HOM05D005211 ORTHO05D006148 9.5e-19 97.4 103 53.4
CiPaw.02G059600 Carya illinoinensis HOM05D005211 ORTHO05D006148 2.1e-18 96.3 144 41.0
TAR633G2277 Trochodendron aralioides HOM05D005211 ORTHO05D006148 2.8e-18 95.9 144 44.4
Hma1.2p1_0412F.1_g147140 Hydrangea macrophylla HOM05D005211 ORTHO05D006148 3.6e-18 95.5 111 49.5
Nn1g08305 Nelumbo nucifera HOM05D005211 ORTHO05D006148 6.1e-18 94.7 153 39.9
Gohir.D07G203100 Gossypium hirsutum HOM05D005211 ORTHO05D006148 2.3e-17 92.8 161 40.4
Gorai.001G228500 Gossypium raimondii HOM05D005211 ORTHO05D006148 2.3e-17 92.8 161 40.4
PGR142G0694 Punica granatum HOM05D005211 ORTHO05D006148 2.3e-17 92.8 169 39.1
Gohir.A07G196700 Gossypium hirsutum HOM05D005211 ORTHO05D006148 3.0e-17 92.4 161 39.8
HPP92_023344 Vanilla planifolia HOM05D005211 ORTHO05D006148 4.0e-17 92.0 122 43.4
Oeu003658.1 Olea europaea HOM05D005211 ORTHO05D006148 1.2e-16 90.5 149 39.6
Sc17g0001650 Simmondsia chinensis HOM05D005211 ORTHO05D006148 1.5e-16 90.1 124 46.8
Duzib133G1390 Durio zibethinus HOM05D005211 ORTHO05D006148 2.6e-16 89.4 164 37.8
TWI36G1602 Tripterygium wilfordii HOM05D005211 ORTHO05D006148 2.6e-16 89.4 139 42.4
CANSAT78G0009 Cannabis sativa HOM05D005211 ORTHO05D006148 5.7e-16 88.2 171 36.8
Eucgr.H00724 Eucalyptus grandis HOM05D005211 ORTHO05D006148 5.7e-16 88.2 159 38.4
Prupe.8G190100 Prunus persica HOM05D005211 ORTHO05D006148 5.7e-16 88.2 147 38.8
MD05G1158800 Malus domestica HOM05D005211 ORTHO05D006148 7.5e-16 87.8 127 41.7
Cpa.g.sc8.70 Carica papaya HOM05D005211 ORTHO05D006148 9.8e-16 87.4 156 40.4
RcHm_v2.0_Chr6g0282791 Rosa chinensis HOM05D005211 ORTHO05D006148 9.8e-16 87.4 163 39.3
Lsat_1_v5_gn_5_178301 Lactuca sativa HOM05D005211 ORTHO05D006148 1.3e-15 87.0 174 35.1
PGSC0003DMG400005560 Solanum tuberosum HOM05D005211 ORTHO05D006148 1.7e-15 86.7 130 41.5
Cc01_g16110 Coffea canephora HOM05D005211 ORTHO05D006148 2.8e-15 85.9 136 39.7
SGA_v2.0_scaffold77G25295 Striga asiatica HOM05D005211 ORTHO05D006148 3.7e-15 85.5 140 40.0
Oeu057829.1 Olea europaea HOM05D005211 ORTHO05D006148 4.9e-15 85.1 138 37.7
MBI07_g35368_MAGBIO Magnolia biondii HOM05D005211 ORTHO05D006148 6.3e-15 84.7 132 42.4
MD10G1151700 Malus domestica HOM05D005211 ORTHO05D006148 6.3e-15 84.7 126 39.7
Oeu013415.1 Olea europaea HOM05D005211 ORTHO05D006148 8.3e-15 84.3 139 38.1
COL.COLO4_26568 Corchorus olitorius HOM05D005211 ORTHO05D006148 1.1e-14 84.0 154 37.7
Lj2P1117T13 Lonicera japonica HOM05D005211 ORTHO05D006148 2.4e-14 82.8 142 36.6
RcHm_v2.0_Chr6g0282781 Rosa chinensis HOM05D005211 ORTHO05D006148 3.1e-14 82.4 165 33.9
Aqoxy2G03955 Aquilegia oxysepala HOM05D005211 ORTHO05D006148 5.4e-14 81.6 149 36.2
Duzib138G1875 Durio zibethinus HOM05D005211 ORTHO05D006148 5.4e-14 81.6 164 37.8
Manes.13G054600 Manihot esculenta HOM05D005211 ORTHO05D006148 5.4e-14 81.6 161 34.8
EL10Ac5g10623 Beta vulgaris HOM05D005211 ORTHO05D006148 7.0e-14 81.3 159 37.1
CSS0012153 Camellia sinensis var. sinensis HOM05D005211 ORTHO05D006148 7.0e-14 81.3 142 40.1
CSS0028586 Camellia sinensis var. sinensis HOM05D005211 ORTHO05D006148 7.0e-14 81.3 142 40.1
FAN24G0649 Fragaria x ananassa HOM05D005211 ORTHO05D006148 7.0e-14 81.3 165 37.6
PGR083G0764 Punica granatum HOM05D005211 ORTHO05D006148 7.0e-14 81.3 154 36.4
FAN27G2625 Fragaria x ananassa HOM05D005211 ORTHO05D006148 9.2e-14 80.9 165 37.6
PSO675G5714 Papaver somniferum HOM05D005211 ORTHO05D006148 9.2e-14 80.9 163 36.8
CiPaw.13G055500 Carya illinoinensis HOM05D005211 ORTHO05D006148 1.2e-13 80.5 147 39.5
TWI18G0981 Tripterygium wilfordii HOM05D005211 ORTHO05D006148 1.2e-13 80.5 151 39.1
unitig_0.g414 Utricularia gibba HOM05D005211 ORTHO05D006148 1.2e-13 80.5 131 39.7
Migut.N00665 Erythranthe guttata HOM05D005211 ORTHO05D006148 1.6e-13 80.1 135 37.8
ATR0686G247 Amborella trichopoda HOM05D005211 ORTHO05D006148 3.5e-13 79.0 141 39.7
FAN15G0641 Fragaria x ananassa HOM05D005211 ORTHO05D006148 3.5e-13 79.0 154 37.0
Gohir.A11G142700 Gossypium hirsutum HOM05D005211 ORTHO05D006148 3.5e-13 79.0 168 36.3
Manes.12G059000 Manihot esculenta HOM05D005211 ORTHO05D006148 3.5e-13 79.0 118 40.7
FAN27G1389 Fragaria x ananassa HOM05D005211 ORTHO05D006148 4.5e-13 78.6 161 37.3
QL93p0263_0042 Quercus lobata HOM05D005211 ORTHO05D006148 5.9e-13 78.2 148 39.9
Solyc12g042010.1 Solanum lycopersicum HOM05D005211 ORTHO05D006148 7.8e-13 77.8 135 40.0
Duzib211G0461 Durio zibethinus HOM05D005211 ORTHO05D006148 1.0e-12 77.4 163 36.8
FvH4_2g17750 Fragaria vesca HOM05D005211 ORTHO05D006148 1.0e-12 77.4 154 34.4
FAN24G3081 Fragaria x ananassa HOM05D005211 ORTHO05D006148 1.0e-12 77.4 154 34.4
MD10G1151600 Malus domestica HOM05D005211 ORTHO05D006148 1.0e-12 77.4 175 33.7
Gohir.D11G149000 Gossypium hirsutum HOM05D005211 ORTHO05D006148 1.7e-12 76.6 168 35.7
Actinidia23357 Actinidia chinensis HOM05D005211 ORTHO05D006148 2.3e-12 76.3 133 37.6
Gorai.007G159800 Gossypium raimondii HOM05D005211 ORTHO05D006148 2.3e-12 76.3 168 35.1
Oeu049588.1 Olea europaea HOM05D005211 ORTHO05D006148 2.3e-12 76.3 97 43.3
CDE07G0882 Ceratophyllum demersum HOM05D005211 ORTHO05D006148 3.8e-12 75.5 145 36.6
Ciclev10016996m.g Citrus clementina HOM05D005211 ORTHO05D006148 3.8e-12 75.5 158 33.5
TWI63G1319 Tripterygium wilfordii HOM05D005211 ORTHO05D006148 8.6e-12 74.3 137 37.2
Sopen09g012960 Solanum pennellii HOM05D005211 ORTHO05D006148 1.1e-11 73.9 102 43.1
Thecc.01G210700 Theobroma cacao HOM05D005211 ORTHO05D006148 1.1e-11 73.9 150 36.7
Lj1P101T27 Lonicera japonica HOM05D005211 ORTHO05D006148 1.5e-11 73.6 142 37.3
vmacro02818 Vaccinium macrocarpon HOM05D005211 ORTHO05D006148 1.5e-11 73.6 162 34.0
FvH4_2g17760 Fragaria vesca HOM05D005211 ORTHO05D006148 2.5e-11 72.8 158 36.1
Aa31LG1G24830 Aethionema arabicum HOM05D005211 ORTHO05D006148 3.3e-11 72.4 130 40.8
MD05G1158700 Malus domestica HOM05D005211 ORTHO05D006148 4.3e-11 72.0 151 32.5
unitig_52.g17443 Utricularia gibba HOM05D005211 ORTHO05D006148 4.3e-11 72.0 133 41.4
Dinv28809 Davidia involucrata HOM05D005211 ORTHO05D006148 5.6e-11 71.6 145 33.8
Os04g0660100 Oryza sativa ssp. japonica HOM05D005211 ORTHO05D006148 7.3e-11 71.2 165 35.2
CDE04G3135 Ceratophyllum demersum HOM05D005211 ORTHO05D006148 9.5e-11 70.9 144 36.1
CDE02G4090 Ceratophyllum demersum HOM05D005211 ORTHO05D006148 1.2e-10 70.5 143 35.0
ECA247G2119 Erigeron canadensis HOM05D005211 ORTHO05D006148 1.2e-10 70.5 115 38.3
DCAR_004769 Daucus carota HOM05D005211 ORTHO05D006148 2.1e-10 69.7 137 35.8
Migut.D00738 Erythranthe guttata HOM05D005211 ORTHO05D006148 4.7e-10 68.6 160 35.6
Prupe.8G190000 Prunus persica HOM05D005211 ORTHO05D006148 4.7e-10 68.6 145 34.5
CANSAT01G0934 Cannabis sativa HOM05D005211 ORTHO05D006148 6.1e-10 68.2 165 31.5
CDE09G1368 Ceratophyllum demersum HOM05D005211 ORTHO05D006148 6.1e-10 68.2 137 36.5
Zm00001eb432720 Zea mays HOM05D005211 ORTHO05D006148 6.1e-10 68.2 163 33.1
Actinidia30014 Actinidia chinensis HOM05D005211 ORTHO05D006148 1.0e-09 67.4 89 40.4
CiPaw.14G044000 Carya illinoinensis HOM05D005211 ORTHO05D006148 1.0e-09 67.4 146 35.6
QL09p046680 Quercus lobata HOM05D005211 ORTHO05D006148 1.0e-09 67.4 140 37.9
Sp4g25190 Schrenkiella parvula HOM05D005211 ORTHO05D006148 1.0e-09 67.4 134 39.6
AL4G41710 Arabidopsis lyrata HOM05D005211 ORTHO05D006148 1.4e-09 67.0 135 40.7
Carub.0004s2554 Capsella rubella HOM05D005211 ORTHO05D006148 1.4e-09 67.0 131 40.5
Gohir.D07G167400 Gossypium hirsutum HOM05D005211 ORTHO05D006148 1.4e-09 67.0 102 40.2
BNapus_Darmor_BZH_scaffold_64p00090 Brassica napus HOM05D005211 ORTHO05D006148 1.8e-09 66.6 132 40.9
BraA04t18707Z Brassica rapa HOM05D005211 ORTHO05D006148 1.8e-09 66.6 132 40.9
BcaNung03535 Brassica carinata HOM05D005211 ORTHO05D006148 2.3e-09 66.2 133 36.8
Rhsim13G0052900 Rhododendron simsii HOM05D005211 ORTHO05D006148 2.3e-09 66.2 108 38.0
Hma1.2p1_0959F.1_g241620 Hydrangea macrophylla HOM05D005211 ORTHO05D006148 3.1e-09 65.9 109 38.5
THA.LOC104803428 Tarenaya hassleriana HOM05D005211 ORTHO05D006148 3.1e-09 65.9 137 35.8
BcaB06g29284 Brassica carinata HOM05D005211 ORTHO05D006148 6.8e-09 64.7 130 38.5
BcaB06g29285 Brassica carinata HOM05D005211 ORTHO05D006148 6.8e-09 64.7 130 38.5
Thhalv10017615m.g Eutrema salsugineum HOM05D005211 ORTHO05D006148 8.9e-09 64.3 126 38.1
THA.LOC104802290 Tarenaya hassleriana HOM05D005211 ORTHO05D006148 8.9e-09 64.3 151 36.4
AT2G43060 Arabidopsis thaliana HOM05D005211 ORTHO05D006148 1.2e-08 63.9 132 38.6
CARHR138130 Cardamine hirsuta HOM05D005211 ORTHO05D006148 1.2e-08 63.9 138 36.2
Peaxi162Scf00335g00067 Petunia axillaris HOM05D005211 ORTHO05D006148 1.2e-08 63.9 84 42.9
AUR62028696 Chenopodium quinoa HOM05D005211 ORTHO05D006148 1.5e-08 63.5 147 35.4
A05p03550 Brassica napus HOM05D005211 ORTHO05D006148 7.5e-08 61.2 131 36.6
BraA05t19341Z Brassica rapa HOM05D005211 ORTHO05D006148 7.5e-08 61.2 131 36.6
Nitab4.5_0004516g0010 Nicotiana tabacum HOM05D005211 ORTHO05D006148 7.5e-08 61.2 81 42.0
FAN15G2376 Fragaria x ananassa HOM05D005211 ORTHO05D006148 1.3e-07 60.5 100 39.0
C04p70060 Brassica napus HOM05D005211 ORTHO05D006148 2.9e-07 59.3 124 36.3
BolC4t28506H Brassica oleracea HOM05D005211 ORTHO05D006148 2.9e-07 59.3 124 36.3
C04p04120 Brassica napus HOM05D005211 ORTHO05D006148 3.7e-07 58.9 130 36.2
HanXRQChr01g0007251 Helianthus annuus HOM05D005211 ORTHO05D006148 3.7e-07 58.9 158 29.7
BcaC02g12418 Brassica carinata HOM05D005211 ORTHO05D006148 4.9e-07 58.5 131 35.1
BolC4t22051H Brassica oleracea HOM05D005211 ORTHO05D006148 4.9e-07 58.5 131 35.1
Dinv44235 Davidia involucrata HOM05D005211 ORTHO05D006148 8.3e-07 57.8 67 50.7
Atru.chr6.3543 Acer truncatum HOM05D005211 ORTHO05D006148 1.4e-06 57.0 144 32.6


User provided reference genes

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