Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG08G003660 Citrullus lanatus HOM05D005651 ORTHO05D006877 0.0e+00 2605.9 1319 100.0
Sed0004152 Sechium edule HOM05D005651 ORTHO05D006877 0.0e+00 2059.3 1276 81.2
CsaV3_6G003070 Cucumis sativus L. HOM05D005651 ORTHO05D006877 0.0e+00 1946.0 1122 87.3
RcHm_v2.0_Chr4g0412511 Rosa chinensis HOM05D005651 ORTHO05D006877 0.0e+00 1369.4 1307 56.5
RcHm_v2.0_Chr4g0412451 Rosa chinensis HOM05D005651 ORTHO05D006877 0.0e+00 1365.5 1311 56.5
MELO3C026127.2 Cucumis melo HOM05D005651 ORTHO05D006877 0.0e+00 1343.9 789 86.2
FAN12G2514 Fragaria x ananassa HOM05D005651 ORTHO05D006877 0.0e+00 1337.4 1302 55.3
FvH4_4g12860 Fragaria vesca HOM05D005651 ORTHO05D006877 0.0e+00 1335.9 1286 55.8
FAN17G0433 Fragaria x ananassa HOM05D005651 ORTHO05D006877 0.0e+00 1332.8 1306 55.1
Prupe.1G172400 Prunus persica HOM05D005651 ORTHO05D006877 0.0e+00 1318.1 1294 55.5
TAR362G0451 Trochodendron aralioides HOM05D005651 ORTHO05D006877 0.0e+00 1310.4 1328 53.8
Actinidia13837 Actinidia chinensis HOM05D005651 ORTHO05D006877 0.0e+00 1303.9 1287 54.6
MD04G1022200 Malus domestica HOM05D005651 ORTHO05D006877 0.0e+00 1300.4 1316 53.6
GSVIVG01031569001 Vitis vinifera HOM05D005651 ORTHO05D006877 0.0e+00 1282.3 1287 53.7
Haze_11684 Corylus avellana HOM05D005651 ORTHO05D006877 0.0e+00 1280.0 1416 50.4
QL06p027298 Quercus lobata HOM05D005651 ORTHO05D006877 0.0e+00 1266.9 1306 53.9
Thecc.04G191000 Theobroma cacao HOM05D005651 ORTHO05D006877 0.0e+00 1236.9 1296 51.8
Cpa.g.sc157.13 Carica papaya HOM05D005651 ORTHO05D006877 0.0e+00 1234.9 1306 51.8
CANSAT78G1330 Cannabis sativa HOM05D005651 ORTHO05D006877 0.0e+00 1232.2 1281 53.2
FAN07G2778 Fragaria x ananassa HOM05D005651 ORTHO05D006877 0.0e+00 1228.4 1161 56.5
COL.COLO4_35960 Corchorus olitorius HOM05D005651 ORTHO05D006877 0.0e+00 1220.3 1286 51.2
Ciclev10004169m.g Citrus clementina HOM05D005651 ORTHO05D006877 0.0e+00 1214.1 1301 51.8
Gohir.D02G018500 Gossypium hirsutum HOM05D005651 ORTHO05D006877 0.0e+00 1204.9 1288 51.0
Glyma.11G253600 Glycine max HOM05D005651 ORTHO05D006877 0.0e+00 1195.3 1285 50.4
TPR.G18109 Trifolium pratense HOM05D005651 ORTHO05D006877 0.0e+00 1194.9 1290 49.9
Gohir.A02G016900 Gossypium hirsutum HOM05D005651 ORTHO05D006877 0.0e+00 1191.0 1297 50.3
Lj6g0020014 Lotus japonicus HOM05D005651 ORTHO05D006877 0.0e+00 1190.6 1286 50.7
Potri.002G232700 Populus trichocarpa HOM05D005651 ORTHO05D006877 0.0e+00 1189.5 1264 51.7
Gorai.005G022800 Gossypium raimondii HOM05D005651 ORTHO05D006877 0.0e+00 1187.6 1288 50.5
Sabra02G0177500 Salix brachista HOM05D005651 ORTHO05D006877 0.0e+00 1184.9 1265 51.3
VMungo1383G2894 Vigna mungo HOM05D005651 ORTHO05D006877 0.0e+00 1174.8 1287 49.3
Medtr3g084640 Medicago truncatula HOM05D005651 ORTHO05D006877 0.0e+00 1168.3 1300 49.4
Ca_16431_v3 Cicer arietinum L. HOM05D005651 ORTHO05D006877 0.0e+00 1165.2 1301 49.3
PGR083G1656 Punica granatum HOM05D005651 ORTHO05D006877 0.0e+00 1164.8 1292 49.7
AT4G14180 Arabidopsis thaliana HOM05D005651 ORTHO05D006877 0.0e+00 1154.8 1306 46.8
arahy.Tifrunner.gnm1.ann1.RD9PAU Arachis hypogaea HOM05D005651 ORTHO05D006877 0.0e+00 1153.7 1302 48.7
THA.LOC104808673 Tarenaya hassleriana HOM05D005651 ORTHO05D006877 0.0e+00 1148.3 1283 48.1
Aqoxy2G04074 Aquilegia oxysepala HOM05D005651 ORTHO05D006877 0.0e+00 1145.6 1301 48.7
Lj3C272T4 Lonicera japonica HOM05D005651 ORTHO05D006877 0.0e+00 1144.8 1320 48.6
Nn8g41263 Nelumbo nucifera HOM05D005651 ORTHO05D006877 0.0e+00 1142.5 1303 48.8
AL7G42200 Arabidopsis lyrata HOM05D005651 ORTHO05D006877 0.0e+00 1142.1 1308 46.7
Phvul.001G265000 Phaseolus vulgaris HOM05D005651 ORTHO05D006877 0.0e+00 1134.4 1295 48.3
arahy.Tifrunner.gnm1.ann1.9V91M6 Arachis hypogaea HOM05D005651 ORTHO05D006877 0.0e+00 1125.9 1291 48.8
Carub.0007s2821 Capsella rubella HOM05D005651 ORTHO05D006877 0.0e+00 1125.2 1300 46.9
Rhsim02G0090700 Rhododendron simsii HOM05D005651 ORTHO05D006877 0.0e+00 1124.0 1157 52.5
MBI11_g07399_MAGBIO Magnolia biondii HOM05D005651 ORTHO05D006877 0.0e+00 1121.7 1335 47.9
Cc03_g09140 Coffea canephora HOM05D005651 ORTHO05D006877 0.0e+00 1118.6 1290 47.2
Sp5g13520 Schrenkiella parvula HOM05D005651 ORTHO05D006877 0.0e+00 1110.5 1292 46.4
Sc25g0005740 Simmondsia chinensis HOM05D005651 ORTHO05D006877 0.0e+00 1105.1 1291 46.5
Peaxi162Scf00017g02338 Petunia axillaris HOM05D005651 ORTHO05D006877 0.0e+00 1103.2 1292 47.7
Duzib212G0903 Durio zibethinus HOM05D005651 ORTHO05D006877 0.0e+00 1094.7 1128 52.9
arahy.Tifrunner.gnm1.ann1.4U9R65 Arachis hypogaea HOM05D005651 ORTHO05D006877 0.0e+00 1094.0 1320 47.2
HanXRQChr14g0436391 Helianthus annuus HOM05D005651 ORTHO05D006877 0.0e+00 1090.9 1274 47.1
Aa31LG9G3210 Aethionema arabicum HOM05D005651 ORTHO05D006877 0.0e+00 1088.9 1296 45.9
C03p35350 Brassica napus HOM05D005651 ORTHO05D006877 0.0e+00 1087.4 1295 45.3
BcaC01g04643 Brassica carinata HOM05D005651 ORTHO05D006877 0.0e+00 1086.2 1306 45.2
A03p29160 Brassica napus HOM05D005651 ORTHO05D006877 0.0e+00 1086.2 1307 45.0
BolC3t15845H Brassica oleracea HOM05D005651 ORTHO05D006877 0.0e+00 1086.2 1306 45.2
Eucgr.H02630 Eucalyptus grandis HOM05D005651 ORTHO05D006877 0.0e+00 1085.5 1307 47.8
BcaB01g02715 Brassica carinata HOM05D005651 ORTHO05D006877 0.0e+00 1081.2 1313 45.6
Sopen03g033090 Solanum pennellii HOM05D005651 ORTHO05D006877 0.0e+00 1078.2 1291 46.1
Migut.G00953 Erythranthe guttata HOM05D005651 ORTHO05D006877 9.0e-312 1074.7 1289 46.9
PSO063G2404 Papaver somniferum HOM05D005651 ORTHO05D006877 1.8e-311 1073.2 1299 47.0
arahy.Tifrunner.gnm1.ann1.EYX4BI Arachis hypogaea HOM05D005651 ORTHO05D006877 3.6e-311 1072.0 1315 46.7
Lsat_1_v5_gn_2_47921 Lactuca sativa HOM05D005651 ORTHO05D006877 1.1e-307 1060.4 1314 45.7
TWI56G0421 Tripterygium wilfordii HOM05D005651 ORTHO05D006877 1.3e-305 1053.5 1155 50.0
Thhalv10027320m.g Eutrema salsugineum HOM05D005651 ORTHO05D006877 4.7e-303 1045.0 1295 45.1
Solyc03g114040.3 Solanum lycopersicum HOM05D005651 ORTHO05D006877 3.8e-300 1035.4 1341 43.9
SalBow1G5228 Salvia bowleyana HOM05D005651 ORTHO05D006877 1.4e-299 1033.5 1291 44.8
SalBow1G5941 Salvia bowleyana HOM05D005651 ORTHO05D006877 7.1e-299 1031.2 1291 44.9
SGA_v2.0_scaffold12G06118 Striga asiatica HOM05D005651 ORTHO05D006877 2.1e-298 1029.6 1292 44.6
Manes.05G198800 Manihot esculenta HOM05D005651 ORTHO05D006877 4.0e-294 1015.4 1039 53.0
CiPaw.01G113500 Carya illinoinensis HOM05D005651 ORTHO05D006877 2.4e-291 1006.1 1060 51.5
Lalb_Chr24g0394531 Lupinus albus HOM05D005651 ORTHO05D006877 5.4e-291 1005.0 1126 50.3
Nitab4.5_0001422g0060 Nicotiana tabacum HOM05D005651 ORTHO05D006877 1.3e-289 1000.3 1308 43.7
ATR0582G376 Amborella trichopoda HOM05D005651 ORTHO05D006877 1.1e-286 990.7 1247 44.0
PSO017G3585 Papaver somniferum HOM05D005651 ORTHO05D006877 2.2e-284 983.0 1194 47.0
EL10Ac3g07437 Beta vulgaris HOM05D005651 ORTHO05D006877 8.4e-284 981.1 1279 43.9
Cfa008665 Carpinus fangiana HOM05D005651 ORTHO05D006877 4.8e-279 965.3 940 55.3
CAN.G781.41 Capsicum annuum HOM05D005651 ORTHO05D006877 3.2e-275 952.6 1269 43.5
DCAR_026668 Daucus carota HOM05D005651 ORTHO05D006877 6.0e-274 948.3 1290 43.4
Oeu050724.1 Olea europaea HOM05D005651 ORTHO05D006877 2.8e-271 939.5 1162 46.0
AUR62018536 Chenopodium quinoa HOM05D005651 ORTHO05D006877 4.0e-270 935.6 1207 43.6
AUR62020881 Chenopodium quinoa HOM05D005651 ORTHO05D006877 2.1e-266 923.3 1247 42.5
Nitab4.5_0009569g0040 Nicotiana tabacum HOM05D005651 ORTHO05D006877 2.3e-249 866.7 1009 47.1
Atru.chr3.1765 Acer truncatum HOM05D005651 ORTHO05D006877 2.5e-243 846.7 861 53.8
ECA238G0348 Erigeron canadensis HOM05D005651 ORTHO05D006877 6.1e-234 815.5 1198 40.6
Ah.04g149640 Amaranthus hybridus HOM05D005651 ORTHO05D006877 4.0e-233 812.8 1114 41.2
SHI01044 Sapria himalayana HOM05D005651 ORTHO05D006877 9.8e-224 781.6 1056 44.1
Dinv32168 Davidia involucrata HOM05D005651 ORTHO05D006877 6.6e-220 768.8 756 54.1
Os04g0347800 Oryza sativa ssp. japonica HOM05D005651 ORTHO05D006877 8.3e-215 751.9 1140 38.7
Phvul.004G062100 Phaseolus vulgaris HOM05D005651 ORTHO05D006877 1.7e-204 717.6 851 46.5
SEGI_00340 Sequoiadendron giganteum HOM05D005651 ORTHO05D006877 4.7e-194 682.9 1293 34.5
Zm00001eb389920 Zea mays HOM05D005651 ORTHO05D006877 1.4e-190 671.4 1010 37.1
unitig_748.g8008 Utricularia gibba HOM05D005651 ORTHO05D006877 9.5e-187 658.7 1033 38.4
Lj3C268T6 Lonicera japonica HOM05D005651 ORTHO05D006877 3.5e-181 640.2 768 46.5
CARHR220210 Cardamine hirsuta HOM05D005651 ORTHO05D006877 4.0e-177 626.7 663 49.9
Dinv32169 Davidia involucrata HOM05D005651 ORTHO05D006877 2.2e-151 541.2 466 60.9
Psat2g094320 Pisum sativum HOM05D005651 ORTHO05D006877 1.6e-146 525.0 582 49.3
vmacro15590 Vaccinium macrocarpon HOM05D005651 ORTHO05D006877 3.7e-146 523.9 719 43.7
CDE02G2388 Ceratophyllum demersum HOM05D005651 ORTHO05D006877 1.0e-143 515.8 651 45.8
Lj3A268T25 Lonicera japonica HOM05D005651 ORTHO05D006877 1.6e-141 508.4 492 55.7
CARHR220220 Cardamine hirsuta HOM05D005651 ORTHO05D006877 1.4e-132 478.8 658 41.0
Phvul.006G051700 Phaseolus vulgaris HOM05D005651 ORTHO05D006877 1.4e-113 415.6 470 49.6
Atru.chr3.1766 Acer truncatum HOM05D005651 ORTHO05D006877 9.1e-113 412.9 398 57.3
Mapoly0195s0003 Marchantia polymorpha HOM05D005651 ORTHO05D006877 3.3e-102 377.9 1304 25.7
HPP92_024561 Vanilla planifolia HOM05D005651 ORTHO05D006877 1.0e-100 372.9 469 44.1
Pp3c15_15330 Physcomitrium patens HOM05D005651 ORTHO05D006877 6.2e-93 347.1 1256 25.2
Prupe.1G176200 Prunus persica HOM05D005651 ORTHO05D006877 9.5e-78 296.6 606 35.6
HPP92_024556 Vanilla planifolia HOM05D005651 ORTHO05D006877 2.3e-71 275.4 384 39.1
PGSC0003DMG400024589 Solanum tuberosum HOM05D005651 ORTHO05D006877 3.0e-71 275.0 358 42.5
Psat2g094280 Pisum sativum HOM05D005651 ORTHO05D006877 7.3e-70 270.4 395 40.8
HPP92_024560 Vanilla planifolia HOM05D005651 ORTHO05D006877 4.7e-69 267.7 377 40.8
SHI01039 Sapria himalayana HOM05D005651 ORTHO05D006877 3.7e-45 188.3 181 53.0
Nitab4.5_0009569g0060 Nicotiana tabacum HOM05D005651 ORTHO05D006877 1.3e-39 169.9 275 39.3
Ah.04g149630 Amaranthus hybridus HOM05D005651 ORTHO05D006877 3.4e-35 155.2 134 56.7
vmacro15591 Vaccinium macrocarpon HOM05D005651 ORTHO05D006877 3.8e-34 151.8 324 34.6
Psat0s1368g0040 Pisum sativum HOM05D005651 ORTHO05D006877 2.7e-32 145.6 185 43.2
BraA03t12111Z Brassica rapa HOM05D005651 ORTHO05D006877 3.5e-32 145.2 147 49.7
Lalb_Chr24g0394541 Lupinus albus HOM05D005651 ORTHO05D006877 6.1e-32 144.4 153 51.6
BcaB01g02718 Brassica carinata HOM05D005651 ORTHO05D006877 4.2e-25 121.7 110 53.6
CSS0048714 Camellia sinensis var. sinensis HOM05D005651 ORTHO05D006877 2.1e-24 119.4 138 49.3
TWI56G0074 Tripterygium wilfordii HOM05D005651 ORTHO05D006877 2.7e-24 119.0 111 60.4
FAN22G0619 Fragaria x ananassa HOM05D005651 ORTHO05D006877 2.0e-19 102.8 129 47.3
unitig_748.g8007 Utricularia gibba HOM05D005651 ORTHO05D006877 6.5e-18 97.8 213 29.6
Lj5P691T0 Lonicera japonica HOM05D005651 ORTHO05D006877 1.3e-13 83.6 115 45.2
Eucgr.F02519 Eucalyptus grandis HOM05D005651 ORTHO05D006877 8.2e-13 80.9 62 64.5
TPR.G28787 Trifolium pratense HOM05D005651 ORTHO05D006877 5.9e-11 74.7 111 42.3
SHI01042 Sapria himalayana HOM05D005651 ORTHO05D006877 7.7e-11 74.3 59 62.7
TAR633G2085 Trochodendron aralioides HOM05D005651 ORTHO05D006877 1.3e-10 73.6 117 36.8


User provided reference genes

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