Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG08G003630 Citrullus lanatus HOM05D002892 ORTHO05D003224 2.2e-48 195.3 96 100.0
CsaV3_6G003080 Cucumis sativus L. HOM05D002892 ORTHO05D003224 1.3e-40 169.5 89 94.4
Sed0019564 Sechium edule HOM05D002892 ORTHO05D003224 4.9e-40 167.5 95 86.3
MELO3C026126.2 Cucumis melo HOM05D002892 ORTHO05D003224 6.3e-40 167.2 89 92.1
Duzib268G0514 Durio zibethinus HOM05D002892 ORTHO05D003224 5.0e-37 157.5 89 85.4
COL.COLO4_04284 Corchorus olitorius HOM05D002892 ORTHO05D003224 8.6e-37 156.8 93 81.7
Thecc.04G191900 Theobroma cacao HOM05D002892 ORTHO05D003224 1.5e-36 156.0 95 78.9
MD04G1021300 Malus domestica HOM05D002892 ORTHO05D003224 2.5e-36 155.2 93 75.3
Gohir.D10G136200 Gossypium hirsutum HOM05D002892 ORTHO05D003224 1.2e-35 152.9 90 80.0
Gorai.011G151000 Gossypium raimondii HOM05D002892 ORTHO05D003224 1.2e-35 152.9 90 80.0
Gohir.A10G130100 Gossypium hirsutum HOM05D002892 ORTHO05D003224 6.1e-35 150.6 90 78.9
RcHm_v2.0_Chr4g0412551 Rosa chinensis HOM05D002892 ORTHO05D003224 1.4e-34 149.4 87 79.3
QL06p027085 Quercus lobata HOM05D002892 ORTHO05D003224 6.8e-34 147.1 82 86.6
THA.LOC104808679 Tarenaya hassleriana HOM05D002892 ORTHO05D003224 3.4e-33 144.8 93 72.0
PGR142G0163 Punica granatum HOM05D002892 ORTHO05D003224 4.4e-33 144.4 93 73.1
FvH4_4g12880 Fragaria vesca HOM05D002892 ORTHO05D003224 5.8e-33 144.1 87 75.9
FAN07G0904 Fragaria x ananassa HOM05D002892 ORTHO05D003224 5.8e-33 144.1 87 75.9
Cfa008658 Carpinus fangiana HOM05D002892 ORTHO05D003224 1.7e-32 142.5 87 74.7
Eucgr.L00633 Eucalyptus grandis HOM05D002892 ORTHO05D003224 1.7e-32 142.5 87 75.9
Migut.G00949 Erythranthe guttata HOM05D002892 ORTHO05D003224 2.2e-32 142.1 95 71.6
Thecc.04G192000 Theobroma cacao HOM05D002892 ORTHO05D003224 2.2e-32 142.1 95 73.7
A01p31310 Brassica napus HOM05D002892 ORTHO05D003224 4.9e-32 141.0 86 76.7
C01p39920 Brassica napus HOM05D002892 ORTHO05D003224 4.9e-32 141.0 86 76.7
BolC1t03947H Brassica oleracea HOM05D002892 ORTHO05D003224 4.9e-32 141.0 86 76.7
BraA01t03257Z Brassica rapa HOM05D002892 ORTHO05D003224 4.9e-32 141.0 86 76.7
TAR362G0375 Trochodendron aralioides HOM05D002892 ORTHO05D003224 4.9e-32 141.0 87 78.2
Rhsim02G0068800 Rhododendron simsii HOM05D002892 ORTHO05D003224 6.4e-32 140.6 93 69.9
MSTRG.4258 Avicennia marina HOM05D002892 ORTHO05D003224 8.3e-32 140.2 95 69.5
Manes.05G199300 Manihot esculenta HOM05D002892 ORTHO05D003224 8.3e-32 140.2 84 78.6
Potri.002G236000 Populus trichocarpa HOM05D002892 ORTHO05D003224 8.3e-32 140.2 87 74.7
Ciclev10005278m.g Citrus clementina HOM05D002892 ORTHO05D003224 1.1e-31 139.8 86 75.6
Hma1.2p1_1457F.1_g284670 Hydrangea macrophylla HOM05D002892 ORTHO05D003224 1.9e-31 139.0 93 72.0
Aa31LG8G10260 Aethionema arabicum HOM05D002892 ORTHO05D003224 2.4e-31 138.7 87 73.6
BcaB04g20426 Brassica carinata HOM05D002892 ORTHO05D003224 2.4e-31 138.7 86 75.6
Sabra02G0179800 Salix brachista HOM05D002892 ORTHO05D003224 2.4e-31 138.7 86 74.4
CANSAT78G1570 Cannabis sativa HOM05D002892 ORTHO05D003224 3.2e-31 138.3 93 68.8
Oeu034313.2 Olea europaea HOM05D002892 ORTHO05D003224 3.2e-31 138.3 86 75.6
SalBow2G2169 Salvia bowleyana HOM05D002892 ORTHO05D003224 3.2e-31 138.3 89 70.8
CSS0041646 Camellia sinensis var. sinensis HOM05D002892 ORTHO05D003224 5.4e-31 137.5 83 78.3
Cpa.g.sc157.20 Carica papaya HOM05D002892 ORTHO05D003224 7.0e-31 137.1 86 76.7
Nn1g08127 Nelumbo nucifera HOM05D002892 ORTHO05D003224 7.0e-31 137.1 85 77.6
Actinidia24786 Actinidia chinensis HOM05D002892 ORTHO05D003224 9.2e-31 136.7 91 70.3
Sp3g21420 Schrenkiella parvula HOM05D002892 ORTHO05D003224 1.2e-30 136.3 87 72.4
AL3G38580 Arabidopsis lyrata HOM05D002892 ORTHO05D003224 1.6e-30 136.0 87 72.4
Carub.0003s2401 Capsella rubella HOM05D002892 ORTHO05D003224 1.6e-30 136.0 87 71.3
CiPaw.01G113900 Carya illinoinensis HOM05D002892 ORTHO05D003224 2.0e-30 135.6 82 75.6
SalBow2G0061 Salvia bowleyana HOM05D002892 ORTHO05D003224 2.0e-30 135.6 89 69.7
arahy.Tifrunner.gnm1.ann1.CJD5DY Arachis hypogaea HOM05D002892 ORTHO05D003224 2.7e-30 135.2 93 67.7
AT3G23710 Arabidopsis thaliana HOM05D002892 ORTHO05D003224 3.5e-30 134.8 87 71.3
CARHR099700 Cardamine hirsuta HOM05D002892 ORTHO05D003224 3.5e-30 134.8 83 75.9
Lalb_Chr12g0205811 Lupinus albus HOM05D002892 ORTHO05D003224 3.5e-30 134.8 87 73.6
Nitab4.5_0000037g0190 Nicotiana tabacum HOM05D002892 ORTHO05D003224 1.0e-29 133.3 87 72.4
Thhalv10002616m.g Eutrema salsugineum HOM05D002892 ORTHO05D003224 1.3e-29 132.9 87 72.4
Lj4g0007099 Lotus japonicus HOM05D002892 ORTHO05D003224 2.3e-29 132.1 87 70.1
PSO017G1890 Papaver somniferum HOM05D002892 ORTHO05D003224 2.3e-29 132.1 83 75.9
CAN.G1155.2 Capsicum annuum HOM05D002892 ORTHO05D003224 3.0e-29 131.7 87 70.1
PSO063G1354 Papaver somniferum HOM05D002892 ORTHO05D003224 3.0e-29 131.7 83 75.9
arahy.Tifrunner.gnm1.ann1.IRX0L3 Arachis hypogaea HOM05D002892 ORTHO05D003224 3.9e-29 131.3 85 71.8
vmacro15589 Vaccinium macrocarpon HOM05D002892 ORTHO05D003224 3.9e-29 131.3 85 70.6
Aqoxy2G04043 Aquilegia oxysepala HOM05D002892 ORTHO05D003224 6.6e-29 130.6 87 71.3
Atru.chr3.1780 Acer truncatum HOM05D002892 ORTHO05D003224 8.6e-29 130.2 90 67.8
Solyc09g092530.4 Solanum lycopersicum HOM05D002892 ORTHO05D003224 1.9e-28 129.0 87 70.1
Sopen09g035430 Solanum pennellii HOM05D002892 ORTHO05D003224 1.9e-28 129.0 87 70.1
PGSC0003DMG400021879 Solanum tuberosum HOM05D002892 ORTHO05D003224 1.9e-28 129.0 87 70.1
ECA238G4530 Erigeron canadensis HOM05D007777 ORTHO05D007255 2.5e-28 128.6 87 67.8
GSVIVG01031575001 Vitis vinifera HOM05D002892 ORTHO05D003224 3.3e-28 128.3 87 69.0
Glyma.05G150300 Glycine max HOM05D002892 ORTHO05D003224 7.3e-28 127.1 87 65.5
Hund19023 Selenicereus undatus HOM05D002892 ORTHO05D003224 1.2e-27 126.3 86 67.4
DCAR_021439 Daucus carota HOM05D002892 ORTHO05D003224 2.1e-27 125.6 83 69.9
TWI53G0024 Tripterygium wilfordii HOM05D002892 ORTHO05D003224 2.1e-27 125.6 89 68.5
Phvul.003G291300 Phaseolus vulgaris HOM05D002892 ORTHO05D003224 8.0e-27 123.6 87 62.1
MBI07_g02622_MAGBIO Magnolia biondii HOM05D002892 ORTHO05D003224 1.1e-26 123.2 81 72.8
VMungo0251G1691 Vigna mungo HOM05D002892 ORTHO05D003224 1.1e-26 123.2 85 64.7
TPR.G11829 Trifolium pratense HOM05D002892 ORTHO05D003224 1.4e-26 122.9 87 64.4
Cc03_g09180 Coffea canephora HOM05D002892 ORTHO05D003224 3.1e-26 121.7 87 67.8
Os07g0290800 Oryza sativa ssp. japonica HOM05D002892 ORTHO05D003224 4.0e-26 121.3 94 61.7
Duzib151G0859 Durio zibethinus HOM05D002892 ORTHO05D003224 8.9e-26 120.2 90 65.6
EL10Ac3g07434 Beta vulgaris HOM05D002892 ORTHO05D003224 2.6e-25 118.6 99 59.6
Ca_18006_v3 Cicer arietinum L. HOM05D002892 ORTHO05D003224 3.4e-25 118.2 87 62.1
HPP92_013635 Vanilla planifolia HOM05D002892 ORTHO05D003224 3.4e-25 118.2 91 63.7
Glyma.08G107200 Glycine max HOM05D002892 ORTHO05D003224 4.4e-25 117.9 87 60.9
Zm00001eb305250 Zea mays HOM05D002892 ORTHO05D003224 4.4e-25 117.9 88 63.6
ATR0561G132 Amborella trichopoda HOM05D002892 ORTHO05D003224 7.5e-25 117.1 87 65.5
HPP92_013630 Vanilla planifolia HOM05D002892 ORTHO05D003224 7.5e-25 117.1 91 62.6
Psat7g076520 Pisum sativum HOM05D002892 ORTHO05D003224 5.4e-23 110.9 86 61.6
Medtr8g081030 Medicago truncatula HOM05D002892 ORTHO05D003224 1.6e-22 109.4 87 58.6
SGA_v2.0_scaffold17G08007 Striga asiatica HOM05D002892 ORTHO05D003224 1.6e-22 109.4 93 59.1
FAN12G3534 Fragaria x ananassa HOM05D002892 ORTHO05D003224 2.7e-22 108.6 89 59.6
Prupe.1G170300 Prunus persica HOM05D002892 ORTHO05D003224 3.5e-22 108.2 67 77.6
AUR62020883 Chenopodium quinoa HOM05D002892 ORTHO05D003224 1.2e-19 99.8 65 70.8
Ah.13g077800 Amaranthus hybridus HOM05D002892 ORTHO05D003224 1.6e-19 99.4 92 55.4
AUR62018534 Chenopodium quinoa HOM05D002892 ORTHO05D003224 1.4e-18 96.3 64 67.2
BcaB07g33885 Brassica carinata HOM05D002892 ORTHO05D003224 1.8e-18 95.9 73 61.6
HanXRQChr14g0436511 Helianthus annuus HOM05D002892 ORTHO05D003224 2.2e-16 89.0 61 68.9
Peaxi162Scf00286g01040 Petunia axillaris HOM05D002892 ORTHO05D003224 1.4e-15 86.3 87 50.6
Lsat_1_v5_gn_2_47761 Lactuca sativa HOM05D002892 ORTHO05D003224 2.4e-15 85.5 68 58.8
Pp3c6_7780 Physcomitrium patens HOM05D002892 ORTHO05D003224 5.4e-15 84.3 81 54.3
Dinv32165 Davidia involucrata HOM05D002892 ORTHO05D003224 3.5e-14 81.6 59 69.5
CDE09G1133 Ceratophyllum demersum HOM05D002892 ORTHO05D003224 1.7e-13 79.3 58 65.5
Mapoly0066s0055 Marchantia polymorpha HOM05D002892 ORTHO05D003224 5.1e-13 77.8 81 48.1
SMO367G0099 Selaginella moellendorffii HOM05D002892 ORTHO05D003224 8.6e-13 77.0 81 48.1
CBR_g39650 Chara braunii HOM05D002892 ORTHO05D003224 1.9e-12 75.9 85 45.9
Actinidia35830 Actinidia chinensis HOM05D002892 ORTHO05D003224 1.2e-09 66.6 43 72.1
CAN.G1684.1 Capsicum annuum HOM05D002892 ORTHO05D003224 1.2e-09 66.6 63 55.6
SEGI_05003 Sequoiadendron giganteum HOM05D002892 ORTHO05D003224 1.3e-08 63.2 66 50.0
Pp3c16_18870 Physcomitrium patens HOM05D002892 ORTHO05D003224 1.7e-08 62.8 83 48.2
Actinidia38055 Actinidia chinensis HOM05D002892 ORTHO05D003224 1.4e-07 59.7 78 39.7
Medtr3g101630 Medicago truncatula HOM05D002892 ORTHO05D003224 1.9e-07 59.3 81 40.7
BraA01t00473Z Brassica rapa HOM05D002892 ORTHO05D003224 2.4e-07 58.9 81 40.7
TPR.G28112 Trifolium pratense HOM05D002892 ORTHO05D003224 3.2e-07 58.5 81 39.5
arahy.Tifrunner.gnm1.ann1.N5DCQN Arachis hypogaea HOM05D002892 ORTHO05D003224 5.4e-07 57.8 78 37.2
arahy.Tifrunner.gnm1.ann1.WGY2X0 Arachis hypogaea HOM05D002892 ORTHO05D003224 5.4e-07 57.8 78 37.2
Ciclev10002150m.g Citrus clementina HOM05D002892 ORTHO05D003224 7.1e-07 57.4 78 37.2
MBI02_g02986_MAGBIO Magnolia biondii HOM05D002892 ORTHO05D003224 7.1e-07 57.4 90 36.7
BcaC09g52146 Brassica carinata HOM05D002892 ORTHO05D003224 9.3e-07 57.0 81 40.7
Oeu059303.1 Olea europaea HOM05D002892 ORTHO05D003224 9.3e-07 57.0 71 43.7
Oeu059304.1 Olea europaea HOM05D002892 ORTHO05D003224 9.3e-07 57.0 71 43.7
Sed0005111 Sechium edule HOM05D002892 ORTHO05D003224 9.3e-07 57.0 78 37.2
TAR628G0976 Trochodendron aralioides HOM05D002892 ORTHO05D003224 9.3e-07 57.0 78 39.7
MELO3C016748.2 Cucumis melo HOM05D002892 ORTHO05D003224 1.2e-06 56.6 78 35.9
DCAR_012771 Daucus carota HOM05D002892 ORTHO05D003224 1.2e-06 56.6 81 38.3
HanXRQChr09g0267661 Helianthus annuus HOM05D002892 ORTHO05D003224 1.2e-06 56.6 78 41.0
Manes.18G036600 Manihot esculenta HOM05D002892 ORTHO05D003224 1.2e-06 56.6 78 37.2
Nn5g30336 Nelumbo nucifera HOM05D002892 ORTHO05D003224 1.2e-06 56.6 78 38.5
VMungo1309G0289 Vigna mungo HOM05D002892 ORTHO05D003224 1.2e-06 56.6 81 38.3
Ah.15g091750 Amaranthus hybridus HOM05D002892 ORTHO05D003224 1.6e-06 56.2 79 41.8
Gohir.D01G107500 Gossypium hirsutum HOM05D002892 ORTHO05D003224 1.6e-06 56.2 81 39.5
Phvul.009G064600 Phaseolus vulgaris HOM05D002892 ORTHO05D003224 1.6e-06 56.2 81 38.3
Sc15g0006160 Simmondsia chinensis HOM05D002892 ORTHO05D003224 1.6e-06 56.2 78 39.7
BcaNung02166 Brassica carinata HOM05D002892 ORTHO05D003224 2.1e-06 55.8 81 39.5
A03p61920 Brassica napus HOM05D000526 ORTHO05D007025 2.1e-06 55.8 81 40.7
C07p59580 Brassica napus HOM05D000526 ORTHO05D000956 2.1e-06 55.8 81 39.5
Cfa018545 Carpinus fangiana HOM05D002892 ORTHO05D003224 2.1e-06 55.8 78 38.5
Haze_17530 Corylus avellana HOM05D002892 ORTHO05D003224 2.1e-06 55.8 78 38.5
Lj1g0017795 Lotus japonicus HOM05D002892 ORTHO05D003224 2.1e-06 55.8 78 38.5
Sp7g31050 Schrenkiella parvula HOM05D002892 ORTHO05D003224 2.1e-06 55.8 81 39.5
Aa31sc807G10 Aethionema arabicum HOM05D002892 ORTHO05D003224 2.7e-06 55.5 80 38.8
BcaC09g52141 Brassica carinata HOM05D002892 ORTHO05D003224 2.7e-06 55.5 81 39.5
BraA03t15231Z Brassica rapa HOM05D000526 ORTHO05D000956 2.7e-06 55.5 81 39.5
Duzib093G1832 Durio zibethinus HOM05D002892 ORTHO05D003224 2.7e-06 55.5 80 37.5
Thhalv10025972m.g Eutrema salsugineum HOM05D002892 ORTHO05D003224 2.7e-06 55.5 81 39.5
FvH4_2g34490 Fragaria vesca HOM05D002892 ORTHO05D003224 2.7e-06 55.5 81 37.0
FAN15G3236 Fragaria x ananassa HOM05D002892 ORTHO05D003224 2.7e-06 55.5 81 37.0
FAN20G0094 Fragaria x ananassa HOM05D002892 ORTHO05D003224 2.7e-06 55.5 78 35.9
FAN27G1213 Fragaria x ananassa HOM05D002892 ORTHO05D003224 2.7e-06 55.5 78 37.2
RcHm_v2.0_Chr6g0307851 Rosa chinensis HOM05D002892 ORTHO05D003224 2.7e-06 55.5 81 37.0
THA.LOC104804433 Tarenaya hassleriana HOM05D002892 ORTHO05D003224 2.7e-06 55.5 81 39.5
MSTRG.25096 Avicennia marina HOM05D002892 ORTHO05D003224 3.5e-06 55.1 78 37.2
A01p04910 Brassica napus HOM05D002892 ORTHO05D003224 3.5e-06 55.1 81 39.5
CSS0039112 Camellia sinensis var. sinensis HOM05D002892 ORTHO05D003224 3.5e-06 55.1 81 39.5
CARHR241390 Cardamine hirsuta HOM05D002892 ORTHO05D003224 3.5e-06 55.1 81 39.5
Migut.C00585 Erythranthe guttata HOM05D002892 ORTHO05D003224 3.5e-06 55.1 78 37.2
MD15G1083800 Malus domestica HOM05D002892 ORTHO05D003224 3.5e-06 55.1 81 38.3
Potri.014G030000 Populus trichocarpa HOM05D002892 ORTHO05D003224 3.5e-06 55.1 78 38.5
Aqoxy6G01338 Aquilegia oxysepala HOM05D002892 ORTHO05D003224 4.6e-06 54.7 78 38.5
CiPaw.15G057700 Carya illinoinensis HOM05D002892 ORTHO05D003224 4.6e-06 54.7 78 38.5
Dinv39321 Davidia involucrata HOM05D002892 ORTHO05D003224 4.6e-06 54.7 81 39.5
Lsat_1_v5_gn_4_125040 Lactuca sativa HOM05D002892 ORTHO05D003224 4.6e-06 54.7 78 41.0
MD08G1102400 Malus domestica HOM05D002892 ORTHO05D003224 4.6e-06 54.7 81 37.0
Potri.002G126800 Populus trichocarpa HOM05D002892 ORTHO05D003224 4.6e-06 54.7 78 37.2
QL02p004922 Quercus lobata HOM05D002892 ORTHO05D003224 4.6e-06 54.7 78 37.2
QL02p005020 Quercus lobata HOM05D002892 ORTHO05D003224 4.6e-06 54.7 78 37.2
TWI36G1436 Tripterygium wilfordii HOM05D002892 ORTHO05D003224 4.6e-06 54.7 81 38.3
vmacro04452 Vaccinium macrocarpon HOM05D002892 ORTHO05D003224 4.6e-06 54.7 78 35.9
Carub.0007s0714 Capsella rubella HOM05D002892 ORTHO05D003224 6.0e-06 54.3 81 38.3
CAN.G371.14 Capsicum annuum HOM05D002892 ORTHO05D003224 6.0e-06 54.3 78 34.6
Ca_15952_v3 Cicer arietinum L. HOM05D002892 ORTHO05D003224 6.0e-06 54.3 78 35.9
ClCG05G019830 Citrullus lanatus HOM05D002892 ORTHO05D003224 6.0e-06 54.3 78 35.9
PGR031G1294 Punica granatum HOM05D002892 ORTHO05D003224 6.0e-06 54.3 81 38.3
AL7G18220 Arabidopsis lyrata HOM05D002892 ORTHO05D003224 7.8e-06 53.9 81 38.3
AT4G33350 Arabidopsis thaliana HOM05D002892 ORTHO05D003224 7.8e-06 53.9 81 38.3
CSS0027640 Camellia sinensis var. sinensis HOM05D002892 ORTHO05D003224 7.8e-06 53.9 81 38.3
Duzib041G0039 Durio zibethinus HOM05D002892 ORTHO05D003224 7.8e-06 53.9 77 35.1
Migut.N03125 Erythranthe guttata HOM05D002892 ORTHO05D003224 7.8e-06 53.9 79 41.8
Migut.N03126 Erythranthe guttata HOM05D002892 ORTHO05D003224 7.8e-06 53.9 79 40.5
Glyma.06G039500 Glycine max HOM05D002892 ORTHO05D003224 7.8e-06 53.9 81 37.0
Lalb_Chr08g0245311 Lupinus albus HOM05D002892 ORTHO05D003224 7.8e-06 53.9 78 37.2
Oeu059298.1 Olea europaea HOM05D002892 ORTHO05D288095 7.8e-06 53.9 69 44.9
PGSC0003DMG400008017 Solanum tuberosum HOM05D002892 ORTHO05D003224 7.8e-06 53.9 78 34.6


User provided reference genes

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