Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG08G003050 Citrullus lanatus HOM05D003947 ORTHO05D004614 1.0e-131 473.4 235 100.0
Sed0008617 Sechium edule HOM05D003947 ORTHO05D004614 3.3e-90 335.5 199 86.4
Sed0016828 Sechium edule HOM05D003947 ORTHO05D004614 4.0e-80 302.0 181 84.5
TWI32G0514 Tripterygium wilfordii HOM05D003947 ORTHO05D004614 8.4e-70 267.7 198 71.7
Cfa018286 Carpinus fangiana HOM05D003947 ORTHO05D004614 9.3e-69 264.2 198 70.2
Thecc.08G158700 Theobroma cacao HOM05D003947 ORTHO05D004614 4.6e-68 261.9 198 68.2
Prupe.8G040000 Prunus persica HOM05D003947 ORTHO05D004614 7.9e-68 261.2 198 68.2
MD10G1033900 Malus domestica HOM05D003947 ORTHO05D004614 1.3e-67 260.4 198 67.7
TWI60G0849 Tripterygium wilfordii HOM05D003947 ORTHO05D004614 1.3e-67 260.4 199 69.3
Manes.18G094500 Manihot esculenta HOM05D003947 ORTHO05D004614 8.7e-67 257.7 198 68.2
MD05G1032900 Malus domestica HOM05D003947 ORTHO05D004614 7.4e-66 254.6 198 67.2
RcHm_v2.0_Chr6g0274321 Rosa chinensis HOM05D003947 ORTHO05D004614 9.7e-66 254.2 199 69.3
FvH4_2g13060 Fragaria vesca HOM05D003947 ORTHO05D004614 3.7e-65 252.3 199 66.3
FAN24G1125 Fragaria x ananassa HOM05D003947 ORTHO05D004614 3.7e-65 252.3 199 66.3
Manes.02G182900 Manihot esculenta HOM05D003947 ORTHO05D004614 8.2e-65 251.1 198 66.2
Potri.005G196300 Populus trichocarpa HOM05D003947 ORTHO05D004614 1.4e-64 250.4 198 66.7
GSVIVG01034579001 Vitis vinifera HOM05D003947 ORTHO05D004614 2.4e-64 249.6 198 67.2
FAN15G1092 Fragaria x ananassa HOM05D003947 ORTHO05D004614 3.1e-64 249.2 204 64.2
Dinv41043 Davidia involucrata HOM05D003947 ORTHO05D004614 5.3e-64 248.4 200 65.5
CiPaw.15G012800 Carya illinoinensis HOM05D003947 ORTHO05D004614 9.0e-64 247.7 199 66.3
Hma1.2p1_0358F.1_g134715 Hydrangea macrophylla HOM05D003947 ORTHO05D004614 1.5e-63 246.9 203 65.5
FAN27G1126 Fragaria x ananassa HOM05D003947 ORTHO05D004614 2.0e-63 246.5 199 65.3
Atru.chr13.2012 Acer truncatum HOM05D003947 ORTHO05D004614 4.5e-63 245.4 204 66.2
Eucgr.F04191 Eucalyptus grandis HOM05D003947 ORTHO05D004614 4.5e-63 245.4 197 61.9
Sabra05G0149600 Salix brachista HOM05D003947 ORTHO05D004614 4.5e-63 245.4 198 65.2
Psat6g190840 Pisum sativum HOM05D003947 ORTHO05D004614 1.0e-62 244.2 199 64.8
Gohir.A02G062801 Gossypium hirsutum HOM05D003947 ORTHO05D004614 1.3e-62 243.8 200 65.5
Ca_10666_v3 Cicer arietinum L. HOM05D003947 ORTHO05D004614 2.2e-62 243.0 202 64.4
Haze_17801 Corylus avellana HOM05D003947 ORTHO05D004614 2.2e-62 243.0 181 70.2
Duzib093G0177 Durio zibethinus HOM05D003947 ORTHO05D004614 2.2e-62 243.0 198 65.2
VMungo0720G0983 Vigna mungo HOM05D003947 ORTHO05D004614 2.9e-62 242.7 202 63.4
arahy.Tifrunner.gnm1.ann1.8MR9WY Arachis hypogaea HOM05D003947 ORTHO05D004614 5.0e-62 241.9 198 65.2
Duzib116G0212 Durio zibethinus HOM05D003947 ORTHO05D004614 5.0e-62 241.9 198 65.7
Glyma.10G221900 Glycine max HOM05D003947 ORTHO05D004614 5.0e-62 241.9 202 64.4
Gorai.005G077400 Gossypium raimondii HOM05D003947 ORTHO05D004614 5.0e-62 241.9 200 65.0
Sabra02G0051800 Salix brachista HOM05D003947 ORTHO05D004614 5.0e-62 241.9 198 64.6
CiPaw.16G008700 Carya illinoinensis HOM05D003947 ORTHO05D004614 8.5e-62 241.1 197 67.0
Glyma.20G169600 Glycine max HOM05D003947 ORTHO05D004614 1.1e-61 240.7 204 63.7
Phvul.007G083100 Phaseolus vulgaris HOM05D003947 ORTHO05D004614 1.1e-61 240.7 202 63.4
CANSAT25G3237 Cannabis sativa HOM05D003947 ORTHO05D004614 1.4e-61 240.4 200 64.0
Gohir.D02G068500 Gossypium hirsutum HOM05D003947 ORTHO05D004614 1.4e-61 240.4 200 64.5
Sc02g0003850 Simmondsia chinensis HOM05D003947 ORTHO05D004614 2.5e-61 239.6 198 64.1
Potri.002G064900 Populus trichocarpa HOM05D003947 ORTHO05D004614 4.2e-61 238.8 198 65.2
Hma1.2p1_0678F.1_g202000 Hydrangea macrophylla HOM05D003947 ORTHO05D004614 9.4e-61 237.7 201 64.7
QL02p038162 Quercus lobata HOM05D003947 ORTHO05D004614 9.4e-61 237.7 181 68.0
Hund17479 Selenicereus undatus HOM05D003947 ORTHO05D004614 1.6e-60 236.9 209 60.3
Cpa.g.sc26.88 Carica papaya HOM05D003947 ORTHO05D004614 3.6e-60 235.7 185 68.1
Nitab4.5_0002812g0010 Nicotiana tabacum HOM05D003947 ORTHO05D004614 7.9e-60 234.6 201 61.7
Actinidia29546 Actinidia chinensis HOM05D003947 ORTHO05D004614 1.0e-59 234.2 201 61.7
PGSC0003DMG401025066 Solanum tuberosum HOM05D003947 ORTHO05D004614 1.0e-59 234.2 201 63.2
Lalb_Chr21g0305571 Lupinus albus HOM05D003947 ORTHO05D004614 1.4e-59 233.8 198 64.1
Peaxi162Scf00360g00029 Petunia axillaris HOM05D003947 ORTHO05D004614 1.4e-59 233.8 201 61.2
Sopen04g027950 Solanum pennellii HOM05D003947 ORTHO05D004614 1.8e-59 233.4 201 63.2
CSS0022992 Camellia sinensis var. sinensis HOM05D003947 ORTHO05D004614 3.0e-59 232.6 201 62.7
Lj5g0019118 Lotus japonicus HOM05D003947 ORTHO05D004614 3.0e-59 232.6 203 62.6
Solyc04g071970.4 Solanum lycopersicum HOM05D003947 ORTHO05D004614 3.0e-59 232.6 201 63.2
Nitab4.5_0000099g0180 Nicotiana tabacum HOM05D003947 ORTHO05D004614 5.1e-59 231.9 201 61.7
Gohir.D05G247600 Gossypium hirsutum HOM05D003947 ORTHO05D004614 6.7e-59 231.5 199 65.8
Ciclev10002453m.g Citrus clementina HOM05D003947 ORTHO05D004614 8.8e-59 231.1 206 65.0
Gorai.009G258400 Gossypium raimondii HOM05D003947 ORTHO05D004614 1.1e-58 230.7 199 65.8
COL.COLO4_03360 Corchorus olitorius HOM05D003947 ORTHO05D004614 1.5e-58 230.3 181 68.0
Cc10_g15190 Coffea canephora HOM05D003947 ORTHO05D004614 2.5e-58 229.6 198 61.6
Gohir.A05G246100 Gossypium hirsutum HOM05D003947 ORTHO05D004614 2.5e-58 229.6 199 65.3
Actinidia17770 Actinidia chinensis HOM05D003947 ORTHO05D004614 5.7e-58 228.4 199 61.8
Medtr1g098260 Medicago truncatula HOM05D003947 ORTHO05D004614 7.4e-58 228.0 222 57.2
arahy.Tifrunner.gnm1.ann1.H1TMWI Arachis hypogaea HOM05D003947 ORTHO05D004614 9.7e-58 227.6 197 62.4
PGR044G0664 Punica granatum HOM05D003947 ORTHO05D004614 1.3e-57 227.3 202 61.4
AUR62026639 Chenopodium quinoa HOM05D003947 ORTHO05D004614 1.7e-57 226.9 201 60.7
AUR62034897 Chenopodium quinoa HOM05D003947 ORTHO05D004614 6.3e-57 224.9 183 63.4
arahy.Tifrunner.gnm1.ann1.2W58SS Arachis hypogaea HOM05D003947 ORTHO05D004614 1.8e-56 223.4 197 61.9
arahy.Tifrunner.gnm1.ann1.P1AQDG Arachis hypogaea HOM05D003947 ORTHO05D004614 1.8e-56 223.4 183 65.0
Duzib041G0104 Durio zibethinus HOM05D003947 ORTHO05D004614 1.5e-55 220.3 181 66.3
Lalb_Chr02g0141531 Lupinus albus HOM05D003947 ORTHO05D004614 5.0e-54 215.3 199 61.3
vmacro21121 Vaccinium macrocarpon HOM05D003947 ORTHO05D004614 1.9e-53 213.4 190 61.1
TAR625G1169 Trochodendron aralioides HOM05D003947 ORTHO05D004614 2.1e-52 209.9 181 61.9
TAR376G1220 Trochodendron aralioides HOM05D003947 ORTHO05D004614 7.9e-52 208.0 198 58.1
Ah.05g168170 Amaranthus hybridus HOM05D003947 ORTHO05D004614 1.8e-51 206.8 182 61.0
Glyma.16G163700 Glycine max HOM05D003947 ORTHO05D004614 3.0e-51 206.1 197 59.4
Aa31LG7G6750 Aethionema arabicum HOM05D003947 ORTHO05D004614 8.8e-51 204.5 198 57.1
MSTRG.25300 Avicennia marina HOM05D003947 ORTHO05D004614 3.3e-50 202.6 215 53.5
TAR381G1088 Trochodendron aralioides HOM05D003947 ORTHO05D004614 5.7e-50 201.8 193 58.5
Rhsim11G0087300 Rhododendron simsii HOM05D003947 ORTHO05D004614 7.4e-50 201.4 201 56.7
AL1G36340 Arabidopsis lyrata HOM05D003947 ORTHO05D004614 2.2e-49 199.9 206 55.8
Lj7P382T65 Lonicera japonica HOM05D003947 ORTHO05D004614 2.8e-49 199.5 185 60.5
Carub.0001s2230 Capsella rubella HOM05D003947 ORTHO05D004614 3.7e-49 199.1 209 56.0
AT1G22790 Arabidopsis thaliana HOM05D003947 ORTHO05D004614 8.2e-49 198.0 208 56.2
TAR628G1588 Trochodendron aralioides HOM05D003947 ORTHO05D004614 7.0e-48 194.9 180 58.9
Glyma.02G079300 Glycine max HOM05D003947 ORTHO05D004614 2.6e-47 193.0 197 56.9
MSTRG.24219 Avicennia marina HOM05D003947 ORTHO05D004614 4.5e-47 192.2 205 55.6
Actinidia04751 Actinidia chinensis HOM05D003947 ORTHO05D004614 1.0e-46 191.0 197 54.8
MSTRG.1106 Avicennia marina HOM05D003947 ORTHO05D004614 1.0e-46 191.0 209 53.1
SalBow6G2315 Salvia bowleyana HOM05D003947 ORTHO05D004614 1.0e-46 191.0 193 57.0
CARHR023150 Cardamine hirsuta HOM05D003947 ORTHO05D004614 1.7e-46 190.3 218 53.7
MBI04_g08942_MAGBIO Magnolia biondii HOM05D003947 ORTHO05D004614 1.7e-46 190.3 181 59.1
THA.LOC104810422 Tarenaya hassleriana HOM05D003947 ORTHO05D004614 1.7e-46 190.3 198 55.1
Oeu051281.1 Olea europaea HOM05D003947 ORTHO05D004614 2.2e-46 189.9 186 59.1
Oeu002064.1 Olea europaea HOM05D003947 ORTHO05D004614 3.8e-46 189.1 187 58.3
Aqoxy6G00408 Aquilegia oxysepala HOM05D003947 ORTHO05D004614 5.0e-46 188.7 187 55.1
PSO541G4258 Papaver somniferum HOM05D003947 ORTHO05D004614 8.5e-46 188.0 199 53.3
PSO675G7401 Papaver somniferum HOM05D003947 ORTHO05D004614 1.9e-45 186.8 199 54.8
THA.LOC104806764 Tarenaya hassleriana HOM05D003947 ORTHO05D004614 2.5e-45 186.4 202 53.0
HPP92_002802 Vanilla planifolia HOM05D003947 ORTHO05D004614 4.2e-45 185.7 195 54.4
SalBow7G0665 Salvia bowleyana HOM05D003947 ORTHO05D004614 9.4e-45 184.5 186 56.5
DCAR_001161 Daucus carota HOM05D003947 ORTHO05D004614 1.2e-44 184.1 192 54.2
TPR.G17018 Trifolium pratense HOM05D003947 ORTHO05D004614 2.1e-44 183.3 167 59.9
Lj4P703T37 Lonicera japonica HOM05D003947 ORTHO05D004614 8.0e-44 181.4 203 57.6
Hund26679 Selenicereus undatus HOM05D003947 ORTHO05D004614 8.0e-44 181.4 180 56.1
Oeu017623.1 Olea europaea HOM05D003947 ORTHO05D004614 1.0e-43 181.0 186 54.3
THA.LOC104813088 Tarenaya hassleriana HOM05D003947 ORTHO05D004614 5.2e-43 178.7 202 51.5
Dinv25896 Davidia involucrata HOM05D003947 ORTHO05D004614 1.1e-42 177.6 203 49.8
Manes.16G051400 Manihot esculenta HOM05D003947 ORTHO05D004614 3.3e-42 176.0 150 61.3
Migut.C00963 Erythranthe guttata HOM05D003947 ORTHO05D004614 1.3e-41 174.1 216 50.9
Oeu022056.3 Olea europaea HOM05D003947 ORTHO05D004614 1.3e-41 174.1 188 51.6
CSS0014660 Camellia sinensis var. sinensis HOM05D003947 ORTHO05D004614 2.8e-41 172.9 197 49.7
Lalb_Chr19g0130101 Lupinus albus HOM05D003947 ORTHO05D004614 2.8e-41 172.9 197 54.8
VMungo0464G0903 Vigna mungo HOM05D003947 ORTHO05D004614 2.8e-41 172.9 183 56.3
vmacro01489 Vaccinium macrocarpon HOM05D003947 ORTHO05D004614 8.2e-41 171.4 183 54.1
Rhsim06G0091600 Rhododendron simsii HOM05D003947 ORTHO05D004614 1.1e-40 171.0 202 54.5
Aa31LG4G8980 Aethionema arabicum HOM05D003947 ORTHO05D004614 3.1e-40 169.5 197 48.7
ECA246G0665 Erigeron canadensis HOM05D003947 ORTHO05D006423 4.1e-40 169.1 207 52.2
Thhalv10008850m.g Eutrema salsugineum HOM05D003947 ORTHO05D004614 5.3e-40 168.7 202 49.5
Aa31LG6G8230 Aethionema arabicum HOM05D003947 ORTHO05D004614 1.2e-39 167.5 201 47.8
Migut.N03200 Erythranthe guttata HOM05D003947 ORTHO05D004614 1.6e-39 167.2 215 49.3
Sp1g29270 Schrenkiella parvula HOM05D003947 ORTHO05D004614 4.5e-39 165.6 202 49.0
Os01g0589700 Oryza sativa ssp. japonica HOM05D003947 ORTHO05D004614 3.8e-38 162.5 193 50.3
SGA_v2.0_scaffold108G30867 Striga asiatica HOM05D003947 ORTHO05D004614 6.5e-38 161.8 197 52.8
Carub.0001s3209 Capsella rubella HOM05D003947 ORTHO05D004614 1.1e-37 161.0 201 47.3
HanXRQChr10g0278611 Helianthus annuus HOM05D003947 ORTHO05D004614 4.2e-37 159.1 202 48.5
Lj2g0016258 Lotus japonicus HOM05D003947 ORTHO05D004614 7.2e-37 158.3 194 52.1
BcaC05g27781 Brassica carinata HOM05D003947 ORTHO05D004614 3.6e-36 156.0 199 47.2
AL1G48450 Arabidopsis lyrata HOM05D003947 ORTHO05D004614 4.7e-36 155.6 205 48.3
Lsat_1_v5_gn_1_5261 Lactuca sativa HOM05D003947 ORTHO05D004614 4.7e-36 155.6 221 45.7
CARHR033390 Cardamine hirsuta HOM05D003947 ORTHO05D004614 8.0e-36 154.8 203 48.3
BolC5t32518H Brassica oleracea HOM05D003947 ORTHO05D004614 1.0e-35 154.5 199 45.7
CsaV3_6G005040 Cucumis sativus L. HOM05D003947 ORTHO05D004614 1.0e-35 154.5 200 49.0
PGR042G2534 Punica granatum HOM05D003947 ORTHO05D004614 1.0e-35 154.5 198 49.0
MELO3C008326.2 Cucumis melo HOM05D003947 ORTHO05D004614 4.0e-35 152.5 201 49.8
SGA_v2.0_scaffold195G40776 Striga asiatica HOM05D003947 ORTHO05D004614 8.8e-35 151.4 187 50.3
A09p32460 Brassica napus HOM05D003947 ORTHO05D004614 1.2e-34 151.0 206 45.6
BcaB07g33023 Brassica carinata HOM05D030501 ORTHO05D004614 1.5e-34 150.6 206 46.6
Phvul.004G091200 Phaseolus vulgaris HOM05D003947 ORTHO05D004614 2.6e-34 149.8 178 49.4
BcaC08g43824 Brassica carinata HOM05D003947 ORTHO05D004614 3.4e-34 149.4 199 47.2
BolC6t36345H Brassica oleracea HOM05D003947 ORTHO05D004614 3.4e-34 149.4 199 47.2
C06p12080 Brassica napus HOM05D003947 ORTHO05D004614 4.4e-34 149.1 199 47.2
Nn1g06005 Nelumbo nucifera HOM05D003947 ORTHO05D004614 5.7e-34 148.7 202 48.5
AT1G34010 Arabidopsis thaliana HOM05D003947 ORTHO05D004614 2.2e-33 146.7 204 46.1
Zm00001eb160770 Zea mays HOM05D003947 ORTHO05D004614 2.2e-33 146.7 198 46.5
BraA09t39684Z Brassica rapa HOM05D003947 ORTHO05D004614 3.7e-33 146.0 221 49.3
ClCG08G007400 Citrullus lanatus HOM05D003947 ORTHO05D004614 6.3e-33 145.2 201 48.3
A05p24080 Brassica napus HOM05D003947 ORTHO05D004614 1.4e-32 144.1 199 45.2
HanXRQChr05g0162361 Helianthus annuus HOM05D003947 ORTHO05D004614 1.4e-32 144.1 207 45.4
C05p37750 Brassica napus HOM05D003947 ORTHO05D004614 2.2e-30 136.7 180 47.2
BcaNung06442 Brassica carinata HOM05D003947 ORTHO05D004614 1.1e-29 134.4 225 43.6
BraA09t38788Z Brassica rapa HOM05D003947 ORTHO05D004614 1.5e-29 134.0 185 47.0
Zm00001eb357510 Zea mays HOM05D003947 ORTHO05D004614 2.5e-29 133.3 189 43.9
Actinidia26828 Actinidia chinensis HOM05D003947 ORTHO05D004614 3.2e-29 132.9 165 47.3
unitig_32.g11256 Utricularia gibba HOM05D003947 ORTHO05D004614 4.2e-29 132.5 210 41.4
BraA05t21288Z Brassica rapa HOM05D003947 ORTHO05D006423 4.0e-27 125.9 180 44.4
PSO700G0284 Papaver somniferum HOM05D003947 ORTHO05D004614 3.1e-24 116.3 198 40.4
SalBow7G0026 Salvia bowleyana HOM05D003947 ORTHO05D004614 9.2e-24 114.8 95 63.2
SHI09085 Sapria himalayana HOM05D003947 ORTHO05D004614 9.2e-24 114.8 182 42.3
A09p41960 Brassica napus HOM05D003947 ORTHO05D004614 1.3e-22 110.9 211 42.7
PSO170G0396 Papaver somniferum HOM05D003947 ORTHO05D004614 1.3e-22 110.9 200 41.0
BcaNung06106 Brassica carinata HOM05D003947 ORTHO05D004614 3.8e-22 109.4 168 48.8
ATR1120G111 Amborella trichopoda HOM05D003947 ORTHO05D004614 1.9e-21 107.1 203 42.9
Sed0006124 Sechium edule HOM05D003947 ORTHO05D004614 1.9e-21 107.1 157 43.3
BolC5t30884H Brassica oleracea HOM05D003947 ORTHO05D004614 4.3e-21 105.9 170 47.6
Lsat_1_v5_gn_6_101640 Lactuca sativa HOM05D003947 ORTHO05D004614 5.6e-21 105.5 208 38.5
C05p21890 Brassica napus HOM05D003947 ORTHO05D004614 9.5e-21 104.8 166 47.6
Lsat_1_v5_gn_9_42121 Lactuca sativa HOM05D003947 ORTHO05D004614 9.5e-21 104.8 162 45.7
Sed0022469 Sechium edule HOM05D003947 ORTHO05D004614 1.5e-18 97.4 162 43.8
Os05g0591450 Oryza sativa ssp. japonica HOM05D003947 ORTHO05D004614 4.9e-17 92.4 105 50.5
HPP92_002804 Vanilla planifolia HOM05D003947 ORTHO05D004614 3.3e-13 79.7 133 42.9
Aqoxy5G02026 Aquilegia oxysepala HOM05D003947 ORTHO05D004614 8.3e-09 65.1 150 34.0
Cfa009557 Carpinus fangiana HOM05D007392 ORTHO05D009181 7.0e-08 62.0 140 35.0
PSO339G3225 Papaver somniferum HOM05D007392 ORTHO05D009181 3.5e-07 59.7 136 35.3
MBI01_g34161_MAGBIO Magnolia biondii HOM05D003947 ORTHO05D004614 1.0e-06 58.2 125 36.8
PSO384G3152 Papaver somniferum HOM05D007392 ORTHO05D009181 1.0e-06 58.2 135 35.6
CANSAT11G0973 Cannabis sativa HOM05D007392 ORTHO05D009181 1.7e-06 57.4 136 33.1
RcHm_v2.0_Chr5g0083851 Rosa chinensis HOM05D007392 ORTHO05D009181 3.9e-06 56.2 131 32.1
CiPaw.13G177600 Carya illinoinensis HOM05D007392 ORTHO05D009181 5.0e-06 55.8 136 33.8
Sopen01g001550 Solanum pennellii HOM05D007392 ORTHO05D009181 8.6e-06 55.1 125 32.8


User provided reference genes

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