Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG08G002640 Citrullus lanatus HOM05D003898 ORTHO05D004642 4.5e-264 914.1 470 100.0
ClCG08G010840 Citrullus lanatus HOM05D003898 ORTHO05D004642 2.6e-139 499.6 471 64.1
MELO3C011378.2 Cucumis melo HOM05D003898 ORTHO05D004642 4.5e-123 445.7 470 57.7
CsaV3_6G035700 Cucumis sativus L. HOM05D003898 ORTHO05D004642 1.5e-121 440.7 471 58.2
Sed0026073 Sechium edule HOM05D003898 ORTHO05D004642 1.0e-111 407.9 470 53.8
QL12p035494 Quercus lobata HOM05D003898 ORTHO05D004642 1.7e-90 337.4 458 47.6
FAN13G1941 Fragaria x ananassa HOM05D003898 ORTHO05D004642 3.3e-89 333.2 466 45.7
Manes.02G157700 Manihot esculenta HOM05D003898 ORTHO05D004642 5.6e-89 332.4 447 46.8
RcHm_v2.0_Chr7g0240421 Rosa chinensis HOM05D003898 ORTHO05D004642 3.6e-88 329.7 457 46.2
FvH4_5g38420 Fragaria vesca HOM05D003898 ORTHO05D004642 1.4e-87 327.8 451 45.9
RcHm_v2.0_Chr1g0340891 Rosa chinensis HOM05D003898 ORTHO05D004642 1.2e-86 324.7 458 45.0
CiPaw.06G023700 Carya illinoinensis HOM05D003898 ORTHO05D004642 1.5e-86 324.3 456 46.5
Haze_00543 Corylus avellana HOM05D003898 ORTHO05D004642 1.5e-86 324.3 458 46.1
Dinv13069 Davidia involucrata HOM05D003898 ORTHO05D004642 1.5e-86 324.3 461 45.6
Prupe.1G507900 Prunus persica HOM05D003898 ORTHO05D004642 1.3e-85 321.2 457 44.6
Potri.005G170600 Populus trichocarpa HOM05D003898 ORTHO05D004642 4.9e-85 319.3 461 45.1
Potri.002G090500 Populus trichocarpa HOM05D003898 ORTHO05D004642 3.2e-84 316.6 461 45.1
TAR625G0437 Trochodendron aralioides HOM05D003898 ORTHO05D004642 3.2e-84 316.6 460 43.5
FAN08G2468 Fragaria x ananassa HOM05D003898 ORTHO05D004642 1.2e-83 314.7 455 44.8
Cpa.g.sc49.114 Carica papaya HOM05D003898 ORTHO05D004642 6.6e-82 308.9 453 43.5
COL.COLO4_16517 Corchorus olitorius HOM05D003898 ORTHO05D004642 1.9e-81 307.4 448 44.2
CiPaw.05G230800 Carya illinoinensis HOM05D003898 ORTHO05D004642 3.3e-81 306.6 461 44.7
GSVIVG01008958001 Vitis vinifera HOM05D003898 ORTHO05D004642 5.6e-81 305.8 458 42.6
FvH4_7g08221 Fragaria vesca HOM05D003898 ORTHO05D004642 7.3e-81 305.4 446 44.2
MD08G1174000 Malus domestica HOM05D003898 ORTHO05D004642 2.1e-80 303.9 458 44.5
Thecc.08G115200 Theobroma cacao HOM05D003898 ORTHO05D004642 4.7e-80 302.8 446 44.2
FAN01G1002 Fragaria x ananassa HOM05D000001 ORTHO05D000003 8.1e-80 302.0 457 43.3
TWI12G0005 Tripterygium wilfordii HOM05D003898 ORTHO05D004642 6.8e-79 298.9 447 43.4
Ciclev10005436m.g Citrus clementina HOM05D003898 ORTHO05D004642 8.9e-79 298.5 457 43.1
Duzib093G1469 Durio zibethinus HOM05D003898 ORTHO05D004642 8.9e-79 298.5 449 43.4
Aqoxy2G00480 Aquilegia oxysepala HOM05D003898 ORTHO05D004642 2.0e-78 297.4 457 41.4
Gorai.002G220000 Gossypium raimondii HOM05D003898 ORTHO05D004642 3.4e-78 296.6 446 43.7
Sabra02G0071500 Salix brachista HOM05D003898 ORTHO05D004642 3.4e-78 296.6 475 42.1
Cfa015947 Carpinus fangiana HOM05D003898 ORTHO05D004642 9.9e-78 295.0 403 46.2
PGR044G1262 Punica granatum HOM05D003898 ORTHO05D004642 2.2e-77 293.9 457 42.0
Sc16g0001430 Simmondsia chinensis HOM05D003898 ORTHO05D004642 2.9e-77 293.5 458 41.0
Gohir.D01G182400 Gossypium hirsutum HOM05D003898 ORTHO05D004642 4.9e-77 292.7 446 43.0
Nitab4.5_0006745g0040 Nicotiana tabacum HOM05D003898 ORTHO05D004642 1.1e-76 291.6 491 40.7
Ca_02530_v3 Cicer arietinum L. HOM05D003898 ORTHO05D004642 1.9e-76 290.8 457 41.4
Lj4C109T16 Lonicera japonica HOM05D003898 ORTHO05D004642 1.9e-76 290.8 469 42.2
CAN.G617.2 Capsicum annuum HOM05D003898 ORTHO05D004642 4.2e-76 289.7 461 41.2
PGSC0003DMG401016958 Solanum tuberosum HOM05D003898 ORTHO05D004642 7.1e-76 288.9 454 43.0
Gohir.A01G187300 Gossypium hirsutum HOM05D003898 ORTHO05D004642 1.2e-75 288.1 442 42.5
CSS0037064 Camellia sinensis var. sinensis HOM05D003898 ORTHO05D004642 2.1e-75 287.3 462 41.8
Lj1g0002951 Lotus japonicus HOM05D003898 ORTHO05D004642 2.1e-75 287.3 460 39.8
vmacro04776 Vaccinium macrocarpon HOM05D003898 ORTHO05D004642 2.1e-75 287.3 464 41.8
Sopen12g029520 Solanum pennellii HOM05D003898 ORTHO05D004642 2.7e-75 287.0 454 42.5
CANSAT25G0948 Cannabis sativa HOM05D003898 ORTHO05D004642 4.6e-75 286.2 450 41.8
Nitab4.5_0000425g0260 Nicotiana tabacum HOM05D003898 ORTHO05D004642 4.6e-75 286.2 457 41.8
Solyc12g056840.2 Solanum lycopersicum HOM05D003898 ORTHO05D004642 4.6e-75 286.2 454 42.3
Actinidia33168 Actinidia chinensis HOM05D003898 ORTHO05D004642 6.0e-75 285.8 464 42.2
MSTRG.24959 Avicennia marina HOM05D003898 ORTHO05D004642 7.8e-75 285.4 458 43.0
CSS0048138 Camellia sinensis var. sinensis HOM05D003898 ORTHO05D004642 5.1e-74 282.7 458 41.5
Glyma.04G254600 Glycine max HOM05D003898 ORTHO05D004642 6.6e-74 282.3 458 40.8
Psat5g107440 Pisum sativum HOM05D003898 ORTHO05D004642 6.6e-74 282.3 457 39.6
Solyc04g072480.3 Solanum lycopersicum HOM05D003898 ORTHO05D004642 6.6e-74 282.3 461 41.6
EL10Ac6g15432 Beta vulgaris HOM05D003898 ORTHO05D004642 8.7e-74 282.0 449 41.2
Rhsim07G0198900 Rhododendron simsii HOM05D003898 ORTHO05D004642 8.7e-74 282.0 466 42.1
TPR.G32957 Trifolium pratense HOM05D003898 ORTHO05D004642 8.7e-74 282.0 459 41.4
PSO210G6710 Papaver somniferum HOM05D003898 ORTHO05D004642 1.1e-73 281.6 457 41.4
arahy.Tifrunner.gnm1.ann1.K1QIEY Arachis hypogaea HOM05D003898 ORTHO05D004642 3.3e-73 280.0 473 41.0
Medtr4g112080 Medicago truncatula HOM05D003898 ORTHO05D004642 3.3e-73 280.0 449 40.5
PSO447G0107 Papaver somniferum HOM05D003898 ORTHO05D004642 4.3e-73 279.6 457 41.6
ECA246G0783 Erigeron canadensis HOM05D003898 ORTHO05D004642 7.3e-73 278.9 453 40.6
SGA_v2.0_scaffold11G05890 Striga asiatica HOM05D003898 ORTHO05D004642 7.3e-73 278.9 459 41.2
Peaxi162Scf00160g01643 Petunia axillaris HOM05D003898 ORTHO05D004642 2.1e-72 277.3 462 40.5
HanXRQChr05g0162311 Helianthus annuus HOM05D003898 ORTHO05D004642 6.2e-72 275.8 453 41.7
CAN.G47.19 Capsicum annuum HOM05D003898 ORTHO05D004642 2.4e-71 273.9 475 40.2
HanXRQChr01g0001161 Helianthus annuus HOM05D003898 ORTHO05D004642 3.1e-71 273.5 453 41.3
Glyma.06G107500 Glycine max HOM05D003898 ORTHO05D004642 4.0e-71 273.1 455 39.6
Sopen04g028670 Solanum pennellii HOM05D003898 ORTHO05D004642 1.5e-70 271.2 461 40.3
THA.LOC104813137 Tarenaya hassleriana HOM05D003898 ORTHO05D004642 1.5e-70 271.2 456 39.3
TPR.G26798 Trifolium pratense HOM05D003898 ORTHO05D004642 2.0e-70 270.8 460 39.8
Phvul.009G026700 Phaseolus vulgaris HOM05D003898 ORTHO05D004642 3.4e-70 270.0 456 37.9
BraA10t45381Z Brassica rapa HOM05D003898 ORTHO05D004642 4.4e-70 269.6 447 38.9
CDE10G0849 Ceratophyllum demersum HOM05D003898 ORTHO05D004642 4.4e-70 269.6 461 41.2
DCAR_028260 Daucus carota HOM05D003898 ORTHO05D004642 4.4e-70 269.6 458 40.8
Sp6g40350 Schrenkiella parvula HOM05D003898 ORTHO05D004642 1.3e-69 268.1 444 39.0
Lalb_Chr08g0241771 Lupinus albus HOM05D003898 ORTHO05D004642 1.7e-69 267.7 454 39.2
A10p33510 Brassica napus HOM05D003898 ORTHO05D004642 2.9e-69 266.9 446 39.0
Thhalv10014147m.g Eutrema salsugineum HOM05D003898 ORTHO05D004642 2.9e-69 266.9 447 38.7
BraA02t04709Z Brassica rapa HOM05D003898 ORTHO05D004642 4.9e-69 266.2 441 38.3
CARHR012640 Cardamine hirsuta HOM05D003898 ORTHO05D004642 4.9e-69 266.2 444 39.2
AUR62027853 Chenopodium quinoa HOM05D003898 ORTHO05D004642 4.9e-69 266.2 460 39.8
CANSAT01G0632 Cannabis sativa HOM05D003898 ORTHO05D004642 2.4e-68 263.8 454 42.1
VMungo1309G1855 Vigna mungo HOM05D003898 ORTHO05D004642 2.4e-68 263.8 464 38.4
Carub.0001s1201 Capsella rubella HOM05D003898 ORTHO05D004642 5.4e-68 262.7 445 38.9
AUR62019012 Chenopodium quinoa HOM05D003898 ORTHO05D004642 7.1e-68 262.3 470 38.1
Migut.C00215 Erythranthe guttata HOM05D003898 ORTHO05D004642 7.1e-68 262.3 441 40.8
Nitab4.5_0001307g0170 Nicotiana tabacum HOM05D003898 ORTHO05D004642 1.2e-67 261.5 457 40.7
BcaNung04450 Brassica carinata HOM05D003898 ORTHO05D004642 1.6e-67 261.2 444 39.0
Medtr3g073550 Medicago truncatula HOM05D003898 ORTHO05D004642 1.6e-67 261.2 460 37.8
Lalb_Chr11g0065591 Lupinus albus HOM05D003898 ORTHO05D004642 2.1e-67 260.8 460 39.3
TAR381G1034 Trochodendron aralioides HOM05D003898 ORTHO05D004642 4.6e-67 259.6 401 43.6
Lsat_1_v5_gn_9_70200 Lactuca sativa HOM05D003898 ORTHO05D004642 6.0e-67 259.2 444 40.1
SalBow7G2097 Salvia bowleyana HOM05D003898 ORTHO05D004642 2.3e-66 257.3 461 39.7
C09p74420 Brassica napus HOM05D003898 ORTHO05D004642 5.1e-66 256.1 444 38.5
AT1G12350 Arabidopsis thaliana HOM05D003898 ORTHO05D004642 1.1e-65 255.0 447 38.0
BolC9t60175H Brassica oleracea HOM05D003898 ORTHO05D004642 1.1e-65 255.0 444 38.3
C02p00370 Brassica napus HOM05D003898 ORTHO05D004642 2.5e-65 253.8 441 37.9
Oeu038191.1 Olea europaea HOM05D003898 ORTHO05D004642 5.6e-65 252.7 432 40.3
Lsat_1_v5_gn_6_68860 Lactuca sativa HOM05D003898 ORTHO05D004642 4.8e-64 249.6 401 41.6
Aa31LG9G14440 Aethionema arabicum HOM05D003898 ORTHO05D004642 1.4e-63 248.1 428 38.8
BcaNung06026 Brassica carinata HOM05D003898 ORTHO05D004642 1.8e-63 247.7 441 37.4
FvH4_5g38402 Fragaria vesca HOM05D003898 ORTHO05D004642 3.1e-63 246.9 345 44.9
FAN04G1035 Fragaria x ananassa HOM05D003898 ORTHO05D004642 5.3e-63 246.1 263 53.6
AL1G23670 Arabidopsis lyrata HOM05D003898 ORTHO05D004642 1.2e-62 245.0 448 37.3
RcHm_v2.0_Chr1g0340911 Rosa chinensis HOM05D003898 ORTHO05D004642 3.4e-62 243.4 396 41.4
arahy.Tifrunner.gnm1.ann1.PF76WK Arachis hypogaea HOM05D003898 ORTHO05D004642 9.9e-62 241.9 402 39.8
FAN06G3434 Fragaria x ananassa HOM05D000001 ORTHO05D000003 1.7e-61 241.1 456 37.9
Solyc10g011840.3 Solanum lycopersicum HOM05D003898 ORTHO05D004642 9.3e-60 235.3 459 38.1
arahy.Tifrunner.gnm1.ann1.HG05DD Arachis hypogaea HOM05D003898 ORTHO05D004642 1.6e-59 234.6 401 38.7
Cc10_g06070 Coffea canephora HOM05D003898 ORTHO05D004642 3.5e-59 233.4 397 40.3
Os02g0575200 Oryza sativa ssp. japonica HOM05D003898 ORTHO05D004642 6.0e-59 232.6 448 37.5
Zm00001eb182920 Zea mays HOM05D003898 ORTHO05D004642 5.1e-58 229.6 448 35.5
Nn1g05207 Nelumbo nucifera HOM05D003898 ORTHO05D004642 6.7e-58 229.2 351 41.3
arahy.Tifrunner.gnm1.ann1.Z23D3B Arachis hypogaea HOM05D003898 ORTHO05D004642 5.6e-57 226.1 410 38.0
HPP92_006004 Vanilla planifolia HOM05D003898 ORTHO05D004642 1.3e-56 224.9 453 37.1
Os08g0176100 Oryza sativa ssp. japonica HOM05D003898 ORTHO05D004642 2.8e-56 223.8 441 37.6
MD15G1360400 Malus domestica HOM05D003898 ORTHO05D004642 7.6e-54 215.7 254 49.6
PGSC0003DMG400027542 Solanum tuberosum HOM05D003898 ORTHO05D004642 1.3e-53 214.9 272 48.5
FAN18G1940 Fragaria x ananassa HOM05D003898 ORTHO05D004642 2.9e-53 213.8 196 59.7
Pp3c11_3000 Physcomitrium patens HOM05D003898 ORTHO05D004642 3.8e-53 213.4 449 34.7
SEGI_30417 Sequoiadendron giganteum HOM05D003898 ORTHO05D004642 6.5e-53 212.6 450 33.6
CSS0031031 Camellia sinensis var. sinensis HOM05D003898 ORTHO05D004642 1.4e-52 211.5 461 35.1
Atru.chr13.1300 Acer truncatum HOM05D003898 ORTHO05D004642 3.5e-51 206.8 238 50.0
Mapoly0004s0284 Marchantia polymorpha HOM05D003898 ORTHO05D004642 3.9e-50 203.4 442 34.8
Zm00001eb414730 Zea mays HOM05D003898 ORTHO05D004642 5.1e-50 203.0 452 35.6
ATR0564G227 Amborella trichopoda HOM05D003898 ORTHO05D004642 8.7e-50 202.2 254 46.9
SalBow1G7967 Salvia bowleyana HOM05D003898 ORTHO05D004642 8.7e-50 202.2 256 48.4
AT5G02080 Arabidopsis thaliana HOM05D003898 ORTHO05D004642 4.3e-49 199.9 258 44.2
Eucgr.F04382 Eucalyptus grandis HOM05D003898 ORTHO05D004642 1.1e-47 195.3 177 60.5
Duzib116G0208 Durio zibethinus HOM05D003898 ORTHO05D004642 5.8e-46 189.5 449 34.7
BolC2t06037H Brassica oleracea HOM05D003898 ORTHO05D004642 5.0e-45 186.4 234 45.3
SMO137G0130 Selaginella moellendorffii HOM05D003898 ORTHO05D004642 4.6e-43 179.9 446 32.3
Psat4g046560 Pisum sativum HOM05D003898 ORTHO05D011365 6.1e-43 179.5 237 45.6
Lj4C710T9 Lonicera japonica HOM05D003898 ORTHO05D004642 3.9e-42 176.8 171 56.7
Ca_25770_v3 Cicer arietinum L. HOM05D003898 ORTHO05D004642 8.7e-42 175.6 180 52.8
AL6G11300 Arabidopsis lyrata HOM05D003898 ORTHO05D004642 1.5e-41 174.9 310 37.4
Nitab4.5_0000553g0060 Nicotiana tabacum HOM05D003898 ORTHO05D004642 3.7e-40 170.2 389 34.2
unitig_32.g11143 Utricularia gibba HOM05D003898 ORTHO05D004642 6.9e-39 166.0 161 56.5
PRCOL_00003493 Prasinoderma coloniale HOM05D003898 ORTHO05D004642 2.0e-38 164.5 453 30.2
Sopen10g005660 Solanum pennellii HOM05D003898 ORTHO05D004642 2.6e-38 164.1 166 56.0
Cre01.g048050 Chlamydomonas reinhardtii HOM05D003898 ORTHO05D004642 9.4e-36 155.6 364 31.3
SEGI_10597 Sequoiadendron giganteum HOM05D003898 ORTHO05D004642 1.4e-34 151.8 177 47.5
Dinv44720 Davidia involucrata HOM05D003898 ORTHO05D004642 4.3e-33 146.7 243 41.6
DCAR_027594 Daucus carota HOM05D003898 ORTHO05D004642 1.7e-32 144.8 249 40.2
SMO137G0020 Selaginella moellendorffii HOM05D003898 ORTHO05D004642 1.8e-31 141.4 401 30.7
SMO137G0337 Selaginella moellendorffii HOM05D003898 ORTHO05D004642 3.8e-29 133.7 200 40.0
Duzib041G0680 Durio zibethinus HOM05D003898 ORTHO05D004642 1.9e-28 131.3 134 56.0
CDE10G0276 Ceratophyllum demersum HOM05D003898 ORTHO05D004642 1.1e-25 122.1 259 36.7
AagrBONN_evm.TU.Sc2ySwM_344.1574 Anthoceros agrestis HOM05D003898 ORTHO05D004642 4.8e-24 116.7 300 32.0
MCO09G707 Micromonas commoda HOM05D003898 ORTHO05D004642 5.0e-21 106.7 223 33.2
Cfa024377 Carpinus fangiana HOM05D003898 ORTHO05D004642 2.5e-20 104.4 446 29.1
CBR_g9001 Chara braunii HOM05D003898 ORTHO05D004642 2.5e-20 104.4 154 42.9
Atru.chr4.493 Acer truncatum HOM05D003898 ORTHO05D004642 1.5e-17 95.1 83 57.8
Atru.chr13.1301 Acer truncatum HOM05D003898 ORTHO05D004642 2.0e-17 94.7 83 57.8
QL10p044069 Quercus lobata HOM05D003898 ORTHO05D004642 5.7e-17 93.2 80 60.0
Atru.chr1.2069 Acer truncatum HOM05D003898 ORTHO05D004642 4.8e-16 90.1 79 58.2
QL02p062685 Quercus lobata HOM05D003898 ORTHO05D004642 6.3e-16 89.7 80 61.2
arahy.Tifrunner.gnm1.ann1.N7W281 Arachis hypogaea HOM05D003898 ORTHO05D004642 1.8e-15 88.2 217 32.3
arahy.Tifrunner.gnm1.ann1.Z5SK82 Arachis hypogaea HOM05D003898 ORTHO05D004642 7.0e-15 86.3 207 34.3
Ah.05g170600 Amaranthus hybridus HOM05D003898 ORTHO05D004642 8.5e-13 79.3 76 56.6
CBR_g9000 Chara braunii HOM05D003898 ORTHO05D004642 1.5e-12 78.6 87 47.1
QL08p011560 Quercus lobata HOM05D003898 ORTHO05D004642 2.5e-12 77.8 64 62.5
QL10p009819 Quercus lobata HOM05D003898 ORTHO05D004642 3.2e-12 77.4 64 62.5
arahy.Tifrunner.gnm1.ann1.9J7JQ6 Arachis hypogaea HOM05D003898 ORTHO05D004642 1.2e-09 68.9 37 78.4
arahy.Tifrunner.gnm1.ann1.KW4E90 Arachis hypogaea HOM05D003898 ORTHO05D004642 1.5e-09 68.6 37 75.7
Peaxi162Scf00756g00110 Petunia axillaris HOM05D003898 ORTHO05D004642 9.8e-09 65.9 38 73.7
Aqoxy5G01116 Aquilegia oxysepala HOM05D003898 ORTHO05D004642 1.3e-08 65.5 40 77.5
unitig_32.g11144 Utricularia gibba HOM05D003898 ORTHO05D004642 5.4e-07 60.1 28 96.4
arahy.Tifrunner.gnm1.ann1.8FT8UW Arachis hypogaea HOM05D003898 ORTHO05D000721 7.7e-06 56.2 51 51.0
arahy.Tifrunner.gnm1.ann1.JWT6XR Arachis hypogaea HOM05D003898 ORTHO05D004642 7.7e-06 56.2 51 51.0


User provided reference genes

Program Settings