Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG08G001930 Citrullus lanatus HOM05D005262 ORTHO05D006590 2.2e-61 238.8 123 100.0
ClCG00G005120 Citrullus lanatus HOM05D005262 ORTHO05D006590 2.4e-44 182.2 115 83.5
ClCG05G024080 Citrullus lanatus HOM05D005262 ORTHO05D006590 2.4e-44 182.2 115 83.5
Sed0024226 Sechium edule HOM05D005262 ORTHO05D006590 3.7e-40 168.3 113 78.8
CiPaw.05G130500 Carya illinoinensis HOM05D005262 ORTHO05D006590 8.4e-37 157.1 114 70.2
QL03p069106 Quercus lobata HOM05D005262 ORTHO05D006590 1.1e-36 156.8 111 73.9
QL93p1999_0168 Quercus lobata HOM05D005262 ORTHO05D006590 1.1e-36 156.8 111 73.9
MELO3C012117.2 Cucumis melo HOM05D005262 ORTHO05D006590 3.2e-36 155.2 125 68.8
Hma1.2p1_1954F.1_g308920 Hydrangea macrophylla HOM05D005262 ORTHO05D006590 3.2e-36 155.2 112 69.6
QL07p005102 Quercus lobata HOM05D005262 ORTHO05D006590 3.2e-36 155.2 111 73.0
CsaV3_5G032960 Cucumis sativus L. HOM05D005262 ORTHO05D006590 7.1e-36 154.1 112 74.1
CSS0022308 Camellia sinensis var. sinensis HOM05D005262 ORTHO05D006590 6.0e-35 151.0 111 70.3
Dinv34128 Davidia involucrata HOM05D005262 ORTHO05D006590 1.0e-34 150.2 115 71.3
Haze_11969 Corylus avellana HOM05D001063 ORTHO05D000986 6.7e-34 147.5 111 66.7
Cfa008943 Carpinus fangiana HOM05D005262 ORTHO05D006590 1.5e-33 146.4 111 67.6
FAN19G1549 Fragaria x ananassa HOM05D005262 ORTHO05D006590 1.5e-33 146.4 114 66.7
Oeu054855.1 Olea europaea HOM05D005262 ORTHO05D006590 2.5e-33 145.6 106 71.7
Thecc.10G075900 Theobroma cacao HOM05D005262 ORTHO05D006590 2.5e-33 145.6 110 70.0
TWI23G0893 Tripterygium wilfordii HOM05D005262 ORTHO05D006590 3.3e-33 145.2 111 65.8
FAN23G1362 Fragaria x ananassa HOM05D005262 ORTHO05D006590 9.6e-33 143.7 114 65.8
Nitab4.5_0005903g0020 Nicotiana tabacum HOM05D005262 ORTHO05D006590 9.6e-33 143.7 109 69.7
FAN26G2856 Fragaria x ananassa HOM05D005262 ORTHO05D006590 1.3e-32 143.3 114 64.9
GSVIVG01012217001 Vitis vinifera HOM05D005262 ORTHO05D006590 1.6e-32 142.9 110 68.2
Nitab4.5_0001147g0090 Nicotiana tabacum HOM05D005262 ORTHO05D006590 3.7e-32 141.7 109 67.9
Prupe.2G171300 Prunus persica HOM05D005262 ORTHO05D006590 3.7e-32 141.7 112 66.1
TWI59G0657 Tripterygium wilfordii HOM05D005262 ORTHO05D006590 3.7e-32 141.7 111 64.9
CANSAT80G0446 Cannabis sativa HOM05D005262 ORTHO05D006590 6.2e-32 141.0 103 67.0
FvH4_1g30250 Fragaria vesca HOM05D005262 ORTHO05D006590 6.2e-32 141.0 114 64.9
MD07G1136300 Malus domestica HOM05D005262 ORTHO05D006590 6.2e-32 141.0 116 65.5
GSVIVG01005152001 Vitis vinifera HOM05D005262 ORTHO05D006590 1.4e-31 139.8 110 66.4
Lj7A251G27 Lonicera japonica HOM05D005262 ORTHO05D006590 2.4e-31 139.0 112 61.6
Lj7C254T2 Lonicera japonica HOM05D005262 ORTHO05D006590 2.4e-31 139.0 112 61.6
Lj8C474T0 Lonicera japonica HOM05D005262 ORTHO05D006590 2.4e-31 139.0 112 61.6
vmacro10351 Vaccinium macrocarpon HOM05D005262 ORTHO05D006590 2.4e-31 139.0 111 65.8
Cpa.g.sc57.36 Carica papaya HOM05D005262 ORTHO05D006590 3.1e-31 138.7 109 64.2
PGR102G3250 Punica granatum HOM05D005262 ORTHO05D006590 3.1e-31 138.7 113 63.7
Solyc07g017410.3 Solanum lycopersicum HOM05D005262 ORTHO05D006590 3.1e-31 138.7 109 67.9
Sopen07g006120 Solanum pennellii HOM05D005262 ORTHO05D006590 3.1e-31 138.7 109 67.9
PGSC0003DMG400009555 Solanum tuberosum HOM05D005262 ORTHO05D006590 3.1e-31 138.7 109 67.9
TAR365G0711 Trochodendron aralioides HOM05D005262 ORTHO05D006590 4.0e-31 138.3 109 66.1
Lj8C444T0 Lonicera japonica HOM05D005262 ORTHO05D006590 5.3e-31 137.9 112 60.7
Rhsim09G0138500 Rhododendron simsii HOM05D005262 ORTHO05D006590 6.9e-31 137.5 112 65.2
Sc04g0007950 Simmondsia chinensis HOM05D005262 ORTHO05D006590 9.0e-31 137.1 110 65.5
Atru.chr11.1609 Acer truncatum HOM05D005262 ORTHO05D006590 1.5e-30 136.3 111 65.8
Eucgr.I00218 Eucalyptus grandis HOM05D005262 ORTHO05D006590 2.0e-30 136.0 111 64.0
MD01G1063000 Malus domestica HOM05D005262 ORTHO05D006590 2.0e-30 136.0 109 65.1
PSO063G7616 Papaver somniferum HOM05D005262 ORTHO05D006590 2.6e-30 135.6 116 65.5
TAR496G0001 Trochodendron aralioides HOM05D005262 ORTHO05D006590 4.5e-30 134.8 109 65.1
TAR629G1254 Trochodendron aralioides HOM05D005262 ORTHO05D006590 4.5e-30 134.8 109 65.1
VMungo1215G2947 Vigna mungo HOM05D005262 ORTHO05D006590 4.5e-30 134.8 115 62.6
PSO832G0345 Papaver somniferum HOM05D005262 ORTHO05D006590 5.8e-30 134.4 116 64.7
CAN.G293.9 Capsicum annuum HOM05D005262 ORTHO05D006590 1.3e-29 133.3 109 64.2
Duzib114G0995 Durio zibethinus HOM05D005262 ORTHO05D006590 1.3e-29 133.3 110 62.7
HanXRQChr15g0476911 Helianthus annuus HOM05D005262 ORTHO05D006590 1.3e-29 133.3 110 63.6
Cc00_g16620 Coffea canephora HOM05D005262 ORTHO05D006590 1.7e-29 132.9 113 61.9
Lj6g0009238 Lotus japonicus HOM05D005262 ORTHO05D006590 2.2e-29 132.5 115 61.7
Hund04408 Selenicereus undatus HOM05D005262 ORTHO05D006590 2.2e-29 132.5 110 64.5
HPP92_008614 Vanilla planifolia HOM05D005262 ORTHO05D006590 2.2e-29 132.5 109 64.2
Manes.01G033800 Manihot esculenta HOM05D005262 ORTHO05D006590 2.9e-29 132.1 114 59.6
Peaxi162Scf00320g00123 Petunia axillaris HOM05D005262 ORTHO05D006590 4.9e-29 131.3 109 63.3
HanXRQChr17g0545311 Helianthus annuus HOM05D005262 ORTHO05D006590 6.5e-29 131.0 110 62.7
Lj2g0009005 Lotus japonicus HOM05D005262 ORTHO05D006590 1.4e-28 129.8 115 60.0
Glyma.01G052200 Glycine max HOM05D005262 ORTHO05D006590 2.5e-28 129.0 115 62.6
Phvul.003G046600 Phaseolus vulgaris HOM05D005262 ORTHO05D006590 5.5e-28 127.9 115 61.7
Glyma.02G110400 Glycine max HOM05D005262 ORTHO05D006590 9.3e-28 127.1 123 58.5
Gohir.A05G412300 Gossypium hirsutum HOM05D005262 ORTHO05D006590 1.2e-27 126.7 124 58.1
Aqoxy2G00811 Aquilegia oxysepala HOM05D005262 ORTHO05D006590 1.6e-27 126.3 111 59.5
DCAR_013139 Daucus carota HOM05D005262 ORTHO05D006590 1.6e-27 126.3 113 60.2
Gohir.D04G003700 Gossypium hirsutum HOM05D005262 ORTHO05D006590 2.1e-27 125.9 116 60.3
Gorai.012G004900 Gossypium raimondii HOM05D005262 ORTHO05D006590 2.1e-27 125.9 116 60.3
Gohir.A10G054500 Gossypium hirsutum HOM05D005262 ORTHO05D006590 3.5e-27 125.2 116 59.5
arahy.Tifrunner.gnm1.ann1.EK09V6 Arachis hypogaea HOM05D005262 ORTHO05D006590 4.6e-27 124.8 99 66.7
arahy.Tifrunner.gnm1.ann1.XG4VM3 Arachis hypogaea HOM05D005262 ORTHO05D006590 4.6e-27 124.8 99 66.7
Psat1g094200 Pisum sativum HOM05D005262 ORTHO05D006590 4.6e-27 124.8 115 61.7
ATR0810G029 Amborella trichopoda HOM05D005262 ORTHO05D006590 6.0e-27 124.4 112 61.6
TPR.G4647 Trifolium pratense HOM05D005262 ORTHO05D006590 6.0e-27 124.4 102 64.7
AUR62032822 Chenopodium quinoa HOM05D005262 ORTHO05D006590 7.9e-27 124.0 112 60.7
ECA246G3166 Erigeron canadensis HOM05D006399 ORTHO05D007988 7.9e-27 124.0 110 60.0
Migut.O00263 Erythranthe guttata HOM05D005262 ORTHO05D006590 7.9e-27 124.0 106 61.3
Lsat_1_v5_gn_3_51960 Lactuca sativa HOM05D005262 ORTHO05D006590 7.9e-27 124.0 108 61.1
MSTRG.11557 Avicennia marina HOM05D005262 ORTHO05D006590 1.0e-26 123.6 109 59.6
Ca_02973_v3 Cicer arietinum L. HOM05D005262 ORTHO05D006590 1.8e-26 122.9 101 64.4
Gorai.011G060300 Gossypium raimondii HOM05D005262 ORTHO05D006590 1.8e-26 122.9 116 58.6
Os12g0209100 Oryza sativa ssp. japonica HOM05D005262 ORTHO05D006590 1.8e-26 122.9 106 59.4
Sabra10G0125800 Salix brachista HOM05D005262 ORTHO05D006590 1.8e-26 122.9 115 59.1
Aqoxy1G02417 Aquilegia oxysepala HOM05D005262 ORTHO05D006590 2.3e-26 122.5 111 57.7
Lalb_Chr12g0202851 Lupinus albus HOM05D005262 ORTHO05D006590 2.3e-26 122.5 114 62.3
SGA_v2.0_scaffold25G10746 Striga asiatica HOM05D005262 ORTHO05D006590 2.3e-26 122.5 109 58.7
Potri.010G165500 Populus trichocarpa HOM05D005262 ORTHO05D006590 3.0e-26 122.1 112 60.7
EL10Ac8g18975 Beta vulgaris HOM05D005262 ORTHO05D006590 3.9e-26 121.7 107 61.7
Medtr8g006800 Medicago truncatula HOM05D005262 ORTHO05D006590 3.9e-26 121.7 105 61.0
Zm00001eb163570 Zea mays HOM05D005262 ORTHO05D006590 5.1e-26 121.3 109 59.6
Ciclev10032849m.g Citrus clementina HOM05D005262 ORTHO05D006590 6.7e-26 120.9 109 58.7
CDE02G1435 Ceratophyllum demersum HOM05D005262 ORTHO05D006590 8.7e-26 120.6 107 60.7
SGA_v2.0_scaffold90G27753 Striga asiatica HOM05D005262 ORTHO05D006590 1.1e-25 120.2 109 59.6
unitig_749.g14151 Utricularia gibba HOM05D005262 ORTHO05D006590 1.5e-25 119.8 106 57.5
SEGI_18406 Sequoiadendron giganteum HOM05D005262 ORTHO05D006590 4.3e-25 118.2 109 54.1
Medtr2g087760 Medicago truncatula HOM05D005262 ORTHO05D006590 2.8e-24 115.5 101 60.4
Haze_01349 Corylus avellana HOM05D005262 ORTHO05D006590 6.3e-24 114.4 83 67.5
COL.COLO4_28415 Corchorus olitorius HOM05D005262 ORTHO05D006590 9.0e-23 110.5 100 61.0
SalBow6G1526 Salvia bowleyana HOM05D005262 ORTHO05D006590 1.2e-22 110.2 106 53.8
Nn4g23238 Nelumbo nucifera HOM05D005262 ORTHO05D006590 5.9e-22 107.8 80 70.0
Eucgr.L00661 Eucalyptus grandis HOM05D005262 ORTHO05D006590 2.2e-21 105.9 83 68.7
Gohir.D10G056500 Gossypium hirsutum HOM05D005262 ORTHO05D006590 5.0e-21 104.8 80 70.0
AUR62005827 Chenopodium quinoa HOM05D006399 ORTHO05D007988 8.5e-21 104.0 118 51.7
RcHm_v2.0_Chr7g0220341 Rosa chinensis HOM05D005262 ORTHO05D006590 3.2e-20 102.1 85 61.2
THA.LOC104818198 Tarenaya hassleriana HOM05D005262 ORTHO05D006590 6.1e-19 97.8 110 44.5
CAN.G228.3 Capsicum annuum HOM05D005262 ORTHO05D006590 8.8e-18 94.0 85 63.5
RcHm_v2.0_Chr6g0271051 Rosa chinensis HOM05D005262 ORTHO05D006590 2.5e-17 92.4 88 59.1
AL1G38960 Arabidopsis lyrata HOM05D005262 ORTHO05D006590 7.4e-17 90.9 111 42.3
Carub.0001s2427 Capsella rubella HOM05D005262 ORTHO05D006590 7.4e-17 90.9 111 42.3
Aa31LG7G8380 Aethionema arabicum HOM05D005262 ORTHO05D006590 9.7e-17 90.5 110 41.8
Thhalv10008835m.g Eutrema salsugineum HOM05D005262 ORTHO05D006590 1.3e-16 90.1 111 42.3
Lj3C1034G10 Lonicera japonica HOM05D006399 ORTHO05D007988 1.7e-16 89.7 72 62.5
SEGI_29332 Sequoiadendron giganteum HOM05D005262 ORTHO05D006590 2.2e-16 89.4 87 52.9
CARHR025210 Cardamine hirsuta HOM05D005262 ORTHO05D006590 2.8e-16 89.0 111 40.5
Sp1g22060 Schrenkiella parvula HOM05D005262 ORTHO05D006590 3.7e-16 88.6 111 43.2
A07p13080 Brassica napus HOM05D005262 ORTHO05D006590 1.1e-15 87.0 111 43.2
AT1G26750 Arabidopsis thaliana HOM05D005262 ORTHO05D006590 3.1e-15 85.5 111 41.4
BraA07t29079Z Brassica rapa HOM05D005262 ORTHO05D006590 3.1e-15 85.5 111 43.2
SEGI_23137 Sequoiadendron giganteum HOM05D005262 ORTHO05D006590 3.1e-15 85.5 71 57.7
SEGI_36558 Sequoiadendron giganteum HOM05D005262 ORTHO05D006590 3.1e-15 85.5 71 57.7
SEGI_39727 Sequoiadendron giganteum HOM05D005262 ORTHO05D006590 9.1e-15 84.0 71 56.3
BcaB03g14087 Brassica carinata HOM05D005262 ORTHO05D006590 2.2e-13 79.3 111 40.5
BcaC06g35126 Brassica carinata HOM05D005262 ORTHO05D006590 2.2e-13 79.3 111 40.5
C07p19560 Brassica napus HOM05D005262 ORTHO05D006590 2.2e-13 79.3 111 40.5
BolC7t42473H Brassica oleracea HOM05D005262 ORTHO05D006590 2.2e-13 79.3 111 40.5
C05p24220 Brassica napus HOM05D005262 ORTHO05D006590 1.0e-10 70.5 111 36.9
A09p40160 Brassica napus HOM05D005262 ORTHO05D006590 3.0e-10 68.9 111 35.1
BraA09t39514Z Brassica rapa HOM05D005262 ORTHO05D006590 3.0e-10 68.9 111 35.1
BcaC05g26391 Brassica carinata HOM05D005262 ORTHO05D006590 6.7e-10 67.8 111 36.0
BolC5t31158H Brassica oleracea HOM05D005262 ORTHO05D006590 9.7e-09 63.9 67 52.2
FAN15G0396 Fragaria x ananassa HOM05D005262 ORTHO05D006590 2.2e-08 62.8 56 58.9
SHI20784 Sapria himalayana HOM05D005262 ORTHO05D006590 3.7e-08 62.0 94 42.6


User provided reference genes

Program Settings