Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG08G001530 Citrullus lanatus HOM05D004439 ORTHO05D005670 0.0e+00 1193.7 592 100.0
CsaV3_5G039570 Cucumis sativus L. HOM05D004439 ORTHO05D005670 1.4e-214 750.0 534 74.3
Sed0005226 Sechium edule HOM05D004439 ORTHO05D005670 1.7e-204 716.5 534 69.9
TAR629G1063 Trochodendron aralioides HOM05D004439 ORTHO05D005670 3.2e-174 615.9 539 60.9
Duzib205G1996 Durio zibethinus HOM05D004439 ORTHO05D005670 4.6e-173 612.1 538 60.2
GSVIVG01019518001 Vitis vinifera HOM05D004439 ORTHO05D005670 4.6e-173 612.1 523 61.4
Cfa023584 Carpinus fangiana HOM05D004439 ORTHO05D005670 1.3e-172 610.5 540 60.4
CiPaw.11G122200 Carya illinoinensis HOM05D004439 ORTHO05D005670 2.3e-172 609.8 543 59.9
Prupe.5G117700 Prunus persica HOM05D004439 ORTHO05D005670 2.3e-172 609.8 535 60.2
CANSAT21G0267 Cannabis sativa HOM05D004439 ORTHO05D005670 8.7e-172 607.8 538 59.1
vmacro13901 Vaccinium macrocarpon HOM05D004439 ORTHO05D005670 4.3e-171 605.5 540 59.1
Thecc.03G296500 Theobroma cacao HOM05D004439 ORTHO05D005670 5.6e-171 605.1 538 60.6
Duzib084G1213 Durio zibethinus HOM05D004439 ORTHO05D005670 7.3e-171 604.7 547 59.6
COL.COLO4_10686 Corchorus olitorius HOM05D004439 ORTHO05D005670 3.6e-170 602.4 539 61.2
Sabra03G0071700 Salix brachista HOM05D004439 ORTHO05D005670 3.6e-170 602.4 549 58.5
Dinv38840 Davidia involucrata HOM05D004439 ORTHO05D005670 4.8e-170 602.1 539 59.4
CSS0017274 Camellia sinensis var. sinensis HOM05D004439 ORTHO05D005670 3.1e-169 599.4 534 59.0
CSS0021285 Camellia sinensis var. sinensis HOM05D004439 ORTHO05D005670 3.1e-169 599.4 534 59.0
Ciclev10020115m.g Citrus clementina HOM05D004439 ORTHO05D005670 5.3e-169 598.6 532 59.2
Gohir.D12G237200 Gossypium hirsutum HOM05D004439 ORTHO05D005670 1.5e-168 597.0 538 59.5
Nn2g14269 Nelumbo nucifera HOM05D004439 ORTHO05D005670 2.0e-168 596.7 532 59.0
Gorai.008G253800 Gossypium raimondii HOM05D004439 ORTHO05D005670 9.9e-168 594.3 538 59.3
Potri.003G104700 Populus trichocarpa HOM05D004439 ORTHO05D005670 1.1e-166 590.9 530 58.9
Manes.11G128600 Manihot esculenta HOM05D004439 ORTHO05D005670 1.4e-166 590.5 533 58.5
Atru.chr9.2010 Acer truncatum HOM05D004439 ORTHO05D005670 4.2e-166 589.0 536 58.4
TWI81G0104 Tripterygium wilfordii HOM05D004439 ORTHO05D005670 2.1e-165 586.6 539 58.1
Sopen08g030490 Solanum pennellii HOM05D004439 ORTHO05D005670 7.9e-165 584.7 534 56.6
MD06G1105400 Malus domestica HOM05D004439 ORTHO05D005670 8.7e-164 581.3 528 58.3
Solyc08g082200.3 Solanum lycopersicum HOM05D004439 ORTHO05D005670 7.4e-163 578.2 534 56.0
Eucgr.E00854 Eucalyptus grandis HOM05D004439 ORTHO05D005670 9.6e-163 577.8 536 56.3
Cc08_g15970 Coffea canephora HOM05D004439 ORTHO05D005670 1.6e-162 577.0 539 56.8
EL10Ac5g12905 Beta vulgaris HOM05D004439 ORTHO05D005670 2.8e-162 576.2 540 57.6
MBI07_g27257_MAGBIO Magnolia biondii HOM05D004439 ORTHO05D005670 8.1e-162 574.7 528 58.0
Peaxi162Scf00074g01028 Petunia axillaris HOM05D004439 ORTHO05D005670 2.4e-161 573.2 531 56.7
QL02p030851 Quercus lobata HOM05D004439 ORTHO05D005670 5.3e-161 572.0 542 56.3
MSTRG.1809 Avicennia marina HOM05D004439 ORTHO05D005670 4.5e-160 568.9 538 55.9
Lalb_Chr16g0376971 Lupinus albus HOM05D004439 ORTHO05D005670 5.8e-160 568.5 526 57.0
FAN04G2433 Fragaria x ananassa HOM05D004439 ORTHO05D005670 1.7e-159 567.0 510 57.8
RcHm_v2.0_Chr7g0195041 Rosa chinensis HOM05D004439 ORTHO05D005670 2.9e-159 566.2 519 57.8
FAN18G4375 Fragaria x ananassa HOM05D004439 ORTHO05D005670 4.9e-159 565.5 517 56.9
CAN.G532.113 Capsicum annuum HOM05D004439 ORTHO05D005670 1.1e-158 564.3 539 54.9
Sc01g0010250 Simmondsia chinensis HOM05D004439 ORTHO05D005670 5.5e-158 562.0 541 54.9
FAN18G2355 Fragaria x ananassa HOM05D004439 ORTHO05D005670 1.6e-157 560.5 517 56.5
Psat5g147560 Pisum sativum HOM05D004439 ORTHO05D005670 1.3e-156 557.4 509 58.7
vmacro05785 Vaccinium macrocarpon HOM05D004439 ORTHO05D005670 1.3e-156 557.4 544 55.7
Migut.A00663 Erythranthe guttata HOM05D004439 ORTHO05D005670 3.0e-156 556.2 536 54.9
Ca_15083_v3 Cicer arietinum L. HOM05D004439 ORTHO05D005670 6.7e-156 555.1 509 58.9
FAN08G0613 Fragaria x ananassa HOM05D004439 ORTHO05D005670 6.7e-156 555.1 510 57.1
ATR0320G020 Amborella trichopoda HOM05D004439 ORTHO05D005670 4.3e-155 552.4 522 55.9
Phvul.009G207100 Phaseolus vulgaris HOM05D004439 ORTHO05D005670 5.7e-155 552.0 509 58.5
Hund11394 Selenicereus undatus HOM05D004439 ORTHO05D005670 1.3e-154 550.8 548 55.5
FvH4_5g04460 Fragaria vesca HOM05D004439 ORTHO05D005670 3.7e-154 549.3 516 56.0
Nitab4.5_0001231g0030 Nicotiana tabacum HOM05D004439 ORTHO05D005670 3.7e-154 549.3 536 55.4
arahy.Tifrunner.gnm1.ann1.FA9VAL Arachis hypogaea HOM05D004439 ORTHO05D005670 4.8e-154 548.9 540 53.0
arahy.Tifrunner.gnm1.ann1.X9M6Z3 Arachis hypogaea HOM05D004439 ORTHO05D005670 6.2e-154 548.5 540 53.0
Lsat_1_v5_gn_6_12240 Lactuca sativa HOM05D004439 ORTHO05D005670 8.2e-154 548.1 535 55.0
VMungo0647G0731 Vigna mungo HOM05D004439 ORTHO05D005670 1.1e-153 547.7 506 58.9
arahy.Tifrunner.gnm1.ann1.URL0E3 Arachis hypogaea HOM05D004439 ORTHO05D005670 2.4e-153 546.6 555 52.3
Lj1g0018659 Lotus japonicus HOM05D004439 ORTHO05D005670 3.1e-153 546.2 509 58.2
FAN13G1146 Fragaria x ananassa HOM05D004439 ORTHO05D005670 4.0e-153 545.8 510 56.7
Glyma.02G286600 Glycine max HOM05D004439 ORTHO05D005670 4.0e-153 545.8 510 57.8
Rhsim07G0082800 Rhododendron simsii HOM05D004439 ORTHO05D005670 5.3e-153 545.4 514 57.0
Aqoxy5G04196 Aquilegia oxysepala HOM05D004439 ORTHO05D005670 1.2e-152 544.3 539 55.7
Medtr3g062490 Medicago truncatula HOM05D004439 ORTHO05D005670 1.5e-152 543.9 509 57.4
SalBow1G1193 Salvia bowleyana HOM05D004439 ORTHO05D005670 1.5e-152 543.9 536 54.1
Ca_15072_v3 Cicer arietinum L. HOM05D004439 ORTHO05D005670 2.0e-152 543.5 517 57.3
HanXRQChr06g0184201 Helianthus annuus HOM05D004439 ORTHO05D005670 2.2e-151 540.0 540 53.0
Lj8C209T4 Lonicera japonica HOM05D004439 ORTHO05D005670 1.9e-150 537.0 422 64.9
AUR62019828 Chenopodium quinoa HOM05D004439 ORTHO05D005670 2.5e-150 536.6 525 55.6
DCAR_006321 Daucus carota HOM05D004439 ORTHO05D005670 5.5e-150 535.4 534 55.2
SGA_v2.0_scaffold305G47954 Striga asiatica HOM05D004439 ORTHO05D005670 1.3e-148 530.8 561 53.7
HanXRQChr05g0138501 Helianthus annuus HOM05D004439 ORTHO05D005670 1.5e-147 527.3 529 52.4
ECA233G4302 Erigeron canadensis HOM05D004439 ORTHO05D005670 2.5e-147 526.6 528 53.8
arahy.Tifrunner.gnm1.ann1.B833UN Arachis hypogaea HOM05D004439 ORTHO05D005670 3.3e-147 526.2 522 52.9
unitig_92.g28124 Utricularia gibba HOM05D004439 ORTHO05D005670 1.3e-146 524.2 555 51.2
HPP92_001766 Vanilla planifolia HOM05D004439 ORTHO05D005670 3.7e-146 522.7 569 50.4
Cpa.g.sc79.44 Carica papaya HOM05D004439 ORTHO05D005670 1.4e-145 520.8 521 55.5
Actinidia27332 Actinidia chinensis HOM05D004439 ORTHO05D005670 2.4e-145 520.0 533 54.8
AUR62010830 Chenopodium quinoa HOM05D004439 ORTHO05D005670 2.4e-145 520.0 544 52.6
CDE02G4298 Ceratophyllum demersum HOM05D004439 ORTHO05D005670 7.7e-144 515.0 526 52.1
Carub.0007s3348 Capsella rubella HOM05D004439 ORTHO05D005670 2.3e-140 503.4 538 49.6
AL7G47340 Arabidopsis lyrata HOM05D004439 ORTHO05D005670 5.1e-140 502.3 539 50.1
Aqoxy1G01152 Aquilegia oxysepala HOM05D004439 ORTHO05D005670 7.4e-139 498.4 490 55.9
Thhalv10027750m.g Eutrema salsugineum HOM05D004439 ORTHO05D005670 9.7e-139 498.0 542 50.6
CARHR212680 Cardamine hirsuta HOM05D004439 ORTHO05D005670 1.3e-138 497.7 540 50.2
Ah.12g052480 Amaranthus hybridus HOM05D004439 ORTHO05D005670 2.8e-138 496.5 546 51.3
BcaC02g08908 Brassica carinata HOM05D004439 ORTHO05D005670 2.8e-138 496.5 543 50.1
Sp7g00230 Schrenkiella parvula HOM05D004439 ORTHO05D005670 8.2e-138 495.0 538 50.6
BcaB02g07872 Brassica carinata HOM05D004439 ORTHO05D005670 1.4e-137 494.2 535 50.1
A04p15000 Brassica napus HOM05D004439 ORTHO05D005670 1.4e-137 494.2 545 50.3
BraA04t17145Z Brassica rapa HOM05D004439 ORTHO05D005670 1.8e-137 493.8 545 50.1
THA.LOC104809335 Tarenaya hassleriana HOM05D004439 ORTHO05D005670 1.8e-137 493.8 545 50.1
C04p49290 Brassica napus HOM05D004439 ORTHO05D005670 2.4e-137 493.4 545 50.1
BolC4t26514H Brassica oleracea HOM05D004439 ORTHO05D005670 2.4e-137 493.4 545 50.1
PSO384G1647 Papaver somniferum HOM05D004439 ORTHO05D005670 6.9e-137 491.9 546 49.8
AT5G41880 Arabidopsis thaliana HOM05D004439 ORTHO05D005670 1.2e-136 491.1 539 49.4
Oeu063530.1 Olea europaea HOM05D004439 ORTHO05D005670 5.9e-136 488.8 426 59.2
Lj8A194T41 Lonicera japonica HOM05D004439 ORTHO05D005670 6.5e-135 485.3 413 62.2
Gohir.A12G236000 Gossypium hirsutum HOM05D004439 ORTHO05D005670 6.1e-133 478.8 401 63.1
PSO339G0633 Papaver somniferum HOM05D004439 ORTHO05D005670 3.9e-132 476.1 545 49.7
C06p20300 Brassica napus HOM05D004439 ORTHO05D005670 3.3e-131 473.0 538 49.4
HPP92_001588 Vanilla planifolia HOM05D004439 ORTHO05D005670 3.3e-131 473.0 531 49.5
Mapoly0061s0010 Marchantia polymorpha HOM05D004439 ORTHO05D005670 5.9e-128 462.2 542 45.4
BcaB06g27677 Brassica carinata HOM05D004439 ORTHO05D005670 1.1e-126 458.0 550 47.1
SHI03128 Sapria himalayana HOM05D004439 ORTHO05D005670 1.1e-123 448.0 536 48.5
DCAR_029884 Daucus carota HOM05D004439 ORTHO05D005670 4.1e-121 439.5 463 54.0
Haze_08623 Corylus avellana HOM05D004439 ORTHO05D005670 3.5e-120 436.4 432 57.9
Rhsim09G0008900 Rhododendron simsii HOM05D004439 ORTHO05D005670 3.5e-120 436.4 556 47.1
Aa31LG9G280 Aethionema arabicum HOM05D004439 ORTHO05D005670 1.3e-119 434.5 440 53.4
A07p20990 Brassica napus HOM05D004439 ORTHO05D005670 6.5e-119 432.2 571 45.5
BcaC08g44563 Brassica carinata HOM05D004439 ORTHO05D005670 8.5e-119 431.8 486 50.6
Nitab4.5_0008661g0010 Nicotiana tabacum HOM05D004439 ORTHO05D005670 1.6e-117 427.6 516 48.1
Lj2A169G40 Lonicera japonica HOM05D004439 ORTHO05D005670 3.0e-116 423.3 356 62.6
Pp3c9_1070 Physcomitrium patens HOM05D004439 ORTHO05D005670 1.7e-114 417.5 515 44.5
CBR_g30932 Chara braunii HOM05D004439 ORTHO05D005670 8.5e-111 405.2 518 42.9
CBR_g51004 Chara braunii HOM05D004439 ORTHO05D005670 1.6e-109 401.0 551 40.1
arahy.Tifrunner.gnm1.ann1.4X43I0 Arachis hypogaea HOM05D004439 ORTHO05D005670 1.8e-108 397.5 400 53.0
AagrBONN_evm.TU.Sc2ySwM_117.2781 Anthoceros agrestis HOM05D004439 ORTHO05D005670 2.2e-106 390.6 513 42.3
TPR.G13893 Trifolium pratense HOM05D004439 ORTHO05D005670 8.3e-106 388.7 507 45.6
arahy.Tifrunner.gnm1.ann1.JNH9P6 Arachis hypogaea HOM05D004439 ORTHO05D005670 2.7e-104 383.6 464 47.8
BcaNung06856 Brassica carinata HOM05D004439 ORTHO05D005670 4.3e-94 349.7 549 41.5
SMO361G0219 Selaginella moellendorffii HOM05D004439 ORTHO05D005670 3.1e-84 317.0 393 45.8
SMO361G0316 Selaginella moellendorffii HOM05D004439 ORTHO05D005670 3.1e-84 317.0 392 46.4
Glyma.14G028200 Glycine max HOM05D004439 ORTHO05D005670 2.9e-82 310.5 373 49.1
CSS0041217 Camellia sinensis var. sinensis HOM05D004439 ORTHO05D005670 3.7e-82 310.1 536 39.2
MD14G1127500 Malus domestica HOM05D004439 ORTHO05D005670 3.2e-81 307.0 308 56.8
Zm00001eb346380 Zea mays HOM05D004439 ORTHO05D005670 1.6e-80 304.7 373 47.7
RcHm_v2.0_Chr6g0245391 Rosa chinensis HOM05D004439 ORTHO05D005670 1.3e-74 285.0 261 57.9
RcHm_v2.0_Chr6g0245381 Rosa chinensis HOM05D004439 ORTHO05D005670 7.8e-72 275.8 179 71.5
Cre07.g312350 Chlamydomonas reinhardtii HOM05D004439 ORTHO05D005670 1.4e-68 265.0 403 37.0
RcHm_v2.0_Chr5g0068871 Rosa chinensis HOM05D004439 ORTHO05D005670 1.4e-68 265.0 308 48.4
Cfa025390 Carpinus fangiana HOM05D004439 ORTHO05D005670 9.6e-62 242.3 399 34.3
PRCOL_00003494 Prasinoderma coloniale HOM05D004439 ORTHO05D005670 1.1e-57 228.8 412 34.5
TPR.G9934 Trifolium pratense HOM05D004439 ORTHO05D005670 1.9e-46 191.4 263 46.4
PSO063G0793 Papaver somniferum HOM05D004439 ORTHO05D005670 1.3e-45 188.7 128 67.2
MELO3C031246.2 Cucumis melo HOM05D004439 ORTHO05D005670 1.4e-41 175.3 122 74.6
TPR.G191 Trifolium pratense HOM05D004439 ORTHO05D005670 3.2e-41 174.1 126 70.6
Os05g0358200 Oryza sativa ssp. japonica HOM05D004439 ORTHO05D005670 2.0e-35 154.8 85 85.9
AL3G52130 Arabidopsis lyrata HOM05D004439 ORTHO05D005670 1.0e-34 152.5 292 37.0
AL1G55640 Arabidopsis lyrata HOM05D004439 ORTHO05D005670 3.8e-34 150.6 290 36.9
MD14G1127600 Malus domestica HOM05D004439 ORTHO05D005670 4.6e-32 143.7 157 47.1
PGSC0003DMG400012290 Solanum tuberosum HOM05D004439 ORTHO05D005670 6.1e-32 143.3 267 34.8
MELO3C027184.2 Cucumis melo HOM05D004439 ORTHO05D005670 1.4e-28 132.1 154 53.9
SEGI_14966 Sequoiadendron giganteum HOM05D004439 ORTHO05D005670 2.3e-23 114.8 231 35.5
AL2G23180 Arabidopsis lyrata HOM05D004439 ORTHO05D005670 9.7e-22 109.4 290 31.7
MD06G1072700 Malus domestica HOM05D004439 ORTHO05D005670 1.4e-20 105.5 62 75.8
TPR.G9939 Trifolium pratense HOM05D004439 ORTHO05D005670 3.4e-19 100.9 87 60.9
SEGI_35904 Sequoiadendron giganteum HOM05D004439 ORTHO05D000007 1.6e-16 92.0 130 41.5
AL1G44430 Arabidopsis lyrata HOM05D004439 ORTHO05D005670 2.7e-16 91.3 133 40.6
Lj2A169G39 Lonicera japonica HOM05D004439 ORTHO05D005670 5.1e-15 87.0 119 37.0
Actinidia27323 Actinidia chinensis HOM05D004439 ORTHO05D005670 2.2e-13 81.6 79 55.7
TPR.G22107 Trifolium pratense HOM05D004439 ORTHO05D005670 2.6e-11 74.7 127 39.4
Actinidia22721 Actinidia chinensis HOM05D004439 ORTHO05D057326 1.1e-09 69.3 61 60.7
TPR.G3794 Trifolium pratense HOM05D004439 ORTHO05D005670 3.0e-07 61.2 59 50.8


User provided reference genes

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