Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG08G001110 Citrullus lanatus HOM05D007718 ORTHO05D009752 1.8e-57 225.7 113 100.0
MELO3C022171.2 Cucumis melo HOM05D007718 ORTHO05D009752 6.5e-44 180.6 110 83.6
Sed0001698 Sechium edule HOM05D007718 ORTHO05D009752 5.4e-38 161.0 102 75.5
Dinv22108 Davidia involucrata HOM05D007718 ORTHO05D009752 4.5e-29 131.3 102 62.7
Thecc.08G178100 Theobroma cacao HOM05D007718 ORTHO05D009752 1.3e-28 129.8 87 71.3
Actinidia04142 Actinidia chinensis HOM05D007718 ORTHO05D009752 2.9e-28 128.6 108 60.2
Prupe.8G007200 Prunus persica HOM05D007718 ORTHO05D009752 2.9e-28 128.6 92 65.2
QL08p027549 Quercus lobata HOM05D007718 ORTHO05D009752 5.0e-28 127.9 98 62.2
GSVIVG01036292001 Vitis vinifera HOM05D007718 ORTHO05D009752 1.5e-27 126.3 93 64.5
Duzib177G0547 Durio zibethinus HOM05D007718 ORTHO05D009752 4.3e-27 124.8 88 65.9
Nn5g27289 Nelumbo nucifera HOM05D007718 ORTHO05D009752 9.5e-27 123.6 106 57.5
PSO170G0967 Papaver somniferum HOM05D007718 ORTHO05D009752 9.5e-27 123.6 93 61.3
FAN27G3322 Fragaria x ananassa HOM05D007718 ORTHO05D009752 1.2e-26 123.2 106 56.6
PSO017G4737 Papaver somniferum HOM05D007718 ORTHO05D009752 1.6e-26 122.9 99 56.6
RcHm_v2.0_Chr6g0251251 Rosa chinensis HOM05D007718 ORTHO05D009752 1.6e-26 122.9 101 59.4
TWI18G0705 Tripterygium wilfordii HOM05D007718 ORTHO05D009752 2.8e-26 122.1 86 66.3
Rhsim01G0004700 Rhododendron simsii HOM05D007718 ORTHO05D009752 6.1e-26 120.9 94 58.5
Gohir.A08G230000 Gossypium hirsutum HOM05D007718 ORTHO05D009752 1.8e-25 119.4 87 64.4
Potri.019G071800 Populus trichocarpa HOM05D007718 ORTHO05D009752 2.3e-25 119.0 92 60.9
MD05G1004000 Malus domestica HOM05D007718 ORTHO05D009752 3.0e-25 118.6 86 68.6
CiPaw.04G009400 Carya illinoinensis HOM05D007718 ORTHO05D009752 4.0e-25 118.2 97 57.7
Aqoxy5G00833 Aquilegia oxysepala HOM05D007718 ORTHO05D009752 5.2e-25 117.9 95 56.8
CANSAT21G0081 Cannabis sativa HOM05D007718 ORTHO05D009752 5.2e-25 117.9 92 62.0
CANSAT21G2143 Cannabis sativa HOM05D007718 ORTHO05D009752 5.2e-25 117.9 92 62.0
Atru.chr13.2493 Acer truncatum HOM05D007718 ORTHO05D009752 6.8e-25 117.5 99 54.5
Manes.02G201400 Manihot esculenta HOM05D007718 ORTHO05D009752 6.8e-25 117.5 93 58.1
Gohir.D08G250400 Gossypium hirsutum HOM05D007718 ORTHO05D009752 2.0e-24 115.9 87 62.1
Gorai.004G267100 Gossypium raimondii HOM05D007718 ORTHO05D009752 2.0e-24 115.9 87 62.1
Lalb_Chr03g0041731 Lupinus albus HOM05D007718 ORTHO05D009752 2.0e-24 115.9 100 56.0
Manes.02G205384 Manihot esculenta HOM05D007718 ORTHO05D009752 2.0e-24 115.9 93 57.0
Manes.02G221600 Manihot esculenta HOM05D007718 ORTHO05D009752 2.0e-24 115.9 93 57.0
Phvul.008G126000 Phaseolus vulgaris HOM05D007718 ORTHO05D009752 2.0e-24 115.9 90 61.1
Manes.02G201100 Manihot esculenta HOM05D007718 ORTHO05D009752 2.6e-24 115.5 93 57.0
CsaV3_5G039910 Cucumis sativus L. HOM05D007718 ORTHO05D009752 3.4e-24 115.2 67 88.1
Glyma.08G353800 Glycine max HOM05D007718 ORTHO05D009752 4.4e-24 114.8 88 61.4
Atru.chr13.2505 Acer truncatum HOM05D007718 ORTHO05D009752 7.5e-24 114.0 99 53.5
COL.COLO4_05200 Corchorus olitorius HOM05D007718 ORTHO05D009752 2.2e-23 112.5 90 60.0
Migut.C01378 Erythranthe guttata HOM05D007718 ORTHO05D009752 2.9e-23 112.1 89 53.9
arahy.Tifrunner.gnm1.ann1.KNF5LM Arachis hypogaea HOM05D007718 ORTHO05D009752 3.7e-23 111.7 91 58.2
Ah.05g170340 Amaranthus hybridus HOM05D007718 ORTHO05D009752 4.9e-23 111.3 95 55.8
Ciclev10022933m.g Citrus clementina HOM05D007718 ORTHO05D009752 4.9e-23 111.3 87 62.1
Ca_07513_v3 Cicer arietinum L. HOM05D007718 ORTHO05D009752 6.4e-23 110.9 87 57.5
SGA_v2.0_scaffold24G10646 Striga asiatica HOM05D007718 ORTHO05D009752 6.4e-23 110.9 88 54.5
Medtr7g057760 Medicago truncatula HOM05D007718 ORTHO05D009752 1.1e-22 110.2 87 58.6
arahy.Tifrunner.gnm1.ann1.NNV5AG Arachis hypogaea HOM05D007718 ORTHO05D009752 1.8e-22 109.4 91 57.1
TPR.G23283 Trifolium pratense HOM05D007718 ORTHO05D009752 2.4e-22 109.0 88 58.0
EL10Ac1g01266 Beta vulgaris HOM05D007718 ORTHO05D009752 4.1e-22 108.2 95 54.7
CDE04G1586 Ceratophyllum demersum HOM05D007718 ORTHO05D009752 3.5e-21 105.1 87 54.0
THA.LOC104807782 Tarenaya hassleriana HOM05D007718 ORTHO05D009752 3.5e-21 105.1 99 53.5
MSTRG.1597 Avicennia marina HOM05D007718 ORTHO05D009752 4.6e-21 104.8 85 55.3
TAR383G0451 Trochodendron aralioides HOM05D007718 ORTHO05D009752 7.8e-21 104.0 68 69.1
ECA232G2296 Erigeron canadensis HOM05D005243 ORTHO05D006670 3.9e-20 101.7 89 53.9
Lsat_1_v5_gn_3_36061 Lactuca sativa HOM05D007718 ORTHO05D009752 8.6e-20 100.5 79 60.8
unitig_26.g9859 Utricularia gibba HOM05D007718 ORTHO05D009752 3.3e-19 98.6 72 59.7
FvH4_2g00852 Fragaria vesca HOM05D007718 ORTHO05D009752 3.6e-18 95.1 70 62.9
HPP92_012514 Vanilla planifolia HOM05D007718 ORTHO05D009752 3.6e-18 95.1 86 51.2
C04p50420 Brassica napus HOM05D007718 ORTHO05D009752 1.1e-17 93.6 76 59.2
BolC4t26639H Brassica oleracea HOM05D007718 ORTHO05D009752 1.1e-17 93.6 76 59.2
ATR1089G029 Amborella trichopoda HOM05D007718 ORTHO05D009752 1.4e-17 93.2 93 45.2
AL4G10300 Arabidopsis lyrata HOM05D007718 ORTHO05D009752 4.0e-17 91.7 52 75.0
CARHR112060 Cardamine hirsuta HOM05D007718 ORTHO05D009752 5.2e-17 91.3 63 65.1
A04p15950 Brassica napus HOM05D007718 ORTHO05D009752 6.8e-17 90.9 74 59.5
Thhalv10000395m.g Eutrema salsugineum HOM05D007718 ORTHO05D009752 1.2e-16 90.1 52 75.0
AT2G21195 Arabidopsis thaliana HOM05D007718 ORTHO05D009752 1.5e-16 89.7 50 76.0
HanXRQChr09g0267041 Helianthus annuus HOM05D007718 ORTHO05D009752 2.6e-16 89.0 90 51.1
BraA04t17231Z Brassica rapa HOM05D007718 ORTHO05D009752 3.4e-16 88.6 63 65.1
Nn5g31449 Nelumbo nucifera HOM05D007718 ORTHO05D009752 3.4e-16 88.6 66 65.2
Carub.0004s0023 Capsella rubella HOM05D007718 ORTHO05D009752 1.3e-15 86.7 52 69.2
SalBow7G2847 Salvia bowleyana HOM05D007718 ORTHO05D009752 2.9e-15 85.5 114 43.0
CSS0008152 Camellia sinensis var. sinensis HOM05D007718 ORTHO05D009752 4.9e-15 84.7 49 73.5
Peaxi162Scf00048g00419 Petunia axillaris HOM05D007718 ORTHO05D009752 4.9e-15 84.7 47 76.6
Psat3g145480 Pisum sativum HOM05D007718 ORTHO05D009752 1.9e-14 82.8 74 50.0
FAN20G0290 Fragaria x ananassa HOM05D005243 ORTHO05D009752 2.4e-14 82.4 75 56.0
Lj1g0018023 Lotus japonicus HOM05D007718 ORTHO05D009752 2.4e-14 82.4 88 52.3
vmacro13123 Vaccinium macrocarpon HOM05D007718 ORTHO05D009752 3.2e-14 82.0 59 61.0
Os07g0265100 Oryza sativa ssp. japonica HOM05D007718 ORTHO05D009752 2.7e-13 79.0 67 52.2
AUR62038531 Chenopodium quinoa HOM05D007718 ORTHO05D009752 3.5e-13 78.6 80 47.5
Cc10_g08650 Coffea canephora HOM05D007718 ORTHO05D009752 1.0e-12 77.0 79 40.5
SEGI_14522 Sequoiadendron giganteum HOM05D007718 ORTHO05D009752 1.0e-12 77.0 87 43.7
Zm00001eb304750 Zea mays HOM05D007718 ORTHO05D009752 1.3e-12 76.6 65 49.2
Mapoly0002s0003 Marchantia polymorpha HOM05D007718 ORTHO05D009752 1.2e-10 70.1 69 46.4
Oeu020544.1 Olea europaea HOM05D007718 ORTHO05D009752 1.2e-10 70.1 91 40.7
BcaC02g08810 Brassica carinata HOM05D007718 ORTHO05D009752 3.6e-10 68.6 60 56.7
AagrBONN_evm.TU.Sc2ySwM_344.3280 Anthoceros agrestis HOM05D007718 ORTHO05D009752 6.2e-10 67.8 61 50.8
Aa31LG7G15310 Aethionema arabicum HOM05D007718 ORTHO05D009752 4.0e-09 65.1 56 57.1
Aa31sc115G10 Aethionema arabicum HOM05D007718 ORTHO05D009752 6.8e-09 64.3 39 69.2
VMungo1383G3332 Vigna mungo HOM05D000479 ORTHO05D001285 4.9e-07 58.2 36 69.4


User provided reference genes

Program Settings