Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG08G001090 Citrullus lanatus HOM05D007049 ORTHO05D008896 1.1e-60 236.5 123 100.0
MELO3C022175.2 Cucumis melo HOM05D007049 ORTHO05D008896 1.2e-30 136.7 81 90.1
Sed0002937 Sechium edule HOM05D007049 ORTHO05D008896 1.2e-30 136.7 83 86.7
CsaV3_5G039970 Cucumis sativus L. HOM05D007049 ORTHO05D008896 3.4e-30 135.2 81 88.9
Gohir.A13G115800 Gossypium hirsutum HOM05D007049 ORTHO05D008896 9.3e-28 127.1 83 79.5
EL10Ac7g16149 Beta vulgaris HOM05D007049 ORTHO05D008896 1.0e-26 123.6 82 79.3
Cpa.g.sc19.285 Carica papaya HOM05D007049 ORTHO05D008896 1.0e-26 123.6 81 77.8
Gohir.D13G119000 Gossypium hirsutum HOM05D007049 ORTHO05D008896 1.3e-26 123.2 83 77.1
Gorai.013G133400 Gossypium raimondii HOM05D007049 ORTHO05D008896 1.3e-26 123.2 83 77.1
TWI12G1157 Tripterygium wilfordii HOM05D007049 ORTHO05D008896 1.8e-26 122.9 83 75.9
Duzib177G1207 Durio zibethinus HOM05D007049 ORTHO05D008896 2.3e-26 122.5 83 77.1
QL04p010524 Quercus lobata HOM05D007049 ORTHO05D008896 2.3e-26 122.5 81 79.0
PGR042G0623 Punica granatum HOM05D007049 ORTHO05D008896 3.0e-26 122.1 83 75.9
Thecc.08G177900 Theobroma cacao HOM05D007049 ORTHO05D008896 3.0e-26 122.1 83 79.5
CiPaw.15G066500 Carya illinoinensis HOM05D007049 ORTHO05D008896 3.9e-26 121.7 83 72.3
PGSC0003DMG401002024 Solanum tuberosum HOM05D007049 ORTHO05D008896 3.9e-26 121.7 83 74.7
Solyc09g007070.1 Solanum lycopersicum HOM05D007049 ORTHO05D008896 5.1e-26 121.3 83 74.7
Sopen09g001930 Solanum pennellii HOM05D007049 ORTHO05D008896 5.1e-26 121.3 83 74.7
COL.COLO4_06913 Corchorus olitorius HOM05D007049 ORTHO05D008896 6.7e-26 120.9 81 75.3
Ah.05g168610 Amaranthus hybridus HOM05D007049 ORTHO05D008896 1.1e-25 120.2 82 76.8
Nitab4.5_0000213g0160 Nicotiana tabacum HOM05D007049 ORTHO05D008896 1.1e-25 120.2 83 75.9
MBI13_g15314_MAGBIO Magnolia biondii HOM05D007049 ORTHO05D008896 1.5e-25 119.8 81 74.1
CAN.G4100.1 Capsicum annuum HOM05D007049 ORTHO05D008896 1.9e-25 119.4 83 73.5
CAN.G608.33 Capsicum annuum HOM05D007049 ORTHO05D008896 1.9e-25 119.4 83 73.5
Nitab4.5_0000398g0030 Nicotiana tabacum HOM05D007049 ORTHO05D008896 2.5e-25 119.0 83 75.9
Eucgr.F02581 Eucalyptus grandis HOM05D007049 ORTHO05D008896 3.3e-25 118.6 79 74.7
Peaxi162Scf00078g00061 Petunia axillaris HOM05D007049 ORTHO05D008896 3.3e-25 118.6 81 74.1
Sabra01G0012500 Salix brachista HOM05D007049 ORTHO05D008896 3.3e-25 118.6 81 75.3
Cfa019294 Carpinus fangiana HOM05D007049 ORTHO05D008896 4.3e-25 118.2 92 68.5
MBI13_g30327_MAGBIO Magnolia biondii HOM05D007049 ORTHO05D008896 4.3e-25 118.2 81 72.8
Oeu023195.1 Olea europaea HOM05D007049 ORTHO05D008896 4.3e-25 118.2 81 75.3
Rhsim08G0116100 Rhododendron simsii HOM05D007049 ORTHO05D008896 5.7e-25 117.9 80 78.8
CANSAT25G3584 Cannabis sativa HOM05D007049 ORTHO05D008896 7.4e-25 117.5 81 76.5
AUR62022356 Chenopodium quinoa HOM05D007049 ORTHO05D008896 9.7e-25 117.1 82 73.2
AUR62034352 Chenopodium quinoa HOM05D007049 ORTHO05D008896 9.7e-25 117.1 82 73.2
THA.LOC104824284 Tarenaya hassleriana HOM05D007049 ORTHO05D008896 9.7e-25 117.1 83 75.9
Nn5g27287 Nelumbo nucifera HOM05D007049 ORTHO05D008896 1.3e-24 116.7 83 72.3
ECA248G1776 Erigeron canadensis HOM05D007049 ORTHO05D008896 1.6e-24 116.3 78 76.9
Ca_24471_v3 Cicer arietinum L. HOM05D007049 ORTHO05D008896 2.2e-24 115.9 81 69.1
Hma1.2p1_0400F.1_g144580 Hydrangea macrophylla HOM05D007049 ORTHO05D008896 2.8e-24 115.5 81 75.3
CSS0000179 Camellia sinensis var. sinensis HOM05D007049 ORTHO05D008896 3.7e-24 115.2 82 72.0
Migut.C01376 Erythranthe guttata HOM05D007049 ORTHO05D008896 3.7e-24 115.2 81 70.4
Lalb_Chr03g0041921 Lupinus albus HOM05D007049 ORTHO05D008896 3.7e-24 115.2 81 72.8
Prupe.8G009200 Prunus persica HOM05D007049 ORTHO05D008896 3.7e-24 115.2 81 71.6
TAR624G0348 Trochodendron aralioides HOM05D007049 ORTHO05D008896 3.7e-24 115.2 81 76.5
LjContig00222g0016429 Lotus japonicus HOM05D007049 ORTHO05D008896 4.8e-24 114.8 81 71.6
TAR624G1340 Trochodendron aralioides HOM05D007049 ORTHO05D008896 4.8e-24 114.8 81 75.3
HanXRQChr04g0114811 Helianthus annuus HOM05D007049 ORTHO05D008896 6.3e-24 114.4 81 71.6
MD10G1006000 Malus domestica HOM05D007049 ORTHO05D008896 6.3e-24 114.4 81 71.6
Glyma.11G013800 Glycine max HOM05D007049 ORTHO05D008896 8.2e-24 114.0 79 73.4
TPR.G37942 Trifolium pratense HOM05D007049 ORTHO05D008896 8.2e-24 114.0 81 70.4
FAN08G2573 Fragaria x ananassa HOM05D007049 ORTHO05D008896 1.1e-23 113.6 79 73.4
Carub.0004s2178 Capsella rubella HOM05D007049 ORTHO05D008896 1.4e-23 113.2 82 74.4
Ciclev10023082m.g Citrus clementina HOM05D007049 ORTHO05D008896 1.4e-23 113.2 77 76.6
Cc10_g08690 Coffea canephora HOM05D007049 ORTHO05D008896 1.4e-23 113.2 83 71.1
Phvul.002G036400 Phaseolus vulgaris HOM05D007049 ORTHO05D008896 1.4e-23 113.2 79 72.2
Prupe.8G008400 Prunus persica HOM05D007049 ORTHO05D008896 1.4e-23 113.2 81 70.4
DCAR_017595 Daucus carota HOM05D007049 ORTHO05D008896 2.4e-23 112.5 81 71.6
FAN18G1167 Fragaria x ananassa HOM05D007049 ORTHO05D008896 2.4e-23 112.5 81 71.6
FAN18G2563 Fragaria x ananassa HOM05D007049 ORTHO05D008896 2.4e-23 112.5 81 71.6
VMungo1215G2220 Vigna mungo HOM05D007049 ORTHO05D008896 2.4e-23 112.5 79 72.2
DCAR_006853 Daucus carota HOM05D007049 ORTHO05D008896 4.1e-23 111.7 81 71.6
PSO017G7166 Papaver somniferum HOM05D007049 ORTHO05D008896 4.1e-23 111.7 76 75.0
RcHm_v2.0_Chr7g0212551 Rosa chinensis HOM05D007049 ORTHO05D008896 5.3e-23 111.3 81 70.4
Sc20g0003280 Simmondsia chinensis HOM05D007049 ORTHO05D008896 5.3e-23 111.3 73 78.1
BcaC02g07431 Brassica carinata HOM05D007049 ORTHO05D008896 6.9e-23 110.9 81 70.4
C04p67530 Brassica napus HOM05D007049 ORTHO05D008896 6.9e-23 110.9 81 70.4
Psat2g187280 Pisum sativum HOM05D007049 ORTHO05D008896 6.9e-23 110.9 79 72.2
RcHm_v2.0_Chr6g0251481 Rosa chinensis HOM05D007049 ORTHO05D008896 6.9e-23 110.9 82 69.5
Sabra01G0012700 Salix brachista HOM05D007049 ORTHO05D008896 6.9e-23 110.9 77 75.3
SalBow7G2968 Salvia bowleyana HOM05D007049 ORTHO05D008896 6.9e-23 110.9 84 65.5
HanXRQChr10g0289041 Helianthus annuus HOM05D007049 ORTHO05D008896 9.0e-23 110.5 81 71.6
RcHm_v2.0_Chr7g0212501 Rosa chinensis HOM05D007049 ORTHO05D008896 9.0e-23 110.5 81 70.4
AT2G39725 Arabidopsis thaliana HOM05D007049 ORTHO05D008896 1.2e-22 110.2 82 70.7
Psat7g180160 Pisum sativum HOM05D007049 ORTHO05D008896 1.5e-22 109.8 79 72.2
RcHm_v2.0_Chr7g0212661 Rosa chinensis HOM05D007049 ORTHO05D008896 1.5e-22 109.8 81 69.1
AL4G37190 Arabidopsis lyrata HOM05D007049 ORTHO05D008896 3.4e-22 108.6 82 69.5
CARHR134570 Cardamine hirsuta HOM05D007049 ORTHO05D008896 3.4e-22 108.6 81 71.6
Thhalv10017481m.g Eutrema salsugineum HOM05D007049 ORTHO05D008896 3.4e-22 108.6 81 69.1
Aa31LG5G19930 Aethionema arabicum HOM05D007049 ORTHO05D008896 4.5e-22 108.2 78 73.1
Medtr5g008340 Medicago truncatula HOM05D007049 ORTHO05D008896 7.6e-22 107.5 79 69.6
BcaB06g29104 Brassica carinata HOM05D007049 ORTHO05D008896 1.0e-21 107.1 82 69.5
BolC4t28250H Brassica oleracea HOM05D007049 ORTHO05D008896 1.0e-21 107.1 82 69.5
Zm00001eb026180 Zea mays HOM05D007049 ORTHO05D008896 1.0e-21 107.1 81 64.2
arahy.Tifrunner.gnm1.ann1.6H88WF Arachis hypogaea HOM05D007049 ORTHO05D008896 1.3e-21 106.7 81 66.7
A04p30310 Brassica napus HOM05D007049 ORTHO05D008896 1.3e-21 106.7 82 68.3
Os08g0278600 Oryza sativa ssp. japonica HOM05D007049 ORTHO05D008896 1.3e-21 106.7 82 64.6
Psat7g180120 Pisum sativum HOM05D007049 ORTHO05D008896 1.7e-21 106.3 79 69.6
Sp4g21990 Schrenkiella parvula HOM05D007049 ORTHO05D008896 1.7e-21 106.3 82 67.1
BraA04t18476Z Brassica rapa HOM05D007049 ORTHO05D008896 2.2e-21 105.9 82 68.3
Prupe.8G008800 Prunus persica HOM05D007049 ORTHO05D008896 2.2e-21 105.9 68 76.5
HPP92_017350 Vanilla planifolia HOM05D007049 ORTHO05D008896 2.9e-21 105.5 83 62.7
Psat7g180080 Pisum sativum HOM05D007049 ORTHO05D008896 5.0e-21 104.8 90 62.2
unitig_46.g17984 Utricularia gibba HOM05D007049 ORTHO05D008896 5.0e-21 104.8 81 67.9
Psat7g195680 Pisum sativum HOM05D007049 ORTHO05D008896 8.5e-21 104.0 79 69.6
Aqoxy3G02546 Aquilegia oxysepala HOM05D007049 ORTHO05D008896 1.4e-20 103.2 78 66.7
Potri.001G018100 Populus trichocarpa HOM05D007049 ORTHO05D008896 3.2e-20 102.1 60 85.0
arahy.Tifrunner.gnm1.ann1.CT79FY Arachis hypogaea HOM05D007049 ORTHO05D008896 9.3e-20 100.5 77 66.2
FAN04G0010 Fragaria x ananassa HOM05D007049 ORTHO05D008896 9.3e-20 100.5 72 72.2
SMO353G0203 Selaginella moellendorffii HOM05D007049 ORTHO05D008896 3.6e-19 98.6 72 70.8
SHI21473 Sapria himalayana HOM05D000105 ORTHO05D000023 4.6e-19 98.2 69 69.6
Manes.01G011600 Manihot esculenta HOM05D007049 ORTHO05D008896 1.4e-18 96.7 60 80.0
Pp3c4_6780 Physcomitrium patens HOM05D007049 ORTHO05D008896 8.8e-18 94.0 81 65.4
SGA_v2.0_scaffold118G32610 Striga asiatica HOM05D007049 ORTHO05D008896 1.9e-17 92.8 65 69.2
ATR0057G071 Amborella trichopoda HOM05D007049 ORTHO05D008896 3.3e-17 92.0 82 56.1
FAN13G1882 Fragaria x ananassa HOM05D007049 ORTHO05D008896 5.7e-17 91.3 70 67.1
Prupe.8G009100 Prunus persica HOM05D007049 ORTHO05D008896 6.9e-15 84.3 93 54.8
Mapoly0004s0187 Marchantia polymorpha HOM05D007049 ORTHO05D008896 9.1e-15 84.0 71 62.0
MD05G1008200 Malus domestica HOM05D007049 ORTHO05D008896 1.4e-12 76.6 58 67.2
MCO05G024 Micromonas commoda HOM05D007049 ORTHO05D008896 7.0e-07 57.8 79 43.0
Lsat_1_v5_gn_1_45401 Lactuca sativa HOM05D007049 ORTHO05D008896 1.2e-06 57.0 43 65.1


User provided reference genes

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