Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG08G000030 Citrullus lanatus HOM05D004131 ORTHO05D004778 2.1e-103 379.4 247 100.0
MELO3C022231.2 Cucumis melo HOM05D004131 ORTHO05D004778 1.3e-31 141.0 162 56.2
CsaV3_5G040580 Cucumis sativus L. HOM05D004131 ORTHO05D004778 3.2e-27 126.3 111 67.6
Sed0002263 Sechium edule HOM05D004131 ORTHO05D004778 5.8e-21 105.5 156 75.0
GSVIVG01038193001 Vitis vinifera HOM05D004131 ORTHO05D004778 5.8e-21 105.5 111 58.6
Gohir.D10G120800 Gossypium hirsutum HOM05D004131 ORTHO05D004778 1.0e-20 104.8 111 58.6
Gorai.011G132700 Gossypium raimondii HOM05D004131 ORTHO05D004778 1.0e-20 104.8 111 58.6
Potri.007G139900 Populus trichocarpa HOM05D004131 ORTHO05D004778 1.0e-20 104.8 111 57.7
TWI63G0908 Tripterygium wilfordii HOM05D004131 ORTHO05D004778 1.7e-20 104.0 111 56.8
Duzib268G1863 Durio zibethinus HOM05D004131 ORTHO05D004778 2.2e-20 103.6 111 56.8
FvH4_1g00470 Fragaria vesca HOM05D004131 ORTHO05D004778 2.2e-20 103.6 111 57.7
Gohir.A10G146200 Gossypium hirsutum HOM05D004131 ORTHO05D004778 2.2e-20 103.6 111 57.7
Sabra07G0113200 Salix brachista HOM05D004131 ORTHO05D004778 2.2e-20 103.6 111 56.8
Sabra07G0117600 Salix brachista HOM05D004131 ORTHO05D004778 2.2e-20 103.6 111 56.8
Nn7g37517 Nelumbo nucifera HOM05D004131 ORTHO05D004778 2.9e-20 103.2 113 56.6
Manes.01G017500 Manihot esculenta HOM05D004131 ORTHO05D004778 4.9e-20 102.4 111 58.6
FAN28G1052 Fragaria x ananassa HOM05D004131 ORTHO05D004778 6.5e-20 102.1 111 56.8
TWI38G2196 Tripterygium wilfordii HOM05D004131 ORTHO05D004778 6.5e-20 102.1 111 56.8
Atru.chr4.1513 Acer truncatum HOM05D004131 ORTHO05D004778 8.4e-20 101.7 111 57.7
Cfa021469 Carpinus fangiana HOM05D004131 ORTHO05D004778 1.9e-19 100.5 111 55.0
MD02G1003900 Malus domestica HOM05D004131 ORTHO05D004778 3.2e-19 99.8 111 55.9
Potri.017G010100 Populus trichocarpa HOM05D004131 ORTHO05D004778 3.2e-19 99.8 111 55.0
FAN23G0024 Fragaria x ananassa HOM05D004131 ORTHO05D004778 5.5e-19 99.0 107 57.9
FAN26G1335 Fragaria x ananassa HOM05D004131 ORTHO05D004778 5.5e-19 99.0 107 57.9
RcHm_v2.0_Chr2g0084981 Rosa chinensis HOM05D004131 ORTHO05D004778 5.5e-19 99.0 107 57.9
Haze_11173 Corylus avellana HOM05D004131 ORTHO05D004778 7.1e-19 98.6 113 53.1
Haze_11178 Corylus avellana HOM05D004131 ORTHO05D004778 7.1e-19 98.6 113 53.1
Dinv33225 Davidia involucrata HOM05D004131 ORTHO05D004778 7.1e-19 98.6 111 55.9
Ca_18622_v3 Cicer arietinum L. HOM05D004131 ORTHO05D004778 9.3e-19 98.2 111 55.0
Ca_18628_v3 Cicer arietinum L. HOM05D004131 ORTHO05D004778 9.3e-19 98.2 111 55.0
COL.COLO4_04655 Corchorus olitorius HOM05D004131 ORTHO05D004778 1.6e-18 97.4 111 56.8
PSO675G2278 Papaver somniferum HOM05D004131 ORTHO05D004778 1.6e-18 97.4 112 56.2
MD15G1147200 Malus domestica HOM05D004131 ORTHO05D004778 2.1e-18 97.1 107 56.1
Prupe.7G267400 Prunus persica HOM05D004131 ORTHO05D004778 2.1e-18 97.1 118 52.5
Ciclev10022332m.g Citrus clementina HOM05D004131 ORTHO05D004778 2.7e-18 96.7 111 55.9
Dinv18309 Davidia involucrata HOM05D004131 ORTHO05D004778 2.7e-18 96.7 111 55.9
Duzib212G0438 Durio zibethinus HOM05D004131 ORTHO05D004778 2.7e-18 96.7 111 54.1
Glyma.07G206100 Glycine max HOM05D004131 ORTHO05D004778 3.5e-18 96.3 111 54.1
Phvul.003G059400 Phaseolus vulgaris HOM05D004131 ORTHO05D004778 3.5e-18 96.3 109 55.0
TPR.G23549 Trifolium pratense HOM05D004131 ORTHO05D004778 3.5e-18 96.3 109 55.0
unitig_8.g3637 Utricularia gibba HOM05D004131 ORTHO05D004778 6.0e-18 95.5 111 53.2
Ah.13g073340 Amaranthus hybridus HOM05D004131 ORTHO05D004778 7.9e-18 95.1 143 44.8
Glyma.02G138900 Glycine max HOM05D004131 ORTHO05D004778 7.9e-18 95.1 111 53.2
Lalb_Chr16g0384341 Lupinus albus HOM05D004131 ORTHO05D004778 1.0e-17 94.7 111 52.3
ATR0743G176 Amborella trichopoda HOM05D004131 ORTHO05D004778 1.3e-17 94.4 112 53.6
Migut.G00833 Erythranthe guttata HOM05D004131 ORTHO05D004778 1.3e-17 94.4 111 52.3
TAR636G2398 Trochodendron aralioides HOM05D004131 ORTHO05D004778 1.3e-17 94.4 111 55.0
CSS0004184 Camellia sinensis var. sinensis HOM05D004131 ORTHO05D004778 1.8e-17 94.0 111 54.1
CSS0028329 Camellia sinensis var. sinensis HOM05D004131 ORTHO05D004778 1.8e-17 94.0 111 54.1
Migut.N03052 Erythranthe guttata HOM05D004131 ORTHO05D004778 1.8e-17 94.0 208 54.8
Medtr4g087630 Medicago truncatula HOM05D004131 ORTHO05D004778 1.8e-17 94.0 109 53.2
Psat7g119160 Pisum sativum HOM05D004131 ORTHO05D004778 1.8e-17 94.0 107 55.1
Lj4g0014155 Lotus japonicus HOM05D004131 ORTHO05D004778 3.0e-17 93.2 111 51.4
CiPaw.01G198800 Carya illinoinensis HOM05D004131 ORTHO05D004778 3.9e-17 92.8 106 56.6
HPP92_023727 Vanilla planifolia HOM05D004131 ORTHO05D004778 3.9e-17 92.8 111 53.2
CiPaw.02G123300 Carya illinoinensis HOM05D004131 ORTHO05D004778 5.1e-17 92.4 103 56.3
PSO017G4173 Papaver somniferum HOM05D004131 ORTHO05D004778 5.1e-17 92.4 108 56.5
Aqoxy2G04165 Aquilegia oxysepala HOM05D004131 ORTHO05D004778 6.7e-17 92.0 111 52.3
ECA130G0002 Erigeron canadensis HOM05D004131 ORTHO05D004778 8.7e-17 91.7 111 50.5
Solyc12g019470.2 Solanum lycopersicum HOM05D004131 ORTHO05D004778 8.7e-17 91.7 106 53.8
Sopen12g009750 Solanum pennellii HOM05D004131 ORTHO05D004778 8.7e-17 91.7 106 53.8
MSTRG.24561 Avicennia marina HOM05D004131 ORTHO05D004778 1.9e-16 90.5 111 50.5
MBI07_g36705_MAGBIO Magnolia biondii HOM05D004131 ORTHO05D004778 2.5e-16 90.1 108 54.6
CANSAT56G2001 Cannabis sativa HOM05D004131 ORTHO05D004778 3.3e-16 89.7 103 54.4
CDE08G0022 Ceratophyllum demersum HOM05D004131 ORTHO05D004778 4.3e-16 89.4 104 54.8
HanXRQChr02g0059071 Helianthus annuus HOM05D004131 ORTHO05D004778 5.7e-16 89.0 105 52.4
Sabra17G0009400 Salix brachista HOM05D004131 ORTHO05D004778 5.7e-16 89.0 135 45.2
TAR362G1052 Trochodendron aralioides HOM05D004131 ORTHO05D004778 5.7e-16 89.0 111 51.4
Actinidia18408 Actinidia chinensis HOM05D004131 ORTHO05D004778 9.6e-16 88.2 107 52.3
CARHR138980 Cardamine hirsuta HOM05D004131 ORTHO05D004778 9.6e-16 88.2 107 52.3
Cc03_g14990 Coffea canephora HOM05D004131 ORTHO05D004778 9.6e-16 88.2 111 50.5
Aqoxy604s001 Aquilegia oxysepala HOM05D004131 ORTHO05D004778 1.3e-15 87.8 122 47.5
ECA233G3286 Erigeron canadensis HOM05D004131 ORTHO05D004778 1.3e-15 87.8 106 50.9
THA.LOC104804159 Tarenaya hassleriana HOM05D004131 ORTHO05D004778 1.3e-15 87.8 107 52.3
CAN.G448.4 Capsicum annuum HOM05D004131 ORTHO05D004778 1.6e-15 87.4 105 52.4
Thhalv10006256m.g Eutrema salsugineum HOM05D004131 ORTHO05D004778 1.6e-15 87.4 111 49.5
Lsat_1_v5_gn_7_67880 Lactuca sativa HOM05D004131 ORTHO05D004778 1.6e-15 87.4 111 48.6
SalBow6G7192 Salvia bowleyana HOM05D004131 ORTHO05D004778 1.6e-15 87.4 113 51.3
BcaB02g08900 Brassica carinata HOM05D004131 ORTHO05D004778 2.1e-15 87.0 108 51.9
BcaC02g12362 Brassica carinata HOM05D004131 ORTHO05D004778 2.1e-15 87.0 108 51.9
C04p04750 Brassica napus HOM05D004131 ORTHO05D004778 2.1e-15 87.0 108 51.9
BolC4t22105H Brassica oleracea HOM05D004131 ORTHO05D004778 2.1e-15 87.0 108 51.9
Carub.0004s2633 Capsella rubella HOM05D004131 ORTHO05D004778 2.1e-15 87.0 107 51.4
PGSC0003DMG400005367 Solanum tuberosum HOM05D004131 ORTHO05D004778 2.1e-15 87.0 106 51.9
THA.LOC104805841 Tarenaya hassleriana HOM05D004131 ORTHO05D004778 2.1e-15 87.0 107 51.4
Nitab4.5_0000064g0030 Nicotiana tabacum HOM05D004131 ORTHO05D004778 2.8e-15 86.7 106 50.9
Nitab4.5_0005089g0010 Nicotiana tabacum HOM05D004131 ORTHO05D004778 2.8e-15 86.7 106 50.9
Peaxi162Scf00483g00111 Petunia axillaris HOM05D004131 ORTHO05D004778 2.8e-15 86.7 105 52.4
Sp4g25870 Schrenkiella parvula HOM05D004131 ORTHO05D004778 2.8e-15 86.7 107 52.3
CSS0000211 Camellia sinensis var. sinensis HOM05D004131 ORTHO05D004778 3.7e-15 86.3 104 54.8
CSS0046112 Camellia sinensis var. sinensis HOM05D004131 ORTHO05D004778 3.7e-15 86.3 104 54.8
AL5G41850 Arabidopsis lyrata HOM05D004131 ORTHO05D004778 4.8e-15 85.9 111 48.6
Sp5g03340 Schrenkiella parvula HOM05D004131 ORTHO05D004778 4.8e-15 85.9 111 48.6
AT3G59800 Arabidopsis thaliana HOM05D004131 ORTHO05D004778 6.3e-15 85.5 107 50.5
Lalb_Chr05g0218801 Lupinus albus HOM05D004131 ORTHO05D004778 6.3e-15 85.5 107 49.5
BraA04t15927Z Brassica rapa HOM05D004131 ORTHO05D004778 8.2e-15 85.1 117 47.0
Lj6C265T11 Lonicera japonica HOM05D004131 ORTHO05D004778 8.2e-15 85.1 111 48.6
Aa31LG10G14050 Aethionema arabicum HOM05D004131 ORTHO05D004778 1.1e-14 84.7 107 49.5
A04p02020 Brassica napus HOM05D004131 ORTHO05D004778 1.1e-14 84.7 111 47.7
Actinidia28972 Actinidia chinensis HOM05D004131 ORTHO05D004778 1.4e-14 84.3 104 53.8
BcaB02g08209 Brassica carinata HOM05D004131 ORTHO05D004778 1.4e-14 84.3 111 47.7
Eucgr.G01598 Eucalyptus grandis HOM05D004131 ORTHO05D004778 1.4e-14 84.3 101 51.5
Eucgr.L00027 Eucalyptus grandis HOM05D004131 ORTHO05D004778 1.4e-14 84.3 101 51.5
A05p04000 Brassica napus HOM05D004131 ORTHO05D004778 1.8e-14 84.0 106 51.9
BraA05t19388Z Brassica rapa HOM05D004131 ORTHO05D004778 1.8e-14 84.0 106 51.9
Oeu050314.3 Olea europaea HOM05D004131 ORTHO05D004778 1.8e-14 84.0 138 42.8
BcaC02g10087 Brassica carinata HOM05D004131 ORTHO05D004778 2.4e-14 83.6 111 47.7
C04p32910 Brassica napus HOM05D004131 ORTHO05D004778 4.1e-14 82.8 111 46.8
THA.LOC104802336 Tarenaya hassleriana HOM05D004131 ORTHO05D004778 5.3e-14 82.4 106 50.9
BolC4t24854H Brassica oleracea HOM05D004131 ORTHO05D004778 9.0e-14 81.6 107 47.7
QL10p058544 Quercus lobata HOM05D004131 ORTHO05D004778 9.0e-14 81.6 78 60.3
Hund12374 Selenicereus undatus HOM05D004131 ORTHO05D004778 9.0e-14 81.6 104 51.0
arahy.Tifrunner.gnm1.ann1.GY80IK Arachis hypogaea HOM05D004131 ORTHO05D004778 1.2e-13 81.3 133 42.9
SalBow3G2571 Salvia bowleyana HOM05D004131 ORTHO05D004778 1.2e-13 81.3 104 49.0
Zm00001eb425720 Zea mays HOM05D004131 ORTHO05D004778 1.5e-13 80.9 105 52.4
Sc13g0007290 Simmondsia chinensis HOM05D004131 ORTHO05D004778 5.9e-13 79.0 101 50.5
EL10Ac3g06119 Beta vulgaris HOM05D004131 ORTHO05D004778 1.0e-12 78.2 105 50.5
QL10p059329 Quercus lobata HOM05D004131 ORTHO05D004778 1.3e-12 77.8 46 84.8
AUR62002422 Chenopodium quinoa HOM05D004131 ORTHO05D004778 2.2e-12 77.0 113 45.1
AUR62023766 Chenopodium quinoa HOM05D004131 ORTHO05D004778 3.8e-12 76.3 113 45.1
Ah.07g202990 Amaranthus hybridus HOM05D004131 ORTHO05D004778 8.4e-12 75.1 102 49.0
PGR042G3815 Punica granatum HOM05D004131 ORTHO05D004778 2.5e-11 73.6 71 62.0
Thecc.04G162100 Theobroma cacao HOM05D004131 ORTHO05D004778 2.5e-11 73.6 47 83.0
VMungo0251G3663 Vigna mungo HOM05D004131 ORTHO05D004778 2.5e-11 73.6 47 78.7
Lju470A13T20 Lonicera japonica HOM05D004131 ORTHO05D004778 9.3e-11 71.6 47 74.5
Mapoly0055s0100 Marchantia polymorpha HOM05D004131 ORTHO05D004778 1.6e-10 70.9 102 46.1
Lju470A13G17 Lonicera japonica HOM05D004131 ORTHO05D004778 3.5e-10 69.7 46 73.9
Lju470A13T22 Lonicera japonica HOM05D004131 ORTHO05D004778 7.9e-10 68.6 48 70.8
AagrBONN_evm.TU.Sc2ySwM_344.2765 Anthoceros agrestis HOM05D004131 ORTHO05D004778 2.3e-09 67.0 115 38.3
Lj6C255T9 Lonicera japonica HOM05D004131 ORTHO05D004778 8.7e-09 65.1 104 43.3
CARHR170140 Cardamine hirsuta HOM05D004131 ORTHO05D004778 4.3e-08 62.8 65 58.5
vmacro15701 Vaccinium macrocarpon HOM05D004131 ORTHO05D004778 4.3e-08 62.8 44 75.0
BcaB02g07200 Brassica carinata HOM05D004131 ORTHO05D004778 9.7e-08 61.6 44 70.5
Pp3c3_18840 Physcomitrium patens HOM05D004131 ORTHO05D004778 9.7e-08 61.6 106 39.6
BcaB02g08224 Brassica carinata HOM05D004131 ORTHO05D004778 1.3e-07 61.2 43 72.1
Rhsim02G0086100 Rhododendron simsii HOM05D004131 ORTHO05D004778 1.6e-07 60.8 40 77.5
RhsimUnG0015600 Rhododendron simsii HOM05D004131 ORTHO05D004778 1.6e-07 60.8 40 77.5
Carub.0005s2652 Capsella rubella HOM05D004131 ORTHO05D004778 2.8e-07 60.1 40 75.0
BcaC07g40452 Brassica carinata HOM05D004131 ORTHO05D004778 3.7e-07 59.7 43 69.8
AL4G42670 Arabidopsis lyrata HOM05D004131 ORTHO05D004778 8.2e-07 58.5 69 53.6
SMO364G0381 Selaginella moellendorffii HOM05D004131 ORTHO05D004778 1.1e-06 58.2 101 38.6
AT2G43795 Arabidopsis thaliana HOM05D004131 ORTHO05D004778 1.4e-06 57.8 62 58.1
BcaB02g07199 Brassica carinata HOM05D004131 ORTHO05D004778 3.1e-06 56.6 39 74.4
BcaNung06582 Brassica carinata HOM05D004131 ORTHO05D004778 5.3e-06 55.8 35 77.1


User provided reference genes

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