Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG08G000010 Citrullus lanatus HOM05D005167 ORTHO05D006312 1.6e-183 646.0 320 100.0
ClCG04G000020 Citrullus lanatus HOM05D005167 ORTHO05D006312 9.4e-181 636.7 320 99.1
MELO3C034515.2 Cucumis melo HOM05D005167 ORTHO05D006312 2.8e-132 475.7 379 68.6
Sed0010261 Sechium edule HOM05D005167 ORTHO05D006312 3.9e-126 455.3 348 67.8
Cpa.g.sc15.42 Carica papaya HOM05D005167 ORTHO05D006312 3.8e-89 332.4 334 52.7
CANSAT64G2797 Cannabis sativa HOM05D005167 ORTHO05D006312 3.1e-83 312.8 347 48.1
Thecc.07G187300 Theobroma cacao HOM05D005167 ORTHO05D006312 5.3e-83 312.0 363 44.9
Actinidia12290 Actinidia chinensis HOM05D005167 ORTHO05D006312 3.8e-81 305.8 377 48.0
FAN19G3173 Fragaria x ananassa HOM05D005167 ORTHO05D006312 6.7e-78 295.0 356 46.9
FAN26G1264 Fragaria x ananassa HOM05D005167 ORTHO05D006312 6.7e-78 295.0 353 47.3
Gohir.D09G002700 Gossypium hirsutum HOM05D005167 ORTHO05D006312 2.0e-77 293.5 328 48.2
SpUn0422_0010 Schrenkiella parvula HOM05D005167 ORTHO05D006312 7.4e-77 291.6 331 45.6
Duzib116G0260 Durio zibethinus HOM05D005167 ORTHO05D006312 3.1e-75 286.2 352 45.2
C07p02160 Brassica napus HOM05D005167 ORTHO05D006312 5.3e-75 285.4 328 46.0
Atru.chr9.69 Acer truncatum HOM05D005167 ORTHO05D006312 7.0e-75 285.0 327 49.5
A03p66890 Brassica napus HOM05D005167 ORTHO05D006312 9.1e-75 284.6 328 45.7
BolC7t40625H Brassica oleracea HOM05D005167 ORTHO05D006312 9.1e-75 284.6 328 46.0
BraA01t02792Z Brassica rapa HOM05D005167 ORTHO05D006312 9.1e-75 284.6 328 45.7
Dinv01746 Davidia involucrata HOM05D005167 ORTHO05D006312 2.0e-74 283.5 417 38.8
Carub.0003s3540 Capsella rubella HOM05D005167 ORTHO05D006312 5.9e-74 282.0 325 43.4
Thhalv10028036m.g Eutrema salsugineum HOM05D005167 ORTHO05D006312 1.7e-73 280.4 331 44.7
CARHR046110 Cardamine hirsuta HOM05D005167 ORTHO05D006312 1.9e-72 276.9 327 45.0
CiPaw.15G107300 Carya illinoinensis HOM05D005167 ORTHO05D006312 5.5e-72 275.4 377 43.0
Lju225A7G63 Lonicera japonica HOM05D005167 ORTHO05D006312 1.2e-71 274.2 333 46.2
BcaB03g16877 Brassica carinata HOM05D005167 ORTHO05D006312 4.7e-71 272.3 334 44.3
Nn3g20631 Nelumbo nucifera HOM05D005167 ORTHO05D006312 2.3e-70 270.0 338 44.4
RcHm_v2.0_Chr3g0496761 Rosa chinensis HOM05D005167 ORTHO05D006312 3.0e-70 269.6 396 42.2
MD00G1096100 Malus domestica HOM05D005167 ORTHO05D006312 1.5e-69 267.3 360 43.9
Migut.N00879 Erythranthe guttata HOM05D005167 ORTHO05D006312 2.2e-68 263.5 378 41.5
Lsat_1_v5_gn_8_167100 Lactuca sativa HOM05D005167 ORTHO05D006312 1.6e-66 257.3 339 43.1
Oeu000168.1 Olea europaea HOM05D005167 ORTHO05D006312 3.5e-66 256.1 371 42.0
Aqoxy4G01544 Aquilegia oxysepala HOM05D005167 ORTHO05D006312 6.5e-65 251.9 355 41.7
HanXRQChr15g0488451 Helianthus annuus HOM05D005167 ORTHO05D006312 8.5e-65 251.5 375 40.0
PSO170G3824 Papaver somniferum HOM05D005167 ORTHO05D006312 2.1e-63 246.9 403 37.7
Ciclev10030405m.g Citrus clementina HOM05D005167 ORTHO05D006312 3.6e-63 246.1 281 46.6
SGA_v2.0_scaffold150G36624 Striga asiatica HOM05D005167 ORTHO05D006312 3.6e-63 246.1 323 41.5
CiPaw.15G107200 Carya illinoinensis HOM05D005167 ORTHO05D006312 1.8e-62 243.8 312 44.2
HanXRQChr12g0386151 Helianthus annuus HOM05D005167 ORTHO05D006312 1.8e-62 243.8 327 43.1
HPP92_025056 Vanilla planifolia HOM05D005167 ORTHO05D006312 2.3e-62 243.4 397 36.0
Nn5g27095 Nelumbo nucifera HOM05D005167 ORTHO05D006312 3.0e-62 243.0 447 35.6
SGA_v2.0_scaffold401G50971 Striga asiatica HOM05D005167 ORTHO05D006312 3.1e-59 233.0 423 36.4
Glyma.13G026000 Glycine max HOM05D005167 ORTHO05D006312 4.1e-59 232.6 289 45.7
Ah.02g128610 Amaranthus hybridus HOM05D005167 ORTHO05D006312 1.6e-58 230.7 433 35.1
ECA248G1565 Erigeron canadensis HOM05D005167 ORTHO05D006312 4.5e-58 229.2 409 37.9
Hma1.2p1_0052F.1_g030120 Hydrangea macrophylla HOM05D005167 ORTHO05D006312 5.9e-58 228.8 455 34.9
Lj9C241G5 Lonicera japonica HOM05D005167 ORTHO05D006312 7.7e-58 228.4 447 35.1
Phvul.006G133500 Phaseolus vulgaris HOM05D005167 ORTHO05D006312 7.7e-58 228.4 414 35.5
SalBow3G4053 Salvia bowleyana HOM05D005167 ORTHO05D006312 7.7e-58 228.4 439 33.9
Glyma.09G018700 Glycine max HOM05D005167 ORTHO05D006312 1.0e-57 228.0 421 35.9
Gohir.D05G124100 Gossypium hirsutum HOM05D005167 ORTHO05D006312 2.3e-57 226.9 386 37.6
Thecc.06G025200 Theobroma cacao HOM05D005167 ORTHO05D006312 2.9e-57 226.5 392 37.5
Gorai.009G128100 Gossypium raimondii HOM05D005167 ORTHO05D006312 1.1e-56 224.6 393 37.4
Sopen01g045080 Solanum pennellii HOM05D005167 ORTHO05D006312 1.1e-56 224.6 440 35.7
Solyc01g102670.3 Solanum lycopersicum HOM05D005167 ORTHO05D006312 1.9e-56 223.8 440 35.5
PGSC0003DMG400018222 Solanum tuberosum HOM05D005167 ORTHO05D006312 4.2e-56 222.6 444 35.4
ATR0782G113 Amborella trichopoda HOM05D005167 ORTHO05D006312 5.5e-56 222.2 435 34.3
Gorai.006G003300 Gossypium raimondii HOM05D005167 ORTHO05D006312 5.5e-56 222.2 250 46.4
Phvul.L001673 Phaseolus vulgaris HOM05D005167 ORTHO05D006312 7.2e-56 221.9 256 47.3
VMungo0540G0564 Vigna mungo HOM05D005167 ORTHO05D006312 7.2e-56 221.9 420 35.0
Cc00_g01280 Coffea canephora HOM05D005167 ORTHO05D006312 9.5e-56 221.5 255 47.5
Os07g0657600 Oryza sativa ssp. japonica HOM05D005167 ORTHO05D006312 9.5e-56 221.5 418 35.6
arahy.Tifrunner.gnm1.ann1.JG47X3 Arachis hypogaea HOM05D005167 ORTHO05D006312 4.7e-55 219.2 427 34.7
Nitab4.5_0004176g0010 Nicotiana tabacum HOM05D005167 ORTHO05D006312 4.7e-55 219.2 448 35.5
Atru.chr6.56 Acer truncatum HOM05D005167 ORTHO05D006312 1.8e-54 217.2 437 34.6
arahy.Tifrunner.gnm1.ann1.T4BBUF Arachis hypogaea HOM05D005167 ORTHO05D006312 1.8e-54 217.2 427 34.4
Ciclev10001110m.g Citrus clementina HOM05D005167 ORTHO05D006312 2.3e-54 216.9 436 34.9
GSVIVG01029417001 Vitis vinifera HOM05D005167 ORTHO05D006312 2.3e-54 216.9 258 45.3
Sc07g0003350 Simmondsia chinensis HOM05D005167 ORTHO05D006312 5.2e-54 215.7 397 34.8
Sc07g0003360 Simmondsia chinensis HOM05D005167 ORTHO05D006312 5.2e-54 215.7 397 34.8
QL02p104239 Quercus lobata HOM05D005167 ORTHO05D006312 6.8e-54 215.3 431 35.0
Hund15261 Selenicereus undatus HOM05D005167 ORTHO05D006312 6.8e-54 215.3 429 34.3
Manes.18G143000 Manihot esculenta HOM05D005167 ORTHO05D006312 1.5e-53 214.2 348 39.1
TWI31G1352 Tripterygium wilfordii HOM05D005167 ORTHO05D006312 1.5e-53 214.2 257 44.7
Lj6g0014124 Lotus japonicus HOM05D005167 ORTHO05D006312 2.6e-53 213.4 430 33.3
Nitab4.5_0001085g0040 Nicotiana tabacum HOM05D005167 ORTHO05D006312 2.6e-53 213.4 456 34.6
PGSC0003DMG400014526 Solanum tuberosum HOM05D005167 ORTHO05D006312 3.4e-53 213.0 302 42.4
Dinv24548 Davidia involucrata HOM05D000457 ORTHO05D000560 7.5e-53 211.8 489 32.1
Prupe.4G287800 Prunus persica HOM05D005167 ORTHO05D006312 1.3e-52 211.1 273 45.1
CAN.G1379.23 Capsicum annuum HOM05D005167 ORTHO05D006312 2.8e-52 209.9 452 33.6
Gohir.A05G123200 Gossypium hirsutum HOM05D005167 ORTHO05D006312 2.8e-52 209.9 367 37.6
TAR629G0123 Trochodendron aralioides HOM05D005167 ORTHO05D006312 3.7e-52 209.5 307 41.0
Peaxi162Scf00194g00934 Petunia axillaris HOM05D005167 ORTHO05D006312 6.3e-52 208.8 444 34.0
EL10Ac6g13938 Beta vulgaris HOM05D005167 ORTHO05D006312 1.1e-51 208.0 436 32.1
PGR042G3689 Punica granatum HOM05D005167 ORTHO05D006312 1.4e-51 207.6 454 33.3
DCAR_029460 Daucus carota HOM05D005167 ORTHO05D006312 2.4e-51 206.8 448 32.6
Sopen02g001190 Solanum pennellii HOM05D005167 ORTHO05D006312 2.4e-51 206.8 258 44.6
TWI15G0790 Tripterygium wilfordii HOM05D005167 ORTHO05D006312 2.4e-51 206.8 271 44.6
Lju225C0G3 Lonicera japonica HOM05D005167 ORTHO05D006312 5.4e-51 205.7 324 41.0
Duzib160G0520 Durio zibethinus HOM05D005167 ORTHO05D006312 1.6e-50 204.1 377 37.9
Cc02_g36800 Coffea canephora HOM05D005167 ORTHO05D006312 5.9e-50 202.2 411 35.8
CAN.G989.3 Capsicum annuum HOM05D005167 ORTHO05D006312 1.0e-49 201.4 261 44.1
Rhsim05G0120900 Rhododendron simsii HOM05D005167 ORTHO05D006312 8.6e-49 198.4 457 32.2
Manes.18G143300 Manihot esculenta HOM05D005167 ORTHO05D006312 2.5e-48 196.8 296 41.6
Haze_09951 Corylus avellana HOM05D005167 ORTHO05D006312 1.2e-47 194.5 462 31.8
Gohir.A09G002900 Gossypium hirsutum HOM05D005167 ORTHO05D006312 1.6e-47 194.1 223 45.7
Nitab4.5_0005690g0020 Nicotiana tabacum HOM05D005167 ORTHO05D006312 1.0e-46 191.4 256 43.8
Potri.003G046300 Populus trichocarpa HOM05D005167 ORTHO05D006312 1.8e-46 190.7 417 34.1
BcaC08g44461 Brassica carinata HOM05D005167 ORTHO05D006312 2.3e-46 190.3 273 40.3
vmacro19812 Vaccinium macrocarpon HOM05D005167 ORTHO05D006312 3.0e-46 189.9 455 31.9
TWI23G0323 Tripterygium wilfordii HOM05D005167 ORTHO05D006312 5.2e-46 189.1 462 31.2
CiPaw.09G096800 Carya illinoinensis HOM05D005167 ORTHO05D006312 9.8e-45 184.9 433 32.6
Manes.06G015900 Manihot esculenta HOM05D005167 ORTHO05D006312 2.9e-44 183.3 423 31.9
CANSAT01G2096 Cannabis sativa HOM05D005167 ORTHO05D006312 1.1e-43 181.4 443 31.8
FvH4_1g27954 Fragaria vesca HOM05D005167 ORTHO05D006312 8.6e-41 171.8 200 46.5
Nitab4.5_0001246g0010 Nicotiana tabacum HOM05D005167 ORTHO05D006312 3.3e-40 169.9 244 42.2
Gohir.D07G228750 Gossypium hirsutum HOM05D005167 ORTHO05D006312 4.3e-40 169.5 311 35.7
Nitab4.5_0007926g0020 Nicotiana tabacum HOM05D005167 ORTHO05D006312 5.6e-40 169.1 244 42.6
Gorai.001G263800 Gossypium raimondii HOM05D005167 ORTHO05D006312 7.3e-40 168.7 282 38.3
ECA234G3362 Erigeron canadensis HOM05D005167 ORTHO05D006312 1.2e-39 167.9 285 40.0
C06p19120 Brassica napus HOM05D005167 ORTHO05D006312 3.6e-39 166.4 214 46.3
BolC6t37111H Brassica oleracea HOM05D005167 ORTHO05D006312 3.6e-39 166.4 214 46.3
Eucgr.B01586 Eucalyptus grandis HOM05D005167 ORTHO05D006312 3.1e-38 163.3 286 36.7
A07p01000 Brassica napus HOM05D005167 ORTHO05D006312 6.8e-38 162.2 302 34.8
Sabra03G0019800 Salix brachista HOM05D005167 ORTHO05D006312 8.9e-38 161.8 466 29.8
BcaC06g36613 Brassica carinata HOM05D005167 ORTHO05D006312 4.4e-37 159.5 189 42.3
THA.LOC104809040 Tarenaya hassleriana HOM05D005167 ORTHO05D006312 4.9e-36 156.0 466 29.0
QL93p1868_0064 Quercus lobata HOM05D005167 ORTHO05D006312 8.3e-36 155.2 138 60.9
QL01p052835 Quercus lobata HOM05D005167 ORTHO05D006312 2.4e-35 153.7 138 60.1
AUR62024866 Chenopodium quinoa HOM05D005167 ORTHO05D006312 4.6e-34 149.4 367 31.3
QL93p1868_0059 Quercus lobata HOM05D005167 ORTHO05D006312 6.6e-33 145.6 160 46.2
BcaC06g31947 Brassica carinata HOM05D005167 ORTHO05D006312 2.8e-31 140.2 179 39.7
Thhalv10028065m.g Eutrema salsugineum HOM05D005167 ORTHO05D006312 3.6e-31 139.8 140 52.1
Eucgr.G00036 Eucalyptus grandis HOM05D005167 ORTHO05D006312 6.8e-30 135.6 381 28.1
CDE02G1408 Ceratophyllum demersum HOM05D005167 ORTHO05D006312 6.4e-28 129.0 125 52.8
MBI17_g35115_MAGBIO Magnolia biondii HOM05D005167 ORTHO05D006312 5.4e-27 125.9 162 40.7
QL01p053234 Quercus lobata HOM05D005167 ORTHO05D006312 5.4e-27 125.9 160 43.1
Oeu000169.3 Olea europaea HOM05D005167 ORTHO05D006312 7.1e-27 125.6 149 45.0
HanXRQChr12g0378911 Helianthus annuus HOM05D005167 ORTHO05D006312 7.8e-26 122.1 140 45.7
Atru.chr6.45 Acer truncatum HOM05D005167 ORTHO05D006312 1.1e-24 118.2 390 28.5
MBI17_g35871_MAGBIO Magnolia biondii HOM05D005167 ORTHO05D006312 8.1e-23 112.1 96 51.0
BcaC06g31946 Brassica carinata HOM05D005167 ORTHO05D006312 1.4e-22 111.3 226 31.4
CDE02G4394 Ceratophyllum demersum HOM05D003845 ORTHO05D004161 3.1e-22 110.2 133 41.4
Aqoxy4G01501 Aquilegia oxysepala HOM05D005167 ORTHO05D006312 1.2e-18 98.2 195 34.4
QL93p0255_0001 Quercus lobata HOM05D005167 ORTHO05D006312 2.1e-18 97.4 312 28.2
SpUn0005_0090 Schrenkiella parvula HOM05D005167 ORTHO05D006312 2.1e-18 97.4 138 34.8
Atru.chr9.63 Acer truncatum HOM05D005167 ORTHO05D006312 1.6e-15 87.8 144 35.4
Actinidia01647 Actinidia chinensis HOM05D005167 ORTHO05D006312 1.6e-15 87.8 120 39.2
PGSC0003DMG400040448 Solanum tuberosum HOM05D005167 ORTHO05D006312 6.2e-15 85.9 110 44.5
COL.COLO4_11943 Corchorus olitorius HOM05D005167 ORTHO05D006312 2.9e-12 77.0 121 38.0
Eucgr.B01611 Eucalyptus grandis HOM05D005167 ORTHO05D006312 2.4e-11 73.9 140 30.7
Gohir.A12G103850 Gossypium hirsutum HOM05D005167 ORTHO05D006312 7.8e-10 68.9 117 38.5


User provided reference genes

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