Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG07G017400 Citrullus lanatus HOM05D005154 ORTHO05D006270 7.3e-159 563.9 300 100.0
MELO3C017601.2 Cucumis melo HOM05D005154 ORTHO05D006270 5.8e-124 448.0 304 80.9
Sed0002157 Sechium edule HOM05D005154 ORTHO05D006270 1.4e-98 363.6 303 69.6
CsaV3_UNG158170 Cucumis sativus L. HOM05D001364 ORTHO05D006270 1.5e-58 230.7 203 70.0
Cfa002623 Carpinus fangiana HOM05D005154 ORTHO05D006270 2.0e-55 220.3 306 49.3
Haze_24881 Corylus avellana HOM05D005154 ORTHO05D006270 6.4e-54 215.3 307 47.9
Haze_24872 Corylus avellana HOM05D005154 ORTHO05D006270 8.3e-54 214.9 307 47.9
Dinv13215 Davidia involucrata HOM05D005154 ORTHO05D006270 5.4e-53 212.2 310 48.7
COL.COLO4_27276 Corchorus olitorius HOM05D005154 ORTHO05D006270 2.7e-52 209.9 309 47.2
CiPaw.03G144000 Carya illinoinensis HOM05D005154 ORTHO05D006270 1.0e-51 208.0 315 48.9
Manes.12G131800 Manihot esculenta HOM05D005154 ORTHO05D006270 9.5e-50 201.4 308 46.8
MD00G1037300 Malus domestica HOM05D005154 ORTHO05D006270 2.1e-49 200.3 283 48.4
Sabra07G0078700 Salix brachista HOM05D005154 ORTHO05D006270 2.1e-49 200.3 293 46.4
QL06p048470 Quercus lobata HOM05D005154 ORTHO05D006270 1.0e-48 198.0 300 49.3
Glyma.05G176600 Glycine max HOM05D005154 ORTHO05D006270 2.3e-48 196.8 289 50.2
Thecc.01G097800 Theobroma cacao HOM05D005154 ORTHO05D006270 2.3e-48 196.8 309 48.9
CSS0008069 Camellia sinensis var. sinensis HOM05D005154 ORTHO05D006270 3.1e-48 196.4 302 47.0
TWI77G0548 Tripterygium wilfordii HOM05D005154 ORTHO05D006270 3.1e-48 196.4 290 46.9
RcHm_v2.0_Chr2g0112751 Rosa chinensis HOM05D005154 ORTHO05D006270 4.0e-48 196.1 289 47.1
Duzib147G1408 Durio zibethinus HOM05D005154 ORTHO05D006270 2.6e-47 193.4 286 49.0
Duzib187G0267 Durio zibethinus HOM05D005154 ORTHO05D006270 7.5e-47 191.8 280 48.2
TWI53G2081 Tripterygium wilfordii HOM05D005154 ORTHO05D006270 7.5e-47 191.8 301 44.2
FAN28G0994 Fragaria x ananassa HOM05D005154 ORTHO05D006270 1.3e-46 191.0 230 52.6
Potri.007G095600 Populus trichocarpa HOM05D005154 ORTHO05D006270 2.9e-46 189.9 289 46.4
FvH4_1g20490 Fragaria vesca HOM05D005154 ORTHO05D006270 8.3e-46 188.3 221 53.8
FAN23G2516 Fragaria x ananassa HOM05D005154 ORTHO05D006270 8.3e-46 188.3 221 53.8
Rhsim08G0012700 Rhododendron simsii HOM05D005154 ORTHO05D006270 8.3e-46 188.3 243 50.2
Eucgr.I00513 Eucalyptus grandis HOM05D005154 ORTHO05D006270 2.4e-45 186.8 308 44.5
Actinidia28853 Actinidia chinensis HOM05D005154 ORTHO05D006270 5.4e-45 185.7 309 44.3
Potri.005G073500 Populus trichocarpa HOM05D005154 ORTHO05D006270 7.0e-45 185.3 290 44.5
Sabra05G0060000 Salix brachista HOM05D005154 ORTHO05D006270 1.2e-44 184.5 299 43.8
Atru.chr3.1372 Acer truncatum HOM05D005154 ORTHO05D006270 1.6e-44 184.1 251 49.4
Lalb_Chr07g0185271 Lupinus albus HOM05D005154 ORTHO05D006270 3.5e-44 183.0 274 47.1
TAR633G1456 Trochodendron aralioides HOM05D005154 ORTHO05D006270 4.6e-44 182.6 279 45.9
VMungo0251G0355 Vigna mungo HOM05D005154 ORTHO05D006270 4.6e-44 182.6 215 54.9
Ciclev10026087m.g Citrus clementina HOM05D005154 ORTHO05D006270 7.8e-44 181.8 312 43.3
Lj4g0010322 Lotus japonicus HOM05D005154 ORTHO05D006270 7.8e-44 181.8 270 49.6
Nn5g28615 Nelumbo nucifera HOM05D005154 ORTHO05D006270 7.8e-44 181.8 213 54.5
PGR004G1180 Punica granatum HOM05D005154 ORTHO05D006270 7.8e-44 181.8 283 45.6
FAN19G2087 Fragaria x ananassa HOM05D005154 ORTHO05D006270 1.0e-43 181.4 228 52.2
MELO3C007745.2 Cucumis melo HOM05D005154 ORTHO05D006270 1.3e-43 181.0 313 42.5
Gohir.A02G128100 Gossypium hirsutum HOM05D005154 ORTHO05D006270 1.3e-43 181.0 295 45.4
Gorai.003G040700 Gossypium raimondii HOM05D005154 ORTHO05D006270 1.3e-43 181.0 306 45.1
Prupe.6G191100 Prunus persica HOM05D005154 ORTHO05D006270 1.7e-43 180.6 254 49.6
vmacro18586 Vaccinium macrocarpon HOM05D005154 ORTHO05D006270 1.1e-42 177.9 300 44.3
CsaV3_4G004630 Cucumis sativus L. HOM05D005154 ORTHO05D006270 2.5e-42 176.8 118 86.4
Lsat_1_v5_gn_2_66460 Lactuca sativa HOM05D005154 ORTHO05D006270 3.3e-42 176.4 294 43.5
Nitab4.5_0004570g0010 Nicotiana tabacum HOM05D005154 ORTHO05D006270 4.3e-42 176.0 220 52.7
PSO210G3532 Papaver somniferum HOM05D005154 ORTHO05D006270 4.3e-42 176.0 240 47.9
Phvul.002G257700 Phaseolus vulgaris HOM05D005154 ORTHO05D006270 4.3e-42 176.0 258 48.4
THA.LOC104798878 Tarenaya hassleriana HOM05D005154 ORTHO05D006270 7.3e-42 175.3 274 46.7
CsaV3_6G045320 Cucumis sativus L. HOM05D005154 ORTHO05D006270 1.2e-41 174.5 307 42.3
arahy.Tifrunner.gnm1.ann1.0B7H6P Arachis hypogaea HOM05D005154 ORTHO05D006270 2.1e-41 173.7 288 43.8
PSO447G0271 Papaver somniferum HOM05D005154 ORTHO05D006270 2.1e-41 173.7 240 47.5
arahy.Tifrunner.gnm1.ann1.LGH16T Arachis hypogaea HOM05D005154 ORTHO05D006270 2.8e-41 173.3 288 43.8
TAR362G0353 Trochodendron aralioides HOM05D005154 ORTHO05D006270 2.8e-41 173.3 303 43.6
Actinidia20002 Actinidia chinensis HOM05D005154 ORTHO05D006270 3.6e-41 172.9 258 47.3
PGSC0003DMG400016159 Solanum tuberosum HOM05D005154 ORTHO05D006270 3.6e-41 172.9 290 44.1
MSTRG.3768 Avicennia marina HOM05D005154 ORTHO05D006270 1.4e-40 171.0 316 42.1
HanXRQChr14g0445521 Helianthus annuus HOM05D005154 ORTHO05D006270 1.4e-40 171.0 266 43.6
Nn1g06223 Nelumbo nucifera HOM05D005154 ORTHO05D006270 5.2e-40 169.1 235 48.5
SalBow5G0552 Salvia bowleyana HOM05D005154 ORTHO05D006270 8.9e-40 168.3 277 45.8
Hma1.2p1_0019F.1_g013610 Hydrangea macrophylla HOM05D005154 ORTHO05D006270 1.5e-39 167.5 303 42.2
Sed0021389 Sechium edule HOM05D005154 ORTHO05D006270 1.5e-39 167.5 189 56.1
Cpa.g.sc55.88 Carica papaya HOM05D005154 ORTHO05D006270 2.0e-39 167.2 155 64.5
Cc07_g14830 Coffea canephora HOM05D005154 ORTHO05D006270 2.0e-39 167.2 219 49.3
Peaxi162Scf00381g00914 Petunia axillaris HOM05D005154 ORTHO05D006270 2.0e-39 167.2 214 50.9
SGA_v2.0_scaffold111G31501 Striga asiatica HOM05D005154 ORTHO05D006270 2.0e-39 167.2 224 51.8
Solyc11g009070.2 Solanum lycopersicum HOM05D005154 ORTHO05D006270 3.4e-39 166.4 311 42.4
Aa31LG1G16710 Aethionema arabicum HOM05D005154 ORTHO05D006270 4.4e-39 166.0 224 50.4
Gohir.D03G039500 Gossypium hirsutum HOM05D005154 ORTHO05D006270 7.5e-39 165.2 169 58.0
Thhalv10004756m.g Eutrema salsugineum HOM05D005154 ORTHO05D006270 9.8e-39 164.9 249 46.2
AUR62001985 Chenopodium quinoa HOM05D005154 ORTHO05D006270 1.7e-38 164.1 242 48.3
Migut.H02344 Erythranthe guttata HOM05D005154 ORTHO05D006270 1.7e-38 164.1 283 43.8
MBI02_g02178_MAGBIO Magnolia biondii HOM05D005154 ORTHO05D006270 2.2e-38 163.7 212 50.9
Sopen11g004840 Solanum pennellii HOM05D005154 ORTHO05D006270 4.9e-38 162.5 293 43.0
AL8G42810 Arabidopsis lyrata HOM05D005154 ORTHO05D006270 6.4e-38 162.2 299 44.1
THA.LOC104807680 Tarenaya hassleriana HOM05D005154 ORTHO05D006270 6.4e-38 162.2 233 46.4
TPR.G6195 Trifolium pratense HOM05D005154 ORTHO05D006270 6.4e-38 162.2 276 47.5
CAN.G905.36 Capsicum annuum HOM05D005154 ORTHO05D006270 8.3e-38 161.8 319 42.6
CARHR279200 Cardamine hirsuta HOM05D005154 ORTHO05D006270 8.3e-38 161.8 244 47.5
Migut.L00147 Erythranthe guttata HOM05D005154 ORTHO05D006270 8.3e-38 161.8 224 49.1
Medtr8g089995 Medicago truncatula HOM05D005154 ORTHO05D006270 8.3e-38 161.8 268 46.3
MSTRG.2575 Avicennia marina HOM05D005154 ORTHO05D006270 1.1e-37 161.4 216 52.3
BraA02t09304Z Brassica rapa HOM05D005154 ORTHO05D006270 1.4e-37 161.0 220 46.8
A06p32100 Brassica napus HOM05D005154 ORTHO05D006270 1.9e-37 160.6 308 41.2
BraA06t26139Z Brassica rapa HOM05D005154 ORTHO05D006270 1.9e-37 160.6 308 41.2
Carub.0008s2612 Capsella rubella HOM05D005154 ORTHO05D006270 1.9e-37 160.6 298 43.6
Glyma.08G134000 Glycine max HOM05D005154 ORTHO05D006270 1.9e-37 160.6 223 52.5
A02p43800 Brassica napus HOM05D005154 ORTHO05D006270 2.4e-37 160.2 268 42.2
Sp2g28350 Schrenkiella parvula HOM05D005154 ORTHO05D006270 2.4e-37 160.2 237 47.7
Ca_17754_v3 Cicer arietinum L. HOM05D005154 ORTHO05D006270 4.1e-37 159.5 237 49.4
Hund13599 Selenicereus undatus HOM05D005154 ORTHO05D006270 4.1e-37 159.5 246 45.5
CDE05G0874 Ceratophyllum demersum HOM05D005154 ORTHO05D006270 1.6e-36 157.5 302 42.1
EL10Ac6g15137 Beta vulgaris HOM05D005154 ORTHO05D006270 2.1e-36 157.1 288 43.4
BolC2t12462H Brassica oleracea HOM05D005154 ORTHO05D006270 4.6e-36 156.0 275 42.2
C03p60830 Brassica napus HOM05D005154 ORTHO05D006270 6.0e-36 155.6 268 44.0
ECA238G2162 Erigeron canadensis HOM05D005154 ORTHO05D001925 6.0e-36 155.6 157 58.6
SalBow3G4482 Salvia bowleyana HOM05D005154 ORTHO05D006270 1.0e-35 154.8 280 42.9
Ca_16517_v3 Cicer arietinum L. HOM05D005154 ORTHO05D006270 1.3e-35 154.5 266 43.6
SalBow3G3886 Salvia bowleyana HOM05D005154 ORTHO05D006270 1.3e-35 154.5 280 42.9
ATR1133G017 Amborella trichopoda HOM05D005154 ORTHO05D006270 1.7e-35 154.1 166 56.0
BolC3t18339H Brassica oleracea HOM05D002046 ORTHO05D002180 1.7e-35 154.1 305 40.3
CsaV3_UNG129000 Cucumis sativus L. HOM05D005154 ORTHO05D006270 2.3e-35 153.7 101 89.1
BcaC01g02761 Brassica carinata HOM05D005154 ORTHO05D006270 3.9e-35 152.9 305 40.0
Sc03g0000070 Simmondsia chinensis HOM05D005154 ORTHO05D006270 4.3e-34 149.4 281 40.2
Aqoxy6G00745 Aquilegia oxysepala HOM05D005154 ORTHO05D006270 1.8e-32 144.1 311 37.6
C02p63960 Brassica napus HOM05D005154 ORTHO05D006270 2.3e-32 143.7 266 41.7
ClCG01G018660 Citrullus lanatus HOM05D005154 ORTHO05D006270 4.0e-32 142.9 372 34.1
HPP92_016780 Vanilla planifolia HOM05D005154 ORTHO05D006270 5.2e-32 142.5 182 54.4
Oeu001799.2 Olea europaea HOM05D005154 ORTHO05D006270 1.5e-31 141.0 354 35.3
Os08g0484800 Oryza sativa ssp. japonica HOM05D005154 ORTHO05D006270 2.6e-31 140.2 176 51.7
CsaV3_UNG223540 Cucumis sativus L. HOM05D005154 ORTHO05D006270 4.4e-31 139.4 116 77.6
Medtr3g086990 Medicago truncatula HOM05D005154 ORTHO05D006270 4.4e-31 139.4 285 41.4
SGA_v2.0_scaffold335G49113 Striga asiatica HOM05D005154 ORTHO05D006270 5.8e-31 139.0 217 45.6
Oeu032406.1 Olea europaea HOM05D005154 ORTHO05D006270 9.9e-31 138.3 255 42.7
AUR62003820 Chenopodium quinoa HOM05D005154 ORTHO05D006270 1.3e-30 137.9 112 68.8
Sed0027637 Sechium edule HOM05D005154 ORTHO05D006270 2.2e-30 137.1 220 43.2
unitig_899.g14551 Utricularia gibba HOM05D005154 ORTHO05D006270 2.9e-30 136.7 189 50.8
AT5G65250 Arabidopsis thaliana HOM05D005154 ORTHO05D006270 3.8e-30 136.3 300 40.3
GSVIVG01006633001 Vitis vinifera HOM05D005154 ORTHO05D006270 4.9e-30 136.0 127 62.2
CiPaw.04G102700 Carya illinoinensis HOM05D005154 ORTHO05D006270 1.1e-29 134.8 222 45.5
DCAR_014210 Daucus carota HOM05D005154 ORTHO05D006270 2.4e-29 133.7 137 59.9
BcaB07g34227 Brassica carinata HOM05D005154 ORTHO05D006270 7.8e-28 128.6 110 65.5
PGR102G1872 Punica granatum HOM05D005154 ORTHO05D006270 7.8e-28 128.6 114 64.0
Lj4A897G79 Lonicera japonica HOM05D005154 ORTHO05D006270 1.0e-27 128.3 130 59.2
Psat5g090640 Pisum sativum HOM05D005154 ORTHO05D006270 1.3e-27 127.9 211 43.6
MBI02_g27971_MAGBIO Magnolia biondii HOM05D005154 ORTHO05D006270 6.6e-27 125.6 279 39.1
SEGI_40329 Sequoiadendron giganteum HOM05D005154 ORTHO05D006270 3.6e-25 119.8 174 46.0
Psat7g056800 Pisum sativum HOM05D005154 ORTHO05D006270 4.7e-25 119.4 145 52.4
MD01G1033600 Malus domestica HOM05D005154 ORTHO05D006270 3.1e-24 116.7 146 50.0
unitig_748.g8652 Utricularia gibba HOM05D005154 ORTHO05D006270 1.5e-23 114.4 188 44.1
BcaNung07054 Brassica carinata HOM05D005154 ORTHO05D006270 5.8e-23 112.5 88 70.5
CDE03G0147 Ceratophyllum demersum HOM05D005154 ORTHO05D006270 8.7e-19 98.6 103 56.3
Lj2C542T5 Lonicera japonica HOM05D005154 ORTHO05D006270 1.5e-18 97.8 223 38.1
Mapoly0112s0020 Marchantia polymorpha HOM05D005154 ORTHO05D006270 3.3e-18 96.7 170 44.1
CDE05G3641 Ceratophyllum demersum HOM05D005154 ORTHO05D006270 9.6e-18 95.1 225 36.4
Pp3c10_24690 Physcomitrium patens HOM05D005154 ORTHO05D006270 5.3e-16 89.4 132 45.5
CBR_g50776 Chara braunii HOM05D002289 ORTHO05D004369 1.9e-13 80.9 118 41.5
Nitab4.5_0000743g0090 Nicotiana tabacum HOM05D005154 ORTHO05D006270 1.9e-13 80.9 75 57.3
AagrBONN_evm.TU.Sc2ySwM_344.1569 Anthoceros agrestis HOM05D005154 ORTHO05D006270 1.2e-12 78.2 133 40.6
SMO171G0129 Selaginella moellendorffii HOM05D005154 ORTHO05D006270 3.5e-12 76.6 130 39.2
CiPaw.11G071200 Carya illinoinensis HOM05D005154 ORTHO05D006270 1.8e-11 74.3 61 72.1
Actinidia28244 Actinidia chinensis HOM05D005154 ORTHO05D006270 1.1e-10 71.6 104 48.1
Lj2C542T6 Lonicera japonica HOM05D005154 ORTHO05D006270 9.6e-10 68.6 61 67.2
CiPaw.02G062100 Carya illinoinensis HOM05D005154 ORTHO05D006270 1.3e-06 58.2 46 76.1
MBI02_g48054_MAGBIO Magnolia biondii HOM05D005154 ORTHO05D006270 1.3e-06 58.2 43 79.1


User provided reference genes

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