Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG07G017370 Citrullus lanatus HOM05D006096 ORTHO05D007775 4.8e-307 1057.0 526 100.0
Sed0027583 Sechium edule HOM05D006096 ORTHO05D007775 8.5e-171 604.4 526 63.3
MELO3C017606.2 Cucumis melo HOM05D006096 ORTHO05D007775 5.9e-148 528.5 649 50.5
CsaV3_UNG122970 Cucumis sativus L. HOM05D006096 ORTHO05D007775 4.6e-124 449.1 426 60.6
Prupe.6G191000 Prunus persica HOM05D006096 ORTHO05D007775 9.3e-117 424.9 529 47.1
RcHm_v2.0_Chr2g0112761 Rosa chinensis HOM05D006096 ORTHO05D007775 2.1e-113 413.7 526 46.8
Duzib187G1253 Durio zibethinus HOM05D006096 ORTHO05D007775 3.1e-112 409.8 526 46.8
CsaV3_4G004600 Cucumis sativus L. HOM05D006096 ORTHO05D007775 5.3e-112 409.1 426 56.8
MD01G1033500 Malus domestica HOM05D006096 ORTHO05D007775 9.9e-111 404.8 527 46.1
FvH4_1g20510 Fragaria vesca HOM05D006096 ORTHO05D007775 5.4e-109 399.1 529 45.7
Potri.005G073600 Populus trichocarpa HOM05D006096 ORTHO05D007775 5.4e-109 399.1 533 45.2
Cpa.g.sc55.89 Carica papaya HOM05D006096 ORTHO05D007775 3.5e-108 396.4 532 45.5
Glyma.11G241200 Glycine max HOM05D006096 ORTHO05D007775 4.6e-108 396.0 528 44.3
Gorai.011G113400 Gossypium raimondii HOM05D006096 ORTHO05D007775 6.0e-108 395.6 530 45.3
Glyma.18G015800 Glycine max HOM05D006096 ORTHO05D007775 6.6e-107 392.1 530 43.8
vmacro18587 Vaccinium macrocarpon HOM05D006096 ORTHO05D007775 6.6e-107 392.1 529 44.8
TWI53G1189 Tripterygium wilfordii HOM05D006096 ORTHO05D007775 4.3e-106 389.4 538 45.0
Gohir.A10G085100 Gossypium hirsutum HOM05D006096 ORTHO05D007775 5.6e-106 389.0 530 45.1
AT5G10320 Arabidopsis thaliana HOM05D006096 ORTHO05D007775 7.4e-106 388.7 526 44.9
Atru.chr3.1373 Acer truncatum HOM05D006096 ORTHO05D007775 1.3e-105 387.9 533 45.0
Eucgr.H04751 Eucalyptus grandis HOM05D006096 ORTHO05D007775 8.1e-105 385.2 529 44.4
AL6G20820 Arabidopsis lyrata HOM05D006096 ORTHO05D007775 3.1e-104 383.3 527 44.0
Sc16g0000180 Simmondsia chinensis HOM05D006096 ORTHO05D007775 5.3e-104 382.5 532 44.0
Medtr3g087010 Medicago truncatula HOM05D006096 ORTHO05D007775 2.6e-103 380.2 529 42.3
MBI02_g02177_MAGBIO Magnolia biondii HOM05D006096 ORTHO05D007775 4.5e-103 379.4 538 44.2
TPR.G15994 Trifolium pratense HOM05D006096 ORTHO05D007775 7.6e-103 378.6 525 41.7
Phvul.001G253200 Phaseolus vulgaris HOM05D006096 ORTHO05D007775 1.7e-102 377.5 526 42.6
Lalb_Chr19g0127391 Lupinus albus HOM05D006096 ORTHO05D007775 4.9e-102 375.9 525 45.0
Nn1g05418 Nelumbo nucifera HOM05D006096 ORTHO05D007775 4.9e-102 375.9 536 42.9
CSS0046442 Camellia sinensis var. sinensis HOM05D006096 ORTHO05D007775 8.4e-102 375.2 534 44.8
Psat5g090600 Pisum sativum HOM05D006096 ORTHO05D007775 1.4e-101 374.4 525 41.9
Cc07_g14840 Coffea canephora HOM05D006096 ORTHO05D007775 2.4e-101 373.6 536 44.0
CANSAT01G2346 Cannabis sativa HOM05D006096 ORTHO05D007775 7.1e-101 372.1 573 40.8
VMungo1383G2853 Vigna mungo HOM05D006096 ORTHO05D007775 7.1e-101 372.1 538 42.0
BcaC04g19312 Brassica carinata HOM05D006096 ORTHO05D007775 1.6e-100 370.9 524 42.2
BolC9t59480H Brassica oleracea HOM05D006096 ORTHO05D007775 1.6e-100 370.9 522 42.5
arahy.Tifrunner.gnm1.ann1.C4UPUA Arachis hypogaea HOM05D006096 ORTHO05D007775 2.7e-100 370.2 532 43.6
PGSC0003DMG400016160 Solanum tuberosum HOM05D006096 ORTHO05D007775 3.5e-100 369.8 532 44.4
C09p67070 Brassica napus HOM05D006096 ORTHO05D007775 7.9e-100 368.6 527 42.9
Lj6g0005810 Lotus japonicus HOM05D006096 ORTHO05D007775 3.0e-99 366.7 542 42.6
arahy.Tifrunner.gnm1.ann1.DD3ZZY Arachis hypogaea HOM05D006096 ORTHO05D007775 5.1e-99 365.9 560 41.6
Aqoxy6G00746 Aquilegia oxysepala HOM05D006096 ORTHO05D007775 3.3e-98 363.2 529 42.2
BraA10t44776Z Brassica rapa HOM05D006096 ORTHO05D007775 3.3e-98 363.2 529 42.0
BcaB08g37116 Brassica carinata HOM05D006096 ORTHO05D007775 5.6e-98 362.5 534 41.2
Sopen11g004830 Solanum pennellii HOM05D006096 ORTHO05D007775 7.4e-98 362.1 532 43.8
TAR625G1553 Trochodendron aralioides HOM05D006096 ORTHO05D007775 7.4e-98 362.1 483 45.5
A10p27260 Brassica napus HOM05D006096 ORTHO05D007775 1.6e-97 360.9 529 42.0
AUR62001986 Chenopodium quinoa HOM05D006096 ORTHO05D007775 1.4e-96 357.8 569 41.1
Lsat_1_v5_gn_5_34320 Lactuca sativa HOM05D006096 ORTHO05D007775 1.2e-95 354.8 524 42.0
Actinidia28854 Actinidia chinensis HOM05D006096 ORTHO05D007775 2.6e-95 353.6 532 42.9
EL10Ac6g15136 Beta vulgaris HOM05D006096 ORTHO05D007775 2.6e-95 353.6 565 40.7
COL.COLO4_27275 Corchorus olitorius HOM05D006096 ORTHO05D007775 1.3e-94 351.3 532 42.5
Migut.H02345 Erythranthe guttata HOM05D006096 ORTHO05D007775 6.5e-94 349.0 522 41.4
PSO210G0897 Papaver somniferum HOM05D006096 ORTHO05D007775 8.4e-94 348.6 528 40.5
Aa31LG3G16830 Aethionema arabicum HOM05D006096 ORTHO05D007775 3.2e-93 346.7 534 39.9
FAN23G0863 Fragaria x ananassa HOM05D006096 ORTHO05D007775 4.3e-90 336.3 533 40.7
Peaxi162Scf00381g01013 Petunia axillaris HOM05D006096 ORTHO05D007775 4.3e-90 336.3 531 41.1
Hund13600 Selenicereus undatus HOM05D006096 ORTHO05D007775 9.6e-90 335.1 603 39.0
CAN.G905.37 Capsicum annuum HOM05D006096 ORTHO05D007775 3.7e-89 333.2 275 63.3
Oeu033049.1 Olea europaea HOM05D006096 ORTHO05D007775 1.4e-88 331.3 265 62.6
Os04g0451100 Oryza sativa ssp. japonica HOM05D006096 ORTHO05D007775 1.2e-87 328.2 527 41.4
ECA246G2908 Erigeron canadensis HOM05D006096 ORTHO05D007775 2.6e-87 327.0 554 39.5
ATR0684G225 Amborella trichopoda HOM05D006096 ORTHO05D007775 3.8e-86 323.2 534 39.7
CARHR202970 Cardamine hirsuta HOM05D006096 ORTHO05D007775 8.4e-86 322.0 265 61.9
Thhalv10013818m.g Eutrema salsugineum HOM05D006096 ORTHO05D007775 1.4e-85 321.2 531 39.2
Sabra05G0060100 Salix brachista HOM05D006096 ORTHO05D007775 9.3e-85 318.5 520 39.8
BcaC04g19315 Brassica carinata HOM05D006096 ORTHO05D007775 2.1e-84 317.4 272 59.2
CARHR202960 Cardamine hirsuta HOM05D006096 ORTHO05D007775 2.7e-84 317.0 262 61.1
Rhsim08G0012600 Rhododendron simsii HOM05D006096 ORTHO05D007775 3.5e-84 316.6 528 39.4
CsaV3_UNG223570 Cucumis sativus L. HOM05D006096 ORTHO05D007775 1.9e-82 310.8 235 70.2
QL06p048476 Quercus lobata HOM05D006096 ORTHO05D007775 2.5e-82 310.5 275 58.5
CsaV3_UNG160190 Cucumis sativus L. HOM05D006096 ORTHO05D007775 2.2e-81 307.4 235 72.3
Zm00001eb081250 Zea mays HOM05D006096 ORTHO05D007775 2.8e-81 307.0 259 60.2
HPP92_011214 Vanilla planifolia HOM05D006096 ORTHO05D007775 8.2e-81 305.4 523 39.2
SGA_v2.0_scaffold111G31503 Striga asiatica HOM05D006096 ORTHO05D007775 1.8e-80 304.3 526 38.8
FAN19G2919 Fragaria x ananassa HOM05D006096 ORTHO05D007775 5.9e-79 299.3 526 39.2
PSO447G0355 Papaver somniferum HOM05D006096 ORTHO05D007775 5.5e-77 292.7 530 35.8
Haze_24882 Corylus avellana HOM05D006096 ORTHO05D007775 2.2e-73 280.8 573 36.6
AUR62003818 Chenopodium quinoa HOM05D006096 ORTHO05D007775 5.3e-72 276.2 279 55.2
Pp3c26_3770 Physcomitrium patens HOM05D006096 ORTHO05D007775 4.5e-71 273.1 262 52.3
QL06p048506 Quercus lobata HOM05D006096 ORTHO05D007775 5.9e-71 272.7 455 40.4
CiPaw.03G143900 Carya illinoinensis HOM05D006096 ORTHO05D007775 1.3e-70 271.6 444 41.9
Cfa002624 Carpinus fangiana HOM05D006096 ORTHO05D007775 2.2e-70 270.8 441 41.0
Nitab4.5_0004570g0020 Nicotiana tabacum HOM05D006096 ORTHO05D007775 2.5e-69 267.3 274 52.2
Thecc.01G097900 Theobroma cacao HOM05D006096 ORTHO05D007775 5.5e-69 266.2 429 41.3
Dinv08841 Davidia involucrata HOM05D006096 ORTHO05D007775 3.6e-68 263.5 437 40.7
Ciclev10026196m.g Citrus clementina HOM05D006096 ORTHO05D007775 1.4e-67 261.5 435 40.7
unitig_899.g14550 Utricularia gibba HOM05D006096 ORTHO05D007775 8.8e-67 258.8 301 47.2
Manes.13G095500 Manihot esculenta HOM05D006096 ORTHO05D007775 1.3e-65 255.0 438 38.1
Gohir.D10G103900 Gossypium hirsutum HOM05D006096 ORTHO05D007775 4.8e-65 253.1 433 39.7
SalBow3G4176 Salvia bowleyana HOM05D006096 ORTHO05D007775 2.6e-63 247.3 274 50.4
Pp3c3_14090 Physcomitrium patens HOM05D006096 ORTHO05D007775 1.9e-61 241.1 241 52.7
Mapoly0077s0016 Marchantia polymorpha HOM05D006096 ORTHO05D007775 1.0e-59 235.3 304 45.7
Sp6g33110 Schrenkiella parvula HOM05D006096 ORTHO05D007775 1.4e-59 235.0 432 36.3
Haze_24873 Corylus avellana HOM05D006096 ORTHO05D007775 3.3e-58 230.3 553 33.3
Solyc11g009060.2 Solanum lycopersicum HOM05D006096 ORTHO05D007775 4.4e-58 229.9 434 38.0
CBR_g26374 Chara braunii HOM05D006096 ORTHO05D007775 5.7e-58 229.6 283 45.2
FAN28G1526 Fragaria x ananassa HOM05D006096 ORTHO05D007775 4.8e-57 226.5 530 34.3
CBR_g53530 Chara braunii HOM05D006096 ORTHO05D007775 4.5e-55 219.9 264 43.9
Carub.0006s0879 Capsella rubella HOM05D006096 ORTHO05D007775 7.7e-55 219.2 415 36.6
HanXRQChr02g0032011 Helianthus annuus HOM05D006096 ORTHO05D007775 3.6e-52 210.3 428 34.6
DCAR_014211 Daucus carota HOM05D006096 ORTHO05D007775 6.3e-49 199.5 415 34.7
SMO301G0024 Selaginella moellendorffii HOM05D006096 ORTHO05D007775 4.1e-48 196.8 184 56.0
Ca_16518_v3 Cicer arietinum L. HOM05D006096 ORTHO05D007775 1.5e-42 178.3 431 30.4
HanXRQChr15g0477621 Helianthus annuus HOM05D006096 ORTHO05D007775 8.3e-41 172.6 261 40.6
AagrBONN_evm.TU.Sc2ySwM_344.1220 Anthoceros agrestis HOM05D006096 ORTHO05D007775 1.1e-37 162.2 171 52.6
CARHR202980 Cardamine hirsuta HOM05D006096 ORTHO05D007775 3.6e-36 157.1 379 31.1
CsaV3_UNG160180 Cucumis sativus L. HOM05D006096 ORTHO05D007775 1.8e-35 154.8 210 45.2
GSVIVG01006632001 Vitis vinifera HOM05D006096 ORTHO05D007775 6.8e-35 152.9 102 72.5
MSTRG.23356 Avicennia marina HOM05D006096 ORTHO05D007775 6.4e-33 146.4 405 32.6
QL06p048511 Quercus lobata HOM05D006096 ORTHO05D007775 4.1e-32 143.7 98 68.4
Nitab4.5_0000743g0130 Nicotiana tabacum HOM05D006096 ORTHO05D007775 2.7e-31 141.0 523 27.2
Carub.0006s0878 Capsella rubella HOM05D006096 ORTHO05D007775 1.1e-29 135.6 85 77.6
Cre17.g719050 Chlamydomonas reinhardtii HOM05D006096 ORTHO05D007775 1.1e-29 135.6 260 33.1
CDE06G0254 Ceratophyllum demersum HOM05D006096 ORTHO05D007775 1.6e-28 131.7 242 36.8
CsaV3_UNG124970 Cucumis sativus L. HOM05D006096 ORTHO05D007775 1.2e-23 115.5 63 92.1
Gohir.D10G103800 Gossypium hirsutum HOM05D006096 ORTHO05D007775 1.2e-23 115.5 81 64.2
BcaB02g08416 Brassica carinata HOM05D006096 ORTHO05D007775 2.5e-21 107.8 81 66.7
HanXRQChr02g0032001 Helianthus annuus HOM05D006096 ORTHO05D007775 5.2e-19 100.1 65 78.5
SEGI_01830 Sequoiadendron giganteum HOM05D006096 ORTHO05D007775 1.3e-17 95.5 117 43.6
Ah.02g123840 Amaranthus hybridus HOM05D006096 ORTHO05D007775 5.4e-16 90.1 67 58.2
Cc03_g11790 Coffea canephora HOM05D006096 ORTHO05D007775 1.6e-15 88.6 110 46.4
SEGI_02986 Sequoiadendron giganteum HOM05D006096 ORTHO05D007775 4.6e-15 87.0 61 63.9
Actinidia28243 Actinidia chinensis HOM05D006096 ORTHO05D009823 2.1e-12 78.2 217 32.7
RcHm_v2.0_Chr4g0406191 Rosa chinensis HOM05D006096 ORTHO05D007775 7.6e-10 69.7 58 63.8
Nitab4.5_0004570g0030 Nicotiana tabacum HOM05D006096 ORTHO05D007775 1.4e-08 65.5 64 53.1
Cc08_g12120 Coffea canephora HOM05D005131 ORTHO05D003188 7.8e-07 59.7 66 54.5


User provided reference genes

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