Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG07G017360 Citrullus lanatus HOM05D005879 ORTHO05D007432 3.8e-191 671.4 352 100.0
MELO3C017607.2 Cucumis melo HOM05D005879 ORTHO05D007432 4.0e-172 608.2 351 91.5
CsaV3_4G004590 Cucumis sativus L. HOM05D005879 ORTHO05D007432 8.2e-170 600.5 351 90.0
CsaV3_UNG120970 Cucumis sativus L. HOM05D005879 ORTHO05D007432 8.2e-170 600.5 351 90.0
CsaV3_UNG160200 Cucumis sativus L. HOM05D005879 ORTHO05D007432 8.2e-170 600.5 351 90.0
CsaV3_UNG223580 Cucumis sativus L. HOM05D005879 ORTHO05D007432 8.2e-170 600.5 351 90.0
Sed0022481 Sechium edule HOM05D005879 ORTHO05D007432 1.4e-148 530.0 336 82.7
Cfa017077 Carpinus fangiana HOM05D005879 ORTHO05D007432 7.3e-126 454.5 337 68.8
Haze_24910 Corylus avellana HOM05D005879 ORTHO05D007432 3.1e-124 449.1 324 69.4
Haze_24914 Corylus avellana HOM05D005879 ORTHO05D007432 3.1e-124 449.1 324 69.4
QL06p049237 Quercus lobata HOM05D005879 ORTHO05D007432 2.0e-123 446.4 360 66.4
Prupe.6G188100 Prunus persica HOM05D005879 ORTHO05D007432 2.5e-118 429.5 349 67.0
MD05G1043000 Malus domestica HOM05D005879 ORTHO05D007432 1.2e-117 427.2 351 65.5
CiPaw.03G142700 Carya illinoinensis HOM05D005879 ORTHO05D007432 1.4e-116 423.7 326 66.9
TAR381G0927 Trochodendron aralioides HOM05D005879 ORTHO05D007432 1.9e-110 403.3 347 61.1
TWI77G0137 Tripterygium wilfordii HOM05D005879 ORTHO05D007432 7.3e-110 401.4 354 60.7
RcHm_v2.0_Chr2g0113151 Rosa chinensis HOM05D005879 ORTHO05D007432 1.6e-109 400.2 339 62.2
THA.LOC104807688 Tarenaya hassleriana HOM05D005879 ORTHO05D007432 3.6e-109 399.1 354 62.4
Nn2g14007 Nelumbo nucifera HOM05D005879 ORTHO05D007432 6.2e-109 398.3 336 61.3
Gohir.A11G202400 Gossypium hirsutum HOM05D005879 ORTHO05D007432 4.0e-108 395.6 332 63.0
Dinv21896 Davidia involucrata HOM05D005879 ORTHO05D007432 1.5e-107 393.7 349 59.3
Cpa.g.sc615.1 Carica papaya HOM05D005879 ORTHO05D007432 9.9e-107 391.0 346 61.0
FAN26G1261 Fragaria x ananassa HOM05D005879 ORTHO05D007432 4.9e-106 388.7 345 61.7
Lalb_Chr06g0163471 Lupinus albus HOM05D005879 ORTHO05D007432 8.4e-106 387.9 341 61.0
Lj4g0026645 Lotus japonicus HOM05D005879 ORTHO05D007432 5.4e-105 385.2 338 60.9
CARHR246770 Cardamine hirsuta HOM05D005879 ORTHO05D007432 1.6e-104 383.6 353 60.3
Gorai.007G237000 Gossypium raimondii HOM05D005879 ORTHO05D007432 1.6e-104 383.6 332 61.4
AL7G12180 Arabidopsis lyrata HOM05D005879 ORTHO05D007432 2.1e-104 383.3 354 60.2
Eucgr.B03900 Eucalyptus grandis HOM05D005879 ORTHO05D007432 2.1e-104 383.3 343 60.1
TPR.G6200 Trifolium pratense HOM05D005879 ORTHO05D007432 2.1e-104 383.3 360 57.8
TWI81G0999 Tripterygium wilfordii HOM05D005879 ORTHO05D007432 2.1e-104 383.3 339 60.8
FvH4_1g20700 Fragaria vesca HOM05D005879 ORTHO05D007432 2.7e-104 382.9 342 61.4
Gohir.D11G220800 Gossypium hirsutum HOM05D005879 ORTHO05D007432 2.7e-104 382.9 332 61.1
Aa31LG6G15340 Aethionema arabicum HOM05D005879 ORTHO05D007432 7.9e-104 381.3 334 60.8
PSO339G2019 Papaver somniferum HOM05D005879 ORTHO05D007432 1.3e-103 380.6 350 58.6
Ca_17743_v3 Cicer arietinum L. HOM05D005879 ORTHO05D007432 2.3e-103 379.8 352 58.8
Manes.12G134100 Manihot esculenta HOM05D005879 ORTHO05D007432 3.0e-103 379.4 352 57.7
Carub.0007s0187 Capsella rubella HOM05D005879 ORTHO05D007432 5.6e-102 375.2 358 57.8
PSO801G0022 Papaver somniferum HOM05D005879 ORTHO05D007432 7.4e-102 374.8 350 58.9
arahy.Tifrunner.gnm1.ann1.Y76I0L Arachis hypogaea HOM05D005879 ORTHO05D007432 1.3e-101 374.0 337 59.1
Ciclev10020973m.g Citrus clementina HOM05D005879 ORTHO05D007432 1.3e-101 374.0 332 61.7
VMungo0251G0721 Vigna mungo HOM05D005879 ORTHO05D007432 2.8e-101 372.9 328 58.5
COL.COLO4_27255 Corchorus olitorius HOM05D005879 ORTHO05D007432 6.2e-101 371.7 309 63.1
Glyma.08G134800 Glycine max HOM05D005879 ORTHO05D007432 1.8e-100 370.2 335 58.2
Sabra05G0061500 Salix brachista HOM05D005879 ORTHO05D007432 1.8e-100 370.2 345 58.8
Hma1.2p1_0308F.1_g120270 Hydrangea macrophylla HOM05D005879 ORTHO05D007432 3.1e-100 369.4 327 59.6
HanXRQChr17g0554861 Helianthus annuus HOM05D005879 ORTHO05D007432 5.3e-100 368.6 354 55.4
arahy.Tifrunner.gnm1.ann1.F9QSZL Arachis hypogaea HOM05D005879 ORTHO05D007432 6.9e-100 368.2 336 57.7
Medtr8g090180 Medicago truncatula HOM05D005879 ORTHO05D007432 9.0e-100 367.9 348 57.5
PGSC0003DMG400027189 Solanum tuberosum HOM05D005879 ORTHO05D007432 1.5e-99 367.1 360 57.5
Sc05g0001510 Simmondsia chinensis HOM05D005879 ORTHO05D007432 4.5e-99 365.5 356 54.2
Solyc05g052840.1 Solanum lycopersicum HOM05D005879 ORTHO05D007432 5.8e-99 365.2 342 59.4
PSO170G2230 Papaver somniferum HOM05D005879 ORTHO05D007432 7.6e-99 364.8 352 57.1
Potri.005G074700 Populus trichocarpa HOM05D005879 ORTHO05D007432 9.9e-99 364.4 345 57.4
Sopen05g031350 Solanum pennellii HOM05D005879 ORTHO05D007432 1.7e-98 363.6 360 57.5
Ah.11g050680 Amaranthus hybridus HOM05D005879 ORTHO05D007432 6.4e-98 361.7 346 56.4
Peaxi162Scf00054g00186 Petunia axillaris HOM05D005879 ORTHO05D007432 1.4e-97 360.5 354 56.5
Aqoxy3G00238 Aquilegia oxysepala HOM05D005879 ORTHO05D007432 3.2e-97 359.4 355 54.6
AT4G39920 Arabidopsis thaliana HOM05D005879 ORTHO05D007432 4.2e-97 359.0 351 56.4
Sp7g35960 Schrenkiella parvula HOM05D005879 ORTHO05D007432 5.5e-97 358.6 353 56.4
EL10Ac5g10569 Beta vulgaris HOM05D005879 ORTHO05D007432 2.1e-96 356.7 355 54.9
Atru.chr7.1487 Acer truncatum HOM05D005879 ORTHO05D007432 7.9e-96 354.8 335 57.3
Phvul.002G256800 Phaseolus vulgaris HOM05D005879 ORTHO05D007432 1.3e-95 354.0 328 56.4
Nitab4.5_0009581g0010 Nicotiana tabacum HOM05D005879 ORTHO05D007432 1.8e-95 353.6 361 56.5
AUR62008049 Chenopodium quinoa HOM05D005879 ORTHO05D007432 5.1e-95 352.1 353 54.7
AUR62028624 Chenopodium quinoa HOM05D005879 ORTHO05D007432 1.5e-94 350.5 351 54.4
MBI05_g37046_MAGBIO Magnolia biondii HOM05D005879 ORTHO05D007432 1.5e-94 350.5 364 54.4
Cc07_g15080 Coffea canephora HOM05D005879 ORTHO05D007432 5.6e-94 348.6 356 54.2
ECA233G0618 Erigeron canadensis HOM05D005879 ORTHO05D007432 2.1e-93 346.7 355 53.5
BolC7t46692H Brassica oleracea HOM05D005879 ORTHO05D007432 2.8e-93 346.3 344 57.3
Thhalv10025595m.g Eutrema salsugineum HOM05D005879 ORTHO05D007432 1.1e-92 344.4 354 55.6
Glyma.05G177800 Glycine max HOM05D005879 ORTHO05D007432 1.1e-92 344.4 332 56.6
BraA03t15633Z Brassica rapa HOM05D005879 ORTHO05D007432 1.8e-92 343.6 339 56.6
ATR0584G053 Amborella trichopoda HOM05D005879 ORTHO05D007432 2.4e-92 343.2 339 53.4
A03p65800 Brassica napus HOM05D005879 ORTHO05D007432 4.0e-92 342.4 339 56.3
CAN.G151.26 Capsicum annuum HOM05D005879 ORTHO05D007432 4.0e-92 342.4 350 54.6
Duzib147G1529 Durio zibethinus HOM05D005879 ORTHO05D007432 7.6e-91 338.2 266 63.9
C07p62780 Brassica napus HOM05D005879 ORTHO05D007432 1.3e-90 337.4 344 56.1
MSTRG.3773 Avicennia marina HOM05D005879 ORTHO05D007432 2.9e-90 336.3 345 55.1
Lsat_1_v5_gn_8_137181 Lactuca sativa HOM05D005879 ORTHO05D007432 2.9e-90 336.3 334 54.2
Rhsim01G0133800 Rhododendron simsii HOM05D005879 ORTHO05D007432 1.4e-89 334.0 362 52.2
RhsimUnG0233600 Rhododendron simsii HOM05D005879 ORTHO05D007432 1.4e-89 334.0 362 52.2
vmacro12962 Vaccinium macrocarpon HOM05D005879 ORTHO05D007432 9.3e-89 331.3 381 49.6
DCAR_003483 Daucus carota HOM05D005879 ORTHO05D007432 6.0e-88 328.6 342 52.0
Thecc.01G100600 Theobroma cacao HOM05D005879 ORTHO05D007432 7.9e-88 328.2 333 52.6
unitig_32.g10701 Utricularia gibba HOM05D005879 ORTHO05D007432 2.3e-87 326.6 337 53.4
SGA_v2.0_scaffold334G49051 Striga asiatica HOM05D005879 ORTHO05D007432 3.0e-87 326.2 340 54.1
Oeu032409.1 Olea europaea HOM05D005879 ORTHO05D007432 3.9e-87 325.9 335 56.7
SGA_v2.0_scaffold115G32189 Striga asiatica HOM05D005879 ORTHO05D007432 5.7e-86 322.0 340 53.8
Migut.L00135 Erythranthe guttata HOM05D005879 ORTHO05D007432 2.1e-85 320.1 351 51.9
FAN19G0980 Fragaria x ananassa HOM05D005879 ORTHO05D007432 1.5e-83 313.9 324 54.0
PGR102G2441 Punica granatum HOM05D005879 ORTHO05D007432 3.8e-82 309.3 347 50.1
SalBow7G4497 Salvia bowleyana HOM05D005879 ORTHO05D007432 2.5e-81 306.6 326 53.7
vmacro17311 Vaccinium macrocarpon HOM05D005879 ORTHO05D007432 1.5e-78 297.4 328 50.3
CDE04G0616 Ceratophyllum demersum HOM05D005879 ORTHO05D007432 5.7e-78 295.4 354 47.7
HPP92_013925 Vanilla planifolia HOM05D005879 ORTHO05D007432 7.7e-75 285.0 355 46.8
Zm00001eb243870 Zea mays HOM05D005879 ORTHO05D007432 5.1e-71 272.3 330 46.1
Mapoly0002s0046 Marchantia polymorpha HOM05D005879 ORTHO05D007432 7.4e-70 268.5 342 45.9
Os02g0557000 Oryza sativa ssp. japonica HOM05D005879 ORTHO05D007432 3.1e-68 263.1 330 46.7
Hma1.2p1_0308F.1_g120280 Hydrangea macrophylla HOM05D005879 ORTHO05D007432 6.9e-68 261.9 182 67.0
VMungo0540G1211 Vigna mungo HOM05D005879 ORTHO05D007432 5.9e-67 258.8 206 60.7
Pp3c13_2250 Physcomitrium patens HOM05D005879 ORTHO05D007432 1.4e-65 254.2 336 46.1
arahy.Tifrunner.gnm1.ann1.DH96WI Arachis hypogaea HOM05D005879 ORTHO05D007432 4.2e-65 252.7 309 46.3
SMO143G0283 Selaginella moellendorffii HOM05D005879 ORTHO05D007432 8.8e-63 245.0 323 41.5
Atru.chr11.1549 Acer truncatum HOM05D005879 ORTHO05D007432 4.4e-62 242.7 173 65.9
AagrBONN_evm.TU.Sc2ySwM_117.1918 Anthoceros agrestis HOM05D005879 ORTHO05D007432 2.0e-59 233.8 331 39.9
Psat7g055120 Pisum sativum HOM05D005879 ORTHO05D007432 4.0e-55 219.5 339 42.2
Atru.chr7.1491 Acer truncatum HOM05D005879 ORTHO05D007432 1.1e-54 218.0 249 53.0
CBR_g8978 Chara braunii HOM05D006002 ORTHO05D007651 1.1e-54 218.0 365 38.9
FAN23G0004 Fragaria x ananassa HOM05D005879 ORTHO05D007432 4.8e-53 212.6 128 76.6
SEGI_25682 Sequoiadendron giganteum HOM05D005879 ORTHO05D007432 8.2e-53 211.8 203 50.2
MCO11G662 Micromonas commoda HOM05D005879 ORTHO05D007432 9.4e-49 198.4 368 35.6
MD01G1031400 Malus domestica HOM05D005879 ORTHO05D007432 2.6e-46 190.3 128 67.2
C03p78540 Brassica napus HOM05D005879 ORTHO05D007432 4.4e-46 189.5 334 42.8
Potri.007G093800 Populus trichocarpa HOM05D005879 ORTHO05D007432 1.7e-45 187.6 344 36.9
BolC3t20106H Brassica oleracea HOM05D005879 ORTHO05D007432 4.0e-39 166.4 334 39.8
BcaB03g12293 Brassica carinata HOM05D005879 ORTHO05D007432 2.6e-38 163.7 212 48.6
PRCOL_00003435 Prasinoderma coloniale HOM05D005879 ORTHO05D007432 1.8e-36 157.5 345 32.8
GSVIVG01004856001 Vitis vinifera HOM05D005879 ORTHO05D007432 2.3e-34 150.6 132 67.4
Actinidia28237 Actinidia chinensis HOM05D005879 ORTHO05D007432 1.9e-33 147.5 322 34.8
HPP92_014012 Vanilla planifolia HOM05D005879 ORTHO05D007432 4.7e-32 142.9 257 39.3
Cre03.g200150 Chlamydomonas reinhardtii HOM05D005879 ORTHO05D007432 6.8e-31 139.0 334 29.3
Migut.L00117 Erythranthe guttata HOM05D005879 ORTHO05D007432 2.9e-29 133.7 86 72.1
BcaNung02300 Brassica carinata HOM05D005879 ORTHO05D007432 1.0e-26 125.2 167 49.7
MBI15_g14577_MAGBIO Magnolia biondii HOM05D005879 ORTHO05D007432 1.5e-22 111.3 69 69.6
SEGI_41531 Sequoiadendron giganteum HOM05D005879 ORTHO05D007432 5.4e-20 102.8 144 48.6
BraA08t34278Z Brassica rapa HOM05D005879 ORTHO05D007432 2.7e-19 100.5 76 65.8
Hma1.2p1_0297F.1_g117050 Hydrangea macrophylla HOM05D005879 ORTHO05D007432 2.7e-19 100.5 90 57.8
A08p23210 Brassica napus HOM05D005879 ORTHO05D007432 2.0e-14 84.3 82 52.4
PRCOL_00004923 Prasinoderma coloniale HOM05D005879 ORTHO05D034414 1.7e-13 81.3 132 30.3
Pp3c4_21480 Physcomitrium patens HOM05D005879 ORTHO05D007432 1.5e-09 68.2 58 56.9
Medtr1g108500 Medicago truncatula HOM05D011368 ORTHO05D000135 6.2e-08 62.8 106 36.8
BcaC01g00330 Brassica carinata HOM05D005879 ORTHO05D007432 4.0e-07 60.1 162 37.0
Cfa025806 Carpinus fangiana HOM05D005879 ORTHO05D123935 5.2e-07 59.7 110 30.0


User provided reference genes

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