Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG07G017310 Citrullus lanatus HOM05D002799 ORTHO05D007076 2.7e-203 711.8 368 100.0
CsaV3_4G004510 Cucumis sativus L. HOM05D002799 ORTHO05D007076 3.5e-171 605.1 373 80.4
Sed0006194 Sechium edule HOM05D002799 ORTHO05D007076 4.3e-161 571.6 372 77.4
MELO3C017614.2 Cucumis melo HOM05D002799 ORTHO05D007076 3.1e-159 565.5 398 73.1
GSVIVG01024449001 Vitis vinifera HOM05D002799 ORTHO05D007076 1.7e-125 453.4 338 68.6
Manes.08G164400 Manihot esculenta HOM05D002799 ORTHO05D007076 2.2e-125 453.0 350 66.3
QL09p025824 Quercus lobata HOM05D002799 ORTHO05D007076 4.6e-123 445.3 347 67.4
Potri.015G079500 Populus trichocarpa HOM05D002799 ORTHO05D007076 6.0e-123 444.9 369 63.4
COL.COLO4_24619 Corchorus olitorius HOM05D002799 ORTHO05D007076 7.9e-123 444.5 338 67.2
CiPaw.05G237100 Carya illinoinensis HOM05D002799 ORTHO05D007076 1.3e-122 443.7 350 65.1
Duzib211G0014 Durio zibethinus HOM05D002799 ORTHO05D007076 1.9e-121 439.9 352 63.4
Atru.chr12.2008 Acer truncatum HOM05D002799 ORTHO05D007076 7.4e-121 438.0 381 60.9
Gohir.A09G055000 Gossypium hirsutum HOM05D002799 ORTHO05D007076 7.4e-121 438.0 336 65.8
TAR374G0973 Trochodendron aralioides HOM05D002799 ORTHO05D007076 2.2e-120 436.4 338 66.9
Thecc.08G172500 Theobroma cacao HOM05D002799 ORTHO05D007076 8.2e-120 434.5 351 64.7
Gorai.006G053300 Gossypium raimondii HOM05D002799 ORTHO05D007076 1.1e-119 434.1 337 66.5
MD01G1233700 Malus domestica HOM05D002799 ORTHO05D007076 1.8e-119 433.3 343 64.1
Prupe.2G323900 Prunus persica HOM05D002799 ORTHO05D007076 3.1e-119 432.6 342 64.3
Ciclev10001355m.g Citrus clementina HOM05D002799 ORTHO05D007076 5.3e-119 431.8 323 68.7
Gohir.D09G053900 Gossypium hirsutum HOM05D002799 ORTHO05D007076 6.9e-119 431.4 336 65.5
Dinv17267 Davidia involucrata HOM05D002799 ORTHO05D007076 1.5e-118 430.3 333 67.3
CSS0010295 Camellia sinensis var. sinensis HOM05D002799 ORTHO05D007076 2.2e-117 426.4 337 65.6
Eucgr.K00095 Eucalyptus grandis HOM05D002799 ORTHO05D007076 3.6e-115 419.1 322 65.5
Actinidia08737 Actinidia chinensis HOM05D002799 ORTHO05D007076 7.9e-115 417.9 338 64.2
Lj3g0008833 Lotus japonicus HOM05D002799 ORTHO05D007076 1.0e-114 417.5 330 65.8
Ca_29855_v3 Cicer arietinum L. HOM05D002799 ORTHO05D007076 5.7e-113 411.8 322 66.1
FAN10G3482 Fragaria x ananassa HOM05D002799 ORTHO05D007076 5.7e-113 411.8 369 57.7
TWI34G0554 Tripterygium wilfordii HOM05D002799 ORTHO05D007076 5.7e-113 411.8 367 61.3
FAN03G1078 Fragaria x ananassa HOM05D002799 ORTHO05D007076 1.7e-112 410.2 367 57.8
MBI04_g21139_MAGBIO Magnolia biondii HOM05D002799 ORTHO05D007076 2.2e-112 409.8 331 63.1
CARHR102970 Cardamine hirsuta HOM05D002799 ORTHO05D007076 3.7e-112 409.1 361 60.7
FvH4_7g33590 Fragaria vesca HOM05D002799 ORTHO05D007076 3.7e-112 409.1 346 60.1
Thhalv10002559m.g Eutrema salsugineum HOM05D002799 ORTHO05D007076 1.1e-111 407.5 328 64.6
FAN10G0267 Fragaria x ananassa HOM05D002799 ORTHO05D007076 2.4e-111 406.4 367 56.9
Medtr4g077510 Medicago truncatula HOM05D002799 ORTHO05D007076 2.4e-111 406.4 319 65.2
VMungo1127G2112 Vigna mungo HOM05D002799 ORTHO05D007076 6.9e-111 404.8 334 63.2
Glyma.12G019100 Glycine max HOM05D002799 ORTHO05D007076 2.0e-110 403.3 320 64.4
MSTRG.11401 Avicennia marina HOM05D002799 ORTHO05D007076 4.5e-110 402.1 335 63.9
AL3G42700 Arabidopsis lyrata HOM05D002799 ORTHO05D007076 7.7e-110 401.4 323 63.8
RcHm_v2.0_Chr1g0383851 Rosa chinensis HOM05D002799 ORTHO05D007076 7.7e-110 401.4 252 75.0
Phvul.011G021500 Phaseolus vulgaris HOM05D002799 ORTHO05D007076 1.0e-109 401.0 336 62.2
SalBow5G5430 Salvia bowleyana HOM05D002799 ORTHO05D007076 1.0e-109 401.0 327 64.2
MD07G1305800 Malus domestica HOM05D002799 ORTHO05D007076 1.7e-109 400.2 344 60.8
AT2G04940 Arabidopsis thaliana HOM05D002799 ORTHO05D007076 2.9e-109 399.4 319 64.3
Nn1g02009 Nelumbo nucifera HOM05D002799 ORTHO05D007076 2.9e-109 399.4 337 61.1
THA.LOC104815357 Tarenaya hassleriana HOM05D002799 ORTHO05D007076 2.9e-109 399.4 339 62.8
Carub.0003s2662 Capsella rubella HOM05D002799 ORTHO05D007076 3.8e-109 399.1 322 62.7
Sp3g23560 Schrenkiella parvula HOM05D002799 ORTHO05D007076 8.5e-109 397.9 325 63.7
CAN.G289.47 Capsicum annuum HOM05D002799 ORTHO05D007076 1.4e-108 397.1 337 60.5
BcaC01g03181 Brassica carinata HOM05D002799 ORTHO05D007076 2.5e-108 396.4 318 64.5
A03p44540 Brassica napus HOM05D002799 ORTHO05D007076 2.5e-108 396.4 354 58.5
BolC3t17806H Brassica oleracea HOM05D002799 ORTHO05D007076 2.5e-108 396.4 318 64.5
BraA03t13587Z Brassica rapa HOM05D002799 ORTHO05D007076 2.5e-108 396.4 354 58.5
C03p55340 Brassica napus HOM05D002799 ORTHO05D007076 3.2e-108 396.0 318 64.5
FAN01G1859 Fragaria x ananassa HOM05D002799 ORTHO05D007076 4.2e-108 395.6 359 57.7
AUR62028151 Chenopodium quinoa HOM05D002799 ORTHO05D007076 9.4e-108 394.4 346 59.8
BcaB08g34494 Brassica carinata HOM05D002799 ORTHO05D007076 1.2e-107 394.0 318 63.2
Sopen03g002460 Solanum pennellii HOM05D002799 ORTHO05D007076 2.7e-107 392.9 338 60.4
ATR0829G228 Amborella trichopoda HOM05D002799 ORTHO05D007076 6.1e-107 391.7 325 63.1
Ca_04931_v3 Cicer arietinum L. HOM05D002799 ORTHO05D007076 6.1e-107 391.7 312 65.1
Solyc03g006460.4 Solanum lycopersicum HOM05D002799 ORTHO05D007076 6.1e-107 391.7 335 60.9
arahy.Tifrunner.gnm1.ann1.IZ2599 Arachis hypogaea HOM05D002799 ORTHO05D007076 7.9e-107 391.3 320 62.2
arahy.Tifrunner.gnm1.ann1.ZMX436 Arachis hypogaea HOM05D002799 ORTHO05D007076 7.9e-107 391.3 320 62.2
CANSAT21G1863 Cannabis sativa HOM05D002799 ORTHO05D007076 7.9e-107 391.3 334 60.8
Lalb_Chr03g0024441 Lupinus albus HOM05D002799 ORTHO05D007076 1.8e-106 390.2 316 63.6
EL10Ac3g05098 Beta vulgaris HOM05D002799 ORTHO05D007076 3.9e-106 389.0 332 61.1
vmacro06500 Vaccinium macrocarpon HOM05D002799 ORTHO05D007076 6.7e-106 388.3 352 59.1
Lj1C1032G6 Lonicera japonica HOM05D002799 ORTHO05D007076 8.8e-106 387.9 336 62.5
PGR004G1694 Punica granatum HOM05D002799 ORTHO05D007076 1.5e-105 387.1 320 63.1
Ah.13g072670 Amaranthus hybridus HOM05D002799 ORTHO05D007076 2.0e-105 386.7 332 59.6
Psat7g171360 Pisum sativum HOM05D002799 ORTHO05D007076 3.7e-104 382.5 317 63.1
Aa31LG3G2760 Aethionema arabicum HOM05D002799 ORTHO05D007076 8.2e-104 381.3 316 63.3
PGSC0003DMG400012810 Solanum tuberosum HOM05D002799 ORTHO05D007076 2.4e-103 379.8 341 59.2
PSO782G0547 Papaver somniferum HOM05D002799 ORTHO05D007076 9.1e-103 377.9 340 60.6
Migut.I00118 Erythranthe guttata HOM05D002799 ORTHO05D007076 2.6e-102 376.3 336 61.0
PSO063G7569 Papaver somniferum HOM05D002799 ORTHO05D007076 2.9e-101 372.9 331 59.8
Cc03_g15080 Coffea canephora HOM05D002799 ORTHO05D007076 5.0e-101 372.1 359 56.8
HPP92_015127 Vanilla planifolia HOM05D002799 ORTHO05D007076 1.1e-100 370.9 325 58.8
CDE01G0680 Ceratophyllum demersum HOM05D000526 ORTHO05D000956 9.4e-100 367.9 325 60.0
Oeu014983.2 Olea europaea HOM05D002799 ORTHO05D007076 1.6e-99 367.1 364 55.8
Hma1.2p1_0758F.1_g213600 Hydrangea macrophylla HOM05D002799 ORTHO05D007076 2.1e-99 366.7 242 73.1
Aqoxy3G02040 Aquilegia oxysepala HOM05D002799 ORTHO05D007076 3.6e-99 365.9 320 59.1
DCAR_009002 Daucus carota HOM05D002799 ORTHO05D007076 9.7e-97 357.8 339 58.1
HanXRQChr04g0105251 Helianthus annuus HOM05D002799 ORTHO05D007076 3.5e-94 349.4 332 58.1
AUR62005914 Chenopodium quinoa HOM05D002799 ORTHO05D007076 4.7e-91 339.0 336 54.8
ECA233G3743 Erigeron canadensis HOM05D002799 ORTHO05D007076 4.0e-90 335.9 237 70.9
Lsat_1_v5_gn_8_3761 Lactuca sativa HOM05D002799 ORTHO05D007076 2.0e-89 333.6 337 55.2
Zm00001eb430250 Zea mays HOM05D002799 ORTHO05D007076 9.1e-87 324.7 248 63.3
unitig_62.g23564 Utricularia gibba HOM05D002799 ORTHO05D007076 1.5e-84 317.4 314 57.6
Hund09770 Selenicereus undatus HOM05D002799 ORTHO05D007076 9.4e-84 314.7 410 46.1
Os04g0599400 Oryza sativa ssp. japonica HOM05D002799 ORTHO05D007076 2.7e-83 313.2 248 62.1
Lj2A621G40 Lonicera japonica HOM05D002799 ORTHO05D007076 1.3e-80 304.3 278 57.6
Os02g0238500 Oryza sativa ssp. japonica HOM05D002799 ORTHO05D007076 1.3e-80 304.3 230 63.9
Solyc03g006452.1 Solanum lycopersicum HOM05D002799 ORTHO05D007076 6.3e-80 302.0 297 55.2
Cpa.g.sc67.53 Carica papaya HOM05D002799 ORTHO05D007076 2.7e-78 296.6 192 72.9
Cfa015896 Carpinus fangiana HOM05D002799 ORTHO05D007076 7.7e-78 295.0 328 53.7
Sc13g0010800 Simmondsia chinensis HOM05D002799 ORTHO05D007076 1.1e-76 291.2 249 59.4
AagrBONN_evm.TU.Sc2ySwM_368.1885 Anthoceros agrestis HOM05D002799 ORTHO05D007076 7.5e-73 278.5 373 45.0
Pp3c5_23880 Physcomitrium patens HOM05D002799 ORTHO05D007076 1.7e-69 267.3 280 51.1
Actinidia34299 Actinidia chinensis HOM05D002799 ORTHO05D007076 1.2e-67 261.2 193 67.4
Sabra15G0103700 Salix brachista HOM05D002799 ORTHO05D007076 1.6e-67 260.8 337 46.9
Pp3c3_18900 Physcomitrium patens HOM05D002799 ORTHO05D007076 6.1e-67 258.8 280 49.6
Mapoly0041s0072 Marchantia polymorpha HOM05D002799 ORTHO05D007076 1.3e-61 241.1 277 47.7
CBR_g26239 Chara braunii HOM05D002799 ORTHO05D007076 1.8e-58 230.7 305 41.6
Hma1.2p1_0758F.1_g213590 Hydrangea macrophylla HOM05D002799 ORTHO05D007076 7.0e-55 218.8 201 58.7
SMO196G0267 Selaginella moellendorffii HOM05D002799 ORTHO05D007076 1.2e-54 218.0 196 54.1
FvH4_7g33593 Fragaria vesca HOM05D002799 ORTHO05D007076 3.0e-53 213.4 229 52.0
Lj3A801T16 Lonicera japonica HOM05D002799 ORTHO05D007076 2.1e-51 207.2 227 47.1
Haze_00592 Corylus avellana HOM05D002799 ORTHO05D007076 1.3e-48 198.0 198 56.6
Zm00001eb071960 Zea mays HOM05D002799 ORTHO05D007076 1.2e-41 174.9 118 66.9
FvH4_7g33592 Fragaria vesca HOM05D002799 ORTHO05D007076 5.8e-41 172.6 123 66.7
SEGI_10035 Sequoiadendron giganteum HOM05D002799 ORTHO05D007076 4.3e-36 156.4 99 72.7
Sabra15G0103800 Salix brachista HOM05D002799 ORTHO05D007076 5.3e-34 149.4 114 65.8
Peaxi162Scf00195g01110 Petunia axillaris HOM05D002799 ORTHO05D007076 6.0e-30 136.0 112 61.6
Nitab4.5_0000701g0060 Nicotiana tabacum HOM05D002799 ORTHO05D007076 1.0e-29 135.2 175 45.1
Nitab4.5_0000793g0030 Nicotiana tabacum HOM05D002799 ORTHO05D007076 1.7e-29 134.4 173 46.8
PRCOL_00006278 Prasinoderma coloniale HOM05D002799 ORTHO05D007076 6.6e-29 132.5 270 37.0
TPR.G19958 Trifolium pratense HOM05D002799 ORTHO05D007076 1.6e-27 127.9 62 85.5
Cre06.g267850 Chlamydomonas reinhardtii HOM05D002799 ORTHO05D007076 1.1e-23 115.2 181 36.5
TPR.G21490 Trifolium pratense HOM05D002799 ORTHO05D007076 1.1e-23 115.2 73 72.6
Haze_00593 Corylus avellana HOM05D002799 ORTHO05D007076 2.1e-22 110.9 61 86.9
Nitab4.5_0000701g0050 Nicotiana tabacum HOM05D002799 ORTHO05D007076 8.7e-21 105.5 194 41.8
Lj2C621T3 Lonicera japonica HOM05D002799 ORTHO05D007076 5.6e-20 102.8 63 79.4
Nitab4.5_0000793g0020 Nicotiana tabacum HOM05D002799 ORTHO05D007076 9.6e-20 102.1 145 45.5
QL03p008982 Quercus lobata HOM05D000009 ORTHO05D000008 1.1e-18 98.6 131 50.4
Cfa023729 Carpinus fangiana HOM05D002799 ORTHO05D007076 2.9e-16 90.5 300 26.7
FAN10G3554 Fragaria x ananassa HOM05D012649 ORTHO05D007076 3.2e-15 87.0 49 81.6
SEGI_38885 Sequoiadendron giganteum HOM05D002799 ORTHO05D007076 3.2e-15 87.0 70 61.4
HanXRQChr15g0477781 Helianthus annuus HOM05D002799 ORTHO05D007076 3.5e-14 83.6 64 65.6
Actinidia04566 Actinidia chinensis HOM05D002799 ORTHO05D007076 2.3e-13 80.9 190 35.3
QL03p009165 Quercus lobata HOM05D000009 ORTHO05D000008 3.0e-13 80.5 55 78.2
SalBow8G2774 Salvia bowleyana HOM05D002799 ORTHO05D007076 2.4e-10 70.9 47 76.6
SHI36546 Sapria himalayana HOM05D000107 ORTHO05D000233 3.1e-10 70.5 70 52.9
Zm00001eb315690 Zea mays HOM05D002799 ORTHO05D007076 7.1e-07 59.3 55 49.1


User provided reference genes

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